comparison tool_dependencies.xml @ 0:79a05e500381 draft default tip

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0:79a05e500381

<?xml version="1.0"?>
<tool_dependency>
	<package name="python" version="2.7.10">
		<repository changeset_revision="bd7165ea6526" name="package_python_2_7_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="atlas" version="3.10.2">
    	<repository changeset_revision="98c017ec230d" name="package_atlas_3_10" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="numpy" version="1.9">
		<repository changeset_revision="f24fc0b630fc" name="package_python_2_7_numpy_1_9" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="scipy" version="0.14">
		<repository changeset_revision="7fddd308117d" name="package_python_2_7_scipy_0_14" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
    </package>
    <package name="srst2" version="0.1.4.6">
	    <install version="1.0">
	         <actions_group>
	            <actions>
	                <action sha256sum="24cbd03933d4cc14bbfa7f8a073c9b0caafb13d55afb3bfa25f8b093fc5bc615" type="download_by_url">https://github.com/katholt/srst2/archive/v0.1.6.tar.gz</action>
					<action type="shell_command">cp ./scripts/getmlst.py $INSTALL_DIR</action>
					<action type="shell_command">cp ./scripts/srst2.py $INSTALL_DIR</action>
                    <action type="chmod"><file mode="777">$INSTALL_DIR/getmlst.py</file></action>
					<action type="chmod"><file mode="777">$INSTALL_DIR/srst2.py</file></action>
					<action type="set_environment_for_install">
                        <repository changeset_revision="bd7165ea6526" name="package_python_2_7_10" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
                    		<package name="python" version="2.7.10" />
            			</repository>
            			<repository changeset_revision="98c017ec230d" name="package_atlas_3_10" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
		                    <package name="atlas" version="3.10.2" />
		                </repository>
						<repository changeset_revision="f24fc0b630fc" name="package_python_2_7_numpy_1_9" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
		                    <package name="numpy" version="1.9" />
		                </repository>
		                <repository changeset_revision="7fddd308117d" name="package_python_2_7_scipy_0_14" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu">
		                    <package name="scipy" version="0.14" />
		                </repository>

                 	</action>
                    <action type="set_environment">
                    	<environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR/lib/python</environment_variable>
 		                <environment_variable action="append_to" name="PYTHONPATH">$INSTALL_DIR</environment_variable>
		                <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]</environment_variable>
		                <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_NUMPY]/lib/python</environment_variable>
		                <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_SCIPY]</environment_variable>
		                <environment_variable action="append_to" name="PYTHONPATH">$ENV[PYTHONPATH_SCIPY]/lib/python</environment_variable>
	                    <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable>
	                    <environment_variable action="prepend_to" name="PATH">$ENV[PYTHONHOME]/bin</environment_variable>
	                    <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[PYTHONHOME]/lib</environment_variable>
	                    <environment_variable action="set_to" name="BASE">$INSTALL_DIR</environment_variable>
	                    <environment_variable action="prepend_to" name="LD_LIBRARY_PATH">$ENV[ATLAS_LIB_DIR]</environment_variable>
                    </action>
	            </actions>
	       	</actions_group>
	    </install>
	</package>
</tool_dependency>