Mercurial > repos > nml > plasmidspades
changeset 1:a415d510332b draft default tip
Changing version
| author | nml |
|---|---|
| date | Mon, 07 Nov 2016 16:31:18 -0500 |
| parents | 27b90e43e2d8 |
| children | |
| files | CHANGE plasmidSPAdes.xml tool_dependencies.xml |
| diffstat | 2 files changed, 5 insertions(+), 5 deletions(-) [+] |
line wrap: on
line diff
--- a/plasmidSPAdes.xml Mon Jun 06 15:13:06 2016 -0400 +++ b/plasmidSPAdes.xml Mon Nov 07 16:31:18 2016 -0500 @@ -1,7 +1,7 @@ -<tool id="plasmidspades" name="plasmidspades" version="1.0"> +<tool id="plasmidspades" name="plasmidspades" version="1.1"> <description>genome assembler for plasmids</description> <requirements> - <requirement type="package" version="3.8.0">spades</requirement> + <requirement type="package" version="3.9.0">spades</requirement> </requirements> <command interpreter="perl">spades.pl $out_contigs @@ -217,7 +217,7 @@ SPAdes – St. Petersburg genome assembler – is intended for both standard isolates and single-cell MDA bacteria assemblies. See http://bioinf.spbau.ru/en/spades for more details on SPAdes. -This wrapper runs SPAdes 3.8, collects the output, and throws away all the temporary files. It also produces a tab file with contig names, length and coverage. +This wrapper runs SPAdes 3.9, collects the output, and throws away all the temporary files. It also produces a tab file with contig names, length and coverage. **License**
--- a/tool_dependencies.xml Mon Jun 06 15:13:06 2016 -0400 +++ b/tool_dependencies.xml Mon Nov 07 16:31:18 2016 -0500 @@ -1,6 +1,6 @@ <?xml version="1.0"?> <tool_dependency> - <package name="spades" version="3.8.0"> - <repository changeset_revision="c9eab59c0bc2" name="package_spades_3_8_0" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu" /> + <package name="spades" version="3.9.0"> + <repository changeset_revision="d8c8c3dc8f9a" name="package_spades_3_9_0" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu" /> </package> </tool_dependency>