Mercurial > repos > nml > package_python_3_4_hyphy_python_0_1_3
annotate tool_dependencies.xml @ 1:5c14a49141f0 draft default tip
planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_python_0_1_3 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa-dirty
author | nml |
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date | Thu, 07 Jul 2016 13:19:06 -0400 |
parents | 86947a99997b |
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86947a99997b
planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_python_0_1_3 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa-dirty
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1 <?xml version="1.0"?> |
86947a99997b
planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_python_0_1_3 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa-dirty
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2 <tool_dependency> |
86947a99997b
planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_python_0_1_3 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa-dirty
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3 <package name="python" version="3.4"> |
86947a99997b
planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_python_0_1_3 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa-dirty
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4 <repository changeset_revision="20ecf5cd3c0e" name="package_python_3_4" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> |
86947a99997b
planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_python_0_1_3 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa-dirty
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5 </package> |
86947a99997b
planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_python_0_1_3 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa-dirty
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6 <package name="hyphy-python" version="0.1.3"> |
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planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_python_0_1_3 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa-dirty
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7 <install version="1.0"> |
86947a99997b
planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_python_0_1_3 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa-dirty
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8 <actions> |
86947a99997b
planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_python_0_1_3 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa-dirty
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9 <action type="set_environment_for_install"> |
86947a99997b
planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_python_0_1_3 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa-dirty
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10 <repository changeset_revision="20ecf5cd3c0e" name="package_python_3_4" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> |
86947a99997b
planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_python_0_1_3 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa-dirty
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11 <package name="python" version="3.4" /> |
86947a99997b
planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_python_0_1_3 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa-dirty
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12 </repository> |
86947a99997b
planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_python_0_1_3 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa-dirty
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13 </action> |
86947a99997b
planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_python_0_1_3 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa-dirty
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14 <action type="shell_command">git clone https://github.com/veg/hyphy-python</action> |
86947a99997b
planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_python_0_1_3 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa-dirty
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15 <action type="change_directory">hyphy-python</action> |
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planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_python_0_1_3 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa-dirty
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16 <action type="shell_command">git checkout 0.1.3</action> |
86947a99997b
planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_python_0_1_3 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa-dirty
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17 <action type="shell_command">git submodule update --init</action> |
86947a99997b
planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_python_0_1_3 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa-dirty
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18 <action type="make_directory">$INSTALL_DIR/lib/python</action> |
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planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_python_0_1_3 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa-dirty
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19 <action type="shell_command"> |
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planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_python_0_1_3 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa-dirty
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20 export PYTHONPATH=$PYTHONPATH:$INSTALL_DIR/lib/python && |
86947a99997b
planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_python_0_1_3 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa-dirty
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21 python3 setup.py install --install-lib $INSTALL_DIR/lib/python --install-scripts $INSTALL_DIR/bin |
86947a99997b
planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_python_0_1_3 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa-dirty
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22 </action> |
86947a99997b
planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_python_0_1_3 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa-dirty
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23 <action type="set_environment"> |
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planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_python_0_1_3 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa-dirty
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24 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable> |
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86947a99997b
planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_python_0_1_3 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa-dirty
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25 <environment_variable action="append_to" name="PATH">$INSTALL_DIR/bin</environment_variable> |
86947a99997b
planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_python_0_1_3 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa-dirty
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26 <environment_variable action="set_to" name="PYTHONPATH_HYPHY_PYTHON">$INSTALL_DIR/lib/python</environment_variable> |
86947a99997b
planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_python_0_1_3 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa-dirty
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27 <environment_variable action="set_to" name="PATH_HYPHY_PYTHON">$INSTALL_DIR/bin</environment_variable> |
86947a99997b
planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_python_0_1_3 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa-dirty
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28 <environment_variable action="set_to" name="HYPHY_PYTHON_ROOT_DIR">$INSTALL_DIR</environment_variable> |
86947a99997b
planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_python_0_1_3 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa-dirty
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29 </action> |
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planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_python_0_1_3 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa-dirty
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30 </actions> |
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planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_python_0_1_3 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa-dirty
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31 </install> |
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planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_python_0_1_3 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa-dirty
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32 <readme> |
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planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_python_0_1_3 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa-dirty
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33 This installs hyphy-python 0.1.3. |
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planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_python_0_1_3 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa-dirty
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34 </readme> |
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planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_python_0_1_3 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa-dirty
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35 </package> |
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planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/packages/package_python_3_4_hyphy_python_0_1_3 commit e2554dc878f6abf1c02ed9e6e4f4440ed32b02aa-dirty
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36 </tool_dependency> |