Mercurial > repos > nml > package_python_3_4_hppy_0_9_6
changeset 3:1979b0ff1d00 draft
planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hppy_0_9_6 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa-dirty
| author | nml |
|---|---|
| date | Thu, 07 Jul 2016 13:12:38 -0400 |
| parents | 3a5a3720d965 |
| children | a3569ef6d0ff |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 46 insertions(+), 29 deletions(-) [+] |
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--- a/tool_dependencies.xml Thu Jul 07 12:54:06 2016 -0400 +++ b/tool_dependencies.xml Thu Jul 07 13:12:38 2016 -0400 @@ -1,32 +1,49 @@ <?xml version="1.0"?> <tool_dependency> - <package name="python" version="3.4"> - <repository changeset_revision="20ecf5cd3c0e" name="package_python_3_4" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> - </package> - <package name="hyphy-python" version="0.1.3"> - <repository changeset_revision="86947a99997b" name="package_python_3_4_hyphy_python_0_1_3" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> - </package> - <package name="hppy" version="0.9.6"> - <install version="1.0"> - <actions> - <action type="setup_virtualenv">https://pypi.python.org/packages/source/f/fakemp/fakemp-0.9.1.tar.gz</action> - <action type="set_environment_for_install"> - <repository changeset_revision="86947a99997b" name="package_python_3_4_hyphy_python_0_1_3" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu"> - <package name="hyphy-python" version="0.1.3" /> - </repository> - <repository changeset_revision="20ecf5cd3c0e" name="package_python_3_4" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> - <package name="python" version="3.4" /> - </repository> - </action> - <action type="make_directory">$INSTALL_DIR/lib/python</action> - <action type="setup_virtualenv">https://github.com/veg/hppy/archive/0.9.6.tar.gz</action> - <action type="set_environment"> - <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> - <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_HYPHY_PYTHON]</environment_variable> - <environment_variable action="append_to" name="PYTHONPATH_HPPY">$INSTALL_DIR/lib/python</environment_variable> - </action> - </actions> - </install> - <readme>hppy from https://github.com/veg/hppy</readme> - </package> + <package name="python" version="3.4"> + <repository changeset_revision="20ecf5cd3c0e" name="package_python_3_4" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + <package name="cython" version="0.23.4"> + <repository changeset_revision="52c11d398790" name="package_python_3_4_cython_0_23_4" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + <package name="hyphy-python" version="0.1.3"> + <repository changeset_revision="86947a99997b" name="package_python_3_4_hyphy_python_0_1_3" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + <package name="fakemp" version="0.9.1"> + <repository changeset_revision="13da2754601c" name="package_python_3_4_fakemp_0_9_1" owner="nml" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> + <package name="hppy" version="0.9.6"> + <install version="1.0"> + <actions> + <action type="download_by_url">https://github.com/veg/hppy/archive/0.9.6.tar.gz</action> + <action type="set_environment_for_install"> + <repository changeset_revision="86947a99997b" name="package_python_3_4_hyphy_python_0_1_3" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu"> + <package name="hyphy-python" version="0.1.3" /> + </repository> + <repository changeset_revision="20ecf5cd3c0e" name="package_python_3_4" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> + <package name="python" version="3.4" /> + </repository> + <repository changeset_revision="52c11d398790" name="package_python_3_4_cython_0_23_4" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu"> + <package name="cython" version="0.23.4" /> + </repository> + <repository changeset_revision="13da2754601c" name="package_python_3_4_fakemp_0_9_1" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu"> + <package name="fakemp" version="0.9.1" /> + </repository> + </action> + <action type="make_directory">$INSTALL_DIR/lib/python</action> + <action type="shell_command"> + export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python && + python3 setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin + </action> + <action type="set_environment"> + <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> + <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_HYPHY_PYTHON]</environment_variable> + <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_CYTHON]</environment_variable> + <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_FAKEMP]</environment_variable> + <environment_variable action="append_to" name="PYTHONPATH_HPPY">$INSTALL_DIR/lib/python</environment_variable> + </action> + </actions> + </install> + <readme>hppy from https://github.com/veg/hppy</readme> + </package> </tool_dependency>