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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="python" version="2.7.10">
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4 <repository changeset_revision="bd7165ea6526" name="package_python_2_7_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
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5 </package>
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6 <package name="atlas" version="3.10.2">
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7 <repository changeset_revision="98c017ec230d" name="package_atlas_3_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
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8 </package>
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9 <package name="numpy" version="1.9">
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10 <repository changeset_revision="f24fc0b630fc" name="package_python_2_7_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
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11 </package>
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12 <package name="scipy" version="0.14">
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13 <repository changeset_revision="7fddd308117d" name="package_python_2_7_scipy_0_14" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
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14 </package>
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15 <package name="srst2" version="0.1.4.6">
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16 <install version="1.0">
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17 <actions_group>
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18 <actions>
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19 <action sha256sum="24cbd03933d4cc14bbfa7f8a073c9b0caafb13d55afb3bfa25f8b093fc5bc615" type="download_by_url">https://github.com/katholt/srst2/archive/v0.1.6.tar.gz</action>
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20 <action type="shell_command">cp ./scripts/getmlst.py $INSTALL_DIR</action>
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21 <action type="shell_command">cp ./scripts/srst2.py $INSTALL_DIR</action>
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22 <action type="chmod"><file mode="777">$INSTALL_DIR/getmlst.py</file></action>
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23 <action type="chmod"><file mode="777">$INSTALL_DIR/srst2.py</file></action>
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24 <action type="set_environment_for_install">
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25 <repository changeset_revision="bd7165ea6526" name="package_python_2_7_10" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
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26 <package name="python" version="2.7.10" />
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27 </repository>
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28 <repository changeset_revision="98c017ec230d" name="package_atlas_3_10" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
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29 <package name="atlas" version="3.10.2" />
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30 </repository>
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31 <repository changeset_revision="f24fc0b630fc" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
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32 <package name="numpy" version="1.9" />
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33 </repository>
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34 <repository changeset_revision="7fddd308117d" name="package_python_2_7_scipy_0_14" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
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35 <package name="scipy" version="0.14" />
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36 </repository>
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37
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38 </action>
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39 <action type="set_environment">
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40 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
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41 <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
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42 <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable>
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43 <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]/lib/python</environment_variable>
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44 <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_SCIPY]</environment_variable>
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45 <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_SCIPY]/lib/python</environment_variable>
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46 <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
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47 <environment_variable action="prepend_to" name="PATH">$ENV[PYTHONHOME]/bin</environment_variable>
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48 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[PYTHONHOME]/lib</environment_variable>
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49 <environment_variable action="set_to" name="BASE">$INSTALL_DIR</environment_variable>
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50 <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[ATLAS_LIB_DIR]</environment_variable>
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51 </action>
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52 </actions>
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53 </actions_group>
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54 </install>
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55 </package>
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56 </tool_dependency>
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