annotate test-data/test.vcf @ 0:71976cfc9022 draft

planemo upload for repository https://github.com/phac-nml/quasitools commit 8a264400a75945e2e0fdd5a08c007a8b1b7a2f0f

##fileformat=VCFv4.2
##fileDate=20170925
##source=quasitools
##contig=<ID=SIVmac239M5SpXplasmid_reference_1269-10407,length=9139>
##INFO=<ID=DP,Number=1,Type=Integer,Description="Total Depth">
##INFO=<ID=AC,Number=A,Type=Integer,Description="Allele Count">
##INFO=<ID=AF,Number=A,Type=Float,Description="Allele Frequency">
##FILTER=<ID=q30,Description="Set if True; QUAL<30">
##FILTER=<ID=ac5,Description="Set if True; AC<5">
##FILTER=<ID=dp100,Description="Set if True; DP<100">
#CHROM	POS	ID	REF	ALT	QUAL	FILTER	INFO
SIVmac239M5SpXplasmid_reference_1269-10407	13	.	a	t	3	q30;ac5	DP=394;AC=2;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	14	.	g	t	9	q30;ac5	DP=467;AC=4;AF=0.0086
SIVmac239M5SpXplasmid_reference_1269-10407	15	.	g	t	5	q30;ac5	DP=483;AC=3;AF=0.0062
SIVmac239M5SpXplasmid_reference_1269-10407	16	.	a	c	2	q30;ac5	DP=486;AC=2;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	16	.	a	t	2	q30;ac5	DP=486;AC=2;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	17	.	a	c	2	q30;ac5	DP=490;AC=2;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	18	.	g	a	1	q30;ac5	DP=602;AC=2;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	18	.	g	t	3	q30;ac5	DP=602;AC=3;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	19	.	g	t	16	q30	DP=870;AC=8;AF=0.0092
SIVmac239M5SpXplasmid_reference_1269-10407	25	.	t	a	4	q30	DP=1799;AC=8;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	25	.	t	g	10	q30	DP=1799;AC=11;AF=0.0061
SIVmac239M5SpXplasmid_reference_1269-10407	28	.	g	t	3	q30	DP=2225;AC=9;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	30	.	t	a	3	q30	DP=2274;AC=9;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	30	.	t	g	5	q30	DP=2274;AC=11;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	32	.	g	t	1	q30	DP=2587;AC=8;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	33	.	a	t	1	q30	DP=2624;AC=8;AF=0.0030
SIVmac239M5SpXplasmid_reference_1269-10407	35	.	t	g	10	q30	DP=2708;AC=15;AF=0.0055
SIVmac239M5SpXplasmid_reference_1269-10407	36	.	g	t	19	q30	DP=2750;AC=19;AF=0.0069
SIVmac239M5SpXplasmid_reference_1269-10407	42	.	t	a	1	q30	DP=2953;AC=10;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	46	.	c	a	6	q30	DP=3128;AC=15;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	49	.	g	t	5	q30	DP=3303;AC=15;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	51	.	g	t	2	q30	DP=3345;AC=13;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	54	.	a	g	1	q30	DP=3463;AC=11;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	56	.	t	a	3	q30	DP=3502;AC=14;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	56	.	t	g	17	q30	DP=3502;AC=22;AF=0.0063
SIVmac239M5SpXplasmid_reference_1269-10407	57	.	c	a	4	q30	DP=3533;AC=15;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	58	.	c	a	1	q30	DP=3543;AC=12;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	61	.	c	a	1	q30	DP=3630;AC=12;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	62	.	t	g	3	q30	DP=3647;AC=15;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	66	.	c	a	3	q30	DP=3772;AC=15;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	69	.	g	a	2	q30	DP=3853;AC=14;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	86	.	t	g	19	q30	DP=4543;AC=28;AF=0.0062
SIVmac239M5SpXplasmid_reference_1269-10407	87	.	t	g	3	q30	DP=4545;AC=18;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	96	.	t	g	43	PASS	DP=4838;AC=38;AF=0.0079
SIVmac239M5SpXplasmid_reference_1269-10407	101	.	c	a	4	q30	DP=5025;AC=21;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	102	.	t	a	1	q30	DP=5015;AC=16;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	102	.	t	g	1	q30	DP=5015;AC=17;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	107	.	c	a	11	q30	DP=5234;AC=27;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	108	.	c	a	3	q30	DP=5190;AC=21;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	109	.	c	a	17	q30	DP=5197;AC=30;AF=0.0058
SIVmac239M5SpXplasmid_reference_1269-10407	125	.	t	g	1	q30	DP=5724;AC=19;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	132	.	t	a	2	q30	DP=6127;AC=23;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	132	.	t	g	11	q30	DP=6127;AC=31;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	133	.	g	t	1	q30	DP=6169;AC=22;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	135	.	a	g	1	q30	DP=6353;AC=22;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	137	.	c	a	1	q30	DP=6476;AC=23;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	144	.	t	g	1	q30	DP=7588;AC=27;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	148	.	g	t	17	q30	DP=7351;AC=40;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	150	.	c	a	5	q30	DP=7268;AC=31;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	161	.	t	g	15	q30	DP=7616;AC=40;AF=0.0053
SIVmac239M5SpXplasmid_reference_1269-10407	162	.	t	g	3	q30	DP=7613;AC=30;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	166	.	t	g	2	q30	DP=7734;AC=28;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	170	.	t	a	4	q30	DP=7906;AC=32;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	170	.	t	g	28	q30	DP=7906;AC=48;AF=0.0061
SIVmac239M5SpXplasmid_reference_1269-10407	171	.	t	a	35	PASS	DP=7910;AC=51;AF=0.0064
SIVmac239M5SpXplasmid_reference_1269-10407	171	.	t	g	5	q30	DP=7910;AC=34;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	172	.	t	a	9	q30	DP=7869;AC=37;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	172	.	t	g	2	q30	DP=7869;AC=29;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	173	.	g	t	4	q30	DP=7915;AC=33;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	187	.	c	a	13	q30	DP=8100;AC=41;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	188	.	c	a	5	q30	DP=8089;AC=34;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	194	.	g	t	8	q30	DP=8140;AC=37;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	206	.	g	t	7	q30	DP=8076;AC=36;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	207	.	g	t	2	q30	DP=7991;AC=29;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	209	.	t	g	2	q30	DP=7707;AC=28;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	212	.	c	a	4	q30	DP=7710;AC=32;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	224	.	t	a	1	q30	DP=7242;AC=25;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	226	.	g	t	9	q30	DP=7172;AC=34;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	234	.	c	a	1	q30	DP=7199;AC=25;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	236	.	c	a	5	q30	DP=7034;AC=30;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	237	.	c	a	10	q30	DP=6921;AC=34;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	239	.	t	g	1	q30	DP=6920;AC=23;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	245	.	c	a	2	q30	DP=6591;AC=24;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	246	.	c	a	6	q30	DP=6551;AC=29;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	253	.	c	a	1	q30	DP=6375;AC=21;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	254	.	t	g	4	q30	DP=6347;AC=26;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	255	.	c	a	6	q30	DP=6334;AC=28;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	262	.	t	g	18	q30	DP=6333;AC=36;AF=0.0057
SIVmac239M5SpXplasmid_reference_1269-10407	263	.	t	g	2	q30	DP=6342;AC=24;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	271	.	c	a	4	q30	DP=6400;AC=26;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	272	.	c	a	12	q30	DP=6432;AC=33;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	273	.	t	g	2	q30	DP=6406;AC=24;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	274	.	t	g	5	q30	DP=7290;AC=31;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	285	.	t	a	2	q30	DP=5824;AC=21;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	285	.	t	g	45	PASS	DP=5824;AC=44;AF=0.0076
SIVmac239M5SpXplasmid_reference_1269-10407	287	.	t	g	3	q30	DP=5804;AC=23;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	288	.	g	t	1	q30	DP=5810;AC=19;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	289	.	c	a	17	q30	DP=5802;AC=33;AF=0.0057
SIVmac239M5SpXplasmid_reference_1269-10407	291	.	t	g	4	q30	DP=5788;AC=24;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	294	.	t	a	4	q30	DP=5703;AC=24;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	294	.	t	g	4	q30	DP=5703;AC=24;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	297	.	g	t	2	q30	DP=5570;AC=20;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	303	.	t	a	1	q30	DP=5494;AC=19;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	303	.	t	g	41	PASS	DP=5494;AC=41;AF=0.0075
SIVmac239M5SpXplasmid_reference_1269-10407	305	.	c	a	8	q30	DP=5472;AC=26;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	309	.	c	a	1	q30	DP=5455;AC=19;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	314	.	g	t	1	q30	DP=5559;AC=18;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	315	.	a	g	2	q30	DP=5532;AC=20;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	321	.	t	a	2	q30	DP=5481;AC=21;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	328	.	c	a	3	q30	DP=5479;AC=22;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	330	.	c	a	10	q30	DP=5334;AC=27;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	331	.	t	a	4	q30	DP=5255;AC=22;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	331	.	t	c	1	q30	DP=5255;AC=18;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	334	.	g	a	6	q30	DP=5260;AC=24;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	339	.	c	a	36	PASS	DP=5090;AC=37;AF=0.0073
SIVmac239M5SpXplasmid_reference_1269-10407	342	.	a	c	1	q30	DP=4942;AC=17;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	351	.	t	g	1	q30	DP=5106;AC=17;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	359	.	c	a	7	q30	DP=4729;AC=22;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	361	.	c	a	9	q30	DP=4767;AC=24;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	362	.	c	a	8	q30	DP=4741;AC=23;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	363	.	t	g	10	q30	DP=4725;AC=24;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	366	.	t	g	2	q30	DP=4686;AC=18;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	367	.	g	a	10	q30	DP=4715;AC=24;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	370	.	g	a	2	q30	DP=4605;AC=17;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	370	.	g	t	6	q30	DP=4605;AC=21;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	390	.	c	a	5	q30	DP=4756;AC=21;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	391	.	t	a	2	q30	DP=4662;AC=17;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	391	.	t	g	40	PASS	DP=4662;AC=36;AF=0.0077
SIVmac239M5SpXplasmid_reference_1269-10407	393	.	t	a	9	q30	DP=4581;AC=23;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	393	.	t	g	6	q30	DP=4581;AC=21;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	395	.	c	a	35	PASS	DP=4607;AC=34;AF=0.0074
SIVmac239M5SpXplasmid_reference_1269-10407	396	.	c	a	39	PASS	DP=4694;AC=36;AF=0.0077
SIVmac239M5SpXplasmid_reference_1269-10407	400	.	a	c	3	q30	DP=4732;AC=19;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	404	.	a	c	2	q30	DP=4809;AC=18;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	406	.	t	a	1	q30	DP=4838;AC=17;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	406	.	t	g	2	q30	DP=4838;AC=18;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	408	.	g	t	6	q30	DP=4850;AC=22;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	410	.	c	a	4	q30	DP=4847;AC=20;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	411	.	c	a	9	q30	DP=4868;AC=24;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	413	.	a	g	1	q30	DP=4856;AC=16;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	414	.	c	a	3	q30	DP=4909;AC=19;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	417	.	c	a	12	q30	DP=4893;AC=26;AF=0.0053
SIVmac239M5SpXplasmid_reference_1269-10407	419	.	c	a	7	q30	DP=4912;AC=23;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	420	.	c	a	35	PASS	DP=4743;AC=35;AF=0.0074
SIVmac239M5SpXplasmid_reference_1269-10407	422	.	t	a	31	PASS	DP=4848;AC=34;AF=0.0070
SIVmac239M5SpXplasmid_reference_1269-10407	422	.	t	g	99	PASS	DP=4848;AC=52;AF=0.0107
SIVmac239M5SpXplasmid_reference_1269-10407	424	.	t	a	6	q30	DP=4846;AC=22;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	426	.	g	a	1	q30	DP=4787;AC=16;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	426	.	g	t	5	q30	DP=4787;AC=21;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	427	.	c	a	1	q30	DP=4753;AC=16;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	428	.	g	t	13	q30	DP=4729;AC=26;AF=0.0055
SIVmac239M5SpXplasmid_reference_1269-10407	430	.	c	a	27	q30	DP=4702;AC=32;AF=0.0068
SIVmac239M5SpXplasmid_reference_1269-10407	433	.	a	c	7	q30	DP=4671;AC=22;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	434	.	g	t	4	q30	DP=4739;AC=20;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	435	.	g	t	4	q30	DP=4747;AC=20;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	436	.	a	c	1	q30	DP=4721;AC=16;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	437	.	g	t	1	q30	DP=4762;AC=16;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	438	.	g	t	4	q30	DP=4769;AC=20;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	440	.	a	c	3	q30	DP=4904;AC=19;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	441	.	a	c	2	q30	DP=4871;AC=18;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	442	.	t	a	2	q30	DP=4884;AC=18;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	442	.	t	g	14	q30	DP=4884;AC=27;AF=0.0055
SIVmac239M5SpXplasmid_reference_1269-10407	443	.	t	g	7	q30	DP=4845;AC=23;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	445	.	c	a	15	q30	DP=4960;AC=28;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	446	.	c	a	92	PASS	DP=4931;AC=51;AF=0.0103
SIVmac239M5SpXplasmid_reference_1269-10407	447	.	c	a	17	q30	DP=4971;AC=29;AF=0.0058
SIVmac239M5SpXplasmid_reference_1269-10407	450	.	t	a	3	q30	DP=5188;AC=21;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	450	.	t	g	10	q30	DP=5188;AC=26;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	452	.	c	a	8	q30	DP=5257;AC=25;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	453	.	a	g	1	q30	DP=5215;AC=17;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	455	.	c	a	8	q30	DP=5415;AC=26;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	458	.	a	g	1	q30	DP=5151;AC=17;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	459	.	t	a	2	q30	DP=5136;AC=19;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	459	.	t	g	44	PASS	DP=5136;AC=40;AF=0.0078
SIVmac239M5SpXplasmid_reference_1269-10407	461	.	g	t	1	q30	DP=5215;AC=17;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	462	.	g	t	1	q30	DP=5273;AC=17;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	463	.	t	a	9	q30	DP=5192;AC=26;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	464	.	g	t	17	q30	DP=5177;AC=30;AF=0.0058
SIVmac239M5SpXplasmid_reference_1269-10407	470	.	t	g	4	q30	DP=5319;AC=22;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	472	.	t	a	6	q30	DP=5267;AC=24;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	472	.	t	g	1	q30	DP=5267;AC=18;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	474	.	t	g	9	q30	DP=5085;AC=25;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	475	.	c	a	18	q30	DP=5082;AC=30;AF=0.0059
SIVmac239M5SpXplasmid_reference_1269-10407	476	.	c	a	13	q30	DP=5000;AC=27;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	478	.	c	a	57	PASS	DP=5010;AC=43;AF=0.0086
SIVmac239M5SpXplasmid_reference_1269-10407	479	.	c	a	12	q30	DP=4915;AC=26;AF=0.0053
SIVmac239M5SpXplasmid_reference_1269-10407	480	.	t	g	1	q30	DP=4891;AC=17;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	482	.	c	a	21	q30	DP=5011;AC=31;AF=0.0062
SIVmac239M5SpXplasmid_reference_1269-10407	483	.	c	a	4	q30	DP=5036;AC=21;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	485	.	t	g	21	q30	DP=5035;AC=31;AF=0.0062
SIVmac239M5SpXplasmid_reference_1269-10407	486	.	t	g	1	q30	DP=5048;AC=17;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	488	.	a	c	1	q30	DP=5035;AC=17;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	490	.	c	a	71	PASS	DP=5067;AC=47;AF=0.0093
SIVmac239M5SpXplasmid_reference_1269-10407	491	.	c	a	72	PASS	DP=5057;AC=47;AF=0.0093
SIVmac239M5SpXplasmid_reference_1269-10407	492	.	c	a	26	q30	DP=5013;AC=33;AF=0.0066
SIVmac239M5SpXplasmid_reference_1269-10407	493	.	g	t	1	q30	DP=5001;AC=16;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	494	.	a	c	1	q30	DP=5007;AC=17;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	495	.	g	t	6	q30	DP=5032;AC=23;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	500	.	t	a	5	q30	DP=5330;AC=23;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	500	.	t	g	51	PASS	DP=5330;AC=43;AF=0.0081
SIVmac239M5SpXplasmid_reference_1269-10407	501	.	t	g	7	q30	DP=5323;AC=25;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	507	.	c	a	16	q30	DP=5260;AC=30;AF=0.0057
SIVmac239M5SpXplasmid_reference_1269-10407	508	.	c	a	14	q30	DP=5249;AC=29;AF=0.0055
SIVmac239M5SpXplasmid_reference_1269-10407	510	.	g	t	1	q30	DP=5272;AC=18;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	511	.	g	a	5	q30	DP=5253;AC=23;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	513	.	t	g	2	q30	DP=5274;AC=19;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	516	.	a	c	7	q30	DP=5337;AC=25;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	518	.	t	g	27	q30	DP=5333;AC=35;AF=0.0066
SIVmac239M5SpXplasmid_reference_1269-10407	521	.	a	c	4	q30	DP=5244;AC=22;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	522	.	t	g	16	q30	DP=5225;AC=30;AF=0.0057
SIVmac239M5SpXplasmid_reference_1269-10407	523	.	a	c	3	q30	DP=5223;AC=21;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	525	.	a	c	1	q30	DP=5191;AC=18;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	526	.	g	t	7	q30	DP=5188;AC=24;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	527	.	g	t	19	q30	DP=5187;AC=31;AF=0.0060
SIVmac239M5SpXplasmid_reference_1269-10407	528	.	a	c	3	q30	DP=5159;AC=20;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	534	.	a	g	1	q30	DP=5192;AC=17;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	536	.	t	g	90	PASS	DP=5141;AC=52;AF=0.0101
SIVmac239M5SpXplasmid_reference_1269-10407	537	.	t	a	1	q30	DP=5144;AC=17;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	537	.	t	g	48	PASS	DP=5144;AC=41;AF=0.0080
SIVmac239M5SpXplasmid_reference_1269-10407	540	.	g	t	3	q30	DP=5125;AC=20;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	543	.	c	a	5	q30	DP=5115;AC=22;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	554	.	c	a	17	q30	DP=4780;AC=28;AF=0.0059
SIVmac239M5SpXplasmid_reference_1269-10407	555	.	c	a	22	q30	DP=4757;AC=30;AF=0.0063
SIVmac239M5SpXplasmid_reference_1269-10407	558	.	g	a	1	q30	DP=4740;AC=15;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	558	.	g	t	6	q30	DP=4740;AC=22;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	562	.	t	g	25	q30	DP=4664;AC=31;AF=0.0066
SIVmac239M5SpXplasmid_reference_1269-10407	566	.	g	t	1	q30	DP=4633;AC=16;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	567	.	c	a	9	q30	DP=4585;AC=23;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	573	.	c	a	5	q30	DP=4694;AC=21;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	581	.	t	g	4	q30	DP=4271;AC=18;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	585	.	c	a	1	q30	DP=4278;AC=15;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	586	.	c	a	56	PASS	DP=4233;AC=38;AF=0.0090
SIVmac239M5SpXplasmid_reference_1269-10407	587	.	c	a	28	q30	DP=4474;AC=31;AF=0.0069
SIVmac239M5SpXplasmid_reference_1269-10407	588	.	c	a	66	PASS	DP=4451;AC=42;AF=0.0094
SIVmac239M5SpXplasmid_reference_1269-10407	589	.	c	a	5	q30	DP=4496;AC=20;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	590	.	t	g	3	q30	DP=4494;AC=18;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	597	.	t	g	1	q30	DP=4158;AC=14;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	598	.	t	g	1	q30	DP=4069;AC=13;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	605	.	a	c	1	q30	DP=3963;AC=13;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	606	.	t	g	3	q30	DP=3986;AC=16;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	614	.	t	g	5	q30	DP=3847;AC=17;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	620	.	g	t	4	q30	DP=3845;AC=16;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	621	.	g	t	4	q30	DP=3836;AC=16;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	622	.	a	t	1	q30	DP=3788;AC=13;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	623	.	g	t	1	q30	DP=3783;AC=13;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	624	.	a	g	1	q30	DP=3688;AC=12;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	625	.	c	a	2	q30	DP=3719;AC=14;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	626	.	c	a	11	q30	DP=3654;AC=20;AF=0.0055
SIVmac239M5SpXplasmid_reference_1269-10407	628	.	t	c	1	q30	DP=3683;AC=13;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	628	.	t	g	2	q30	DP=3683;AC=14;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	631	.	a	c	2	q30	DP=3644;AC=14;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	632	.	g	t	1	q30	DP=3644;AC=12;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	637	.	t	g	9	q30	DP=3691;AC=19;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	646	.	t	g	3	q30	DP=3635;AC=15;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	655	.	t	g	1	q30	DP=3455;AC=12;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	657	.	t	a	3	q30	DP=3499;AC=14;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	657	.	t	g	3	q30	DP=3499;AC=14;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	658	.	t	g	2	q30	DP=3494;AC=13;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	668	.	g	t	2	q30	DP=3100;AC=11;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	670	.	g	t	2	q30	DP=3102;AC=11;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	673	.	t	g	1	q30	DP=3066;AC=10;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	676	.	a	g	2	q30	DP=3082;AC=12;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	679	.	t	g	2	q30	DP=3109;AC=12;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	681	.	g	t	8	q30	DP=3118;AC=16;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	682	.	g	t	5	q30	DP=3110;AC=14;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	683	.	g	t	2	q30	DP=3124;AC=12;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	685	.	c	a	3	q30	DP=3131;AC=13;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	686	.	t	a	2	q30	DP=3086;AC=11;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	686	.	t	g	20	q30	DP=3086;AC=21;AF=0.0068
SIVmac239M5SpXplasmid_reference_1269-10407	687	.	t	g	17	q30	DP=3101;AC=20;AF=0.0064
SIVmac239M5SpXplasmid_reference_1269-10407	688	.	g	t	1	q30	DP=3107;AC=10;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	692	.	c	a	2	q30	DP=3111;AC=12;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	694	.	c	a	17	q30	DP=3267;AC=21;AF=0.0064
SIVmac239M5SpXplasmid_reference_1269-10407	695	.	c	a	1	q30	DP=3268;AC=11;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	696	.	c	a	17	q30	DP=3271;AC=21;AF=0.0064
SIVmac239M5SpXplasmid_reference_1269-10407	702	.	c	a	3	q30	DP=3271;AC=13;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	705	.	c	a	5	q30	DP=3275;AC=15;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	706	.	t	a	13	q30	DP=3266;AC=19;AF=0.0058
SIVmac239M5SpXplasmid_reference_1269-10407	706	.	t	c	3	q30	DP=3266;AC=13;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	706	.	t	g	26	q30	DP=3266;AC=24;AF=0.0073
SIVmac239M5SpXplasmid_reference_1269-10407	707	.	c	a	2	q30	DP=3274;AC=12;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	708	.	c	a	23	q30	DP=3274;AC=23;AF=0.0070
SIVmac239M5SpXplasmid_reference_1269-10407	710	.	c	a	1	q30	DP=3316;AC=11;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	713	.	c	a	5	q30	DP=3323;AC=15;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	716	.	g	t	5	q30	DP=3312;AC=15;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	719	.	c	a	12	q30	DP=3328;AC=19;AF=0.0057
SIVmac239M5SpXplasmid_reference_1269-10407	723	.	t	g	11	q30	DP=3596;AC=20;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	724	.	t	g	10	q30	DP=3595;AC=19;AF=0.0053
SIVmac239M5SpXplasmid_reference_1269-10407	728	.	g	t	1	q30	DP=3560;AC=12;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	729	.	a	t	1	q30	DP=3530;AC=12;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	730	.	g	t	1	q30	DP=3460;AC=11;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	731	.	c	a	11	q30	DP=3456;AC=19;AF=0.0055
SIVmac239M5SpXplasmid_reference_1269-10407	732	.	c	a	32	PASS	DP=3452;AC=27;AF=0.0078
SIVmac239M5SpXplasmid_reference_1269-10407	734	.	t	a	4	q30	DP=3562;AC=15;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	734	.	t	g	3	q30	DP=3562;AC=14;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	735	.	c	a	2	q30	DP=3558;AC=13;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	737	.	g	t	2	q30	DP=3723;AC=14;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	738	.	g	t	2	q30	DP=3800;AC=14;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	739	.	a	c	5	q30	DP=3878;AC=17;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	740	.	t	a	6	q30	DP=3883;AC=18;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	740	.	t	c	1	q30	DP=3883;AC=13;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	743	.	g	t	3	q30	DP=4009;AC=16;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	745	.	t	g	4	q30	DP=4037;AC=17;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	746	.	a	c	2	q30	DP=3977;AC=15;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	747	.	t	g	8	q30	DP=4015;AC=20;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	748	.	t	g	4	q30	DP=4020;AC=17;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	750	.	c	a	4	q30	DP=4030;AC=17;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	752	.	g	t	2	q30	DP=4054;AC=15;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	753	.	g	t	8	q30	DP=4053;AC=20;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	760	.	t	g	28	q30	DP=4247;AC=30;AF=0.0071
SIVmac239M5SpXplasmid_reference_1269-10407	764	.	t	a	1	q30	DP=4354;AC=14;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	764	.	t	g	4	q30	DP=4354;AC=18;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	765	.	c	a	9	q30	DP=4374;AC=22;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	767	.	g	t	2	q30	DP=4456;AC=16;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	772	.	t	a	1	q30	DP=4398;AC=14;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	773	.	g	t	1	q30	DP=4488;AC=16;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	776	.	c	a	5	q30	DP=4601;AC=20;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	779	.	a	c	6	q30	DP=4629;AC=21;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	780	.	t	a	1	q30	DP=4642;AC=15;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	780	.	t	g	28	q30	DP=4642;AC=32;AF=0.0069
SIVmac239M5SpXplasmid_reference_1269-10407	781	.	c	a	7	q30	DP=4672;AC=22;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	782	.	c	a	14	q30	DP=4667;AC=26;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	784	.	g	t	4	q30	DP=4708;AC=20;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	786	.	g	a	6	q30	DP=4754;AC=22;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	787	.	g	a	2	q30	DP=4740;AC=18;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	789	.	t	g	4	q30	DP=4830;AC=20;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	791	.	t	g	1	q30	DP=4904;AC=16;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	793	.	c	a	2	q30	DP=5005;AC=18;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	797	.	c	a	27	q30	DP=5110;AC=34;AF=0.0067
SIVmac239M5SpXplasmid_reference_1269-10407	804	.	a	g	3	q30	DP=5265;AC=21;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	805	.	c	a	4	q30	DP=5522;AC=23;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	806	.	c	a	25	q30	DP=5494;AC=35;AF=0.0064
SIVmac239M5SpXplasmid_reference_1269-10407	807	.	c	a	13	q30	DP=5592;AC=30;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	808	.	c	a	13	q30	DP=5574;AC=30;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	810	.	t	a	27	q30	DP=5690;AC=37;AF=0.0065
SIVmac239M5SpXplasmid_reference_1269-10407	810	.	t	g	30	PASS	DP=5690;AC=38;AF=0.0067
SIVmac239M5SpXplasmid_reference_1269-10407	812	.	c	a	17	q30	DP=5773;AC=33;AF=0.0057
SIVmac239M5SpXplasmid_reference_1269-10407	813	.	c	a	11	q30	DP=5729;AC=29;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	815	.	g	t	11	q30	DP=5594;AC=29;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	816	.	t	a	7	q30	DP=5540;AC=26;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	816	.	t	g	12	q30	DP=5540;AC=29;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	818	.	g	t	3	q30	DP=5544;AC=22;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	819	.	g	t	7	q30	DP=5540;AC=26;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	820	.	c	a	32	PASS	DP=5545;AC=38;AF=0.0069
SIVmac239M5SpXplasmid_reference_1269-10407	823	.	c	a	2	q30	DP=5725;AC=21;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	825	.	t	a	3	q30	DP=5905;AC=24;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	825	.	t	g	64	PASS	DP=5905;AC=50;AF=0.0085
SIVmac239M5SpXplasmid_reference_1269-10407	826	.	t	a	9	q30	DP=5927;AC=29;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	826	.	t	g	25	q30	DP=5927;AC=37;AF=0.0062
SIVmac239M5SpXplasmid_reference_1269-10407	827	.	t	g	14	q30	DP=5962;AC=32;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	831	.	g	t	2	q30	DP=6042;AC=23;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	832	.	g	t	12	q30	DP=6013;AC=31;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	833	.	a	c	1	q30	DP=5993;AC=21;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	834	.	g	a	1	q30	DP=6012;AC=21;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	834	.	g	t	2	q30	DP=6012;AC=22;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	837	.	g	t	4	q30	DP=5992;AC=25;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	838	.	g	a	6	q30	DP=6033;AC=27;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	838	.	g	t	13	q30	DP=6033;AC=32;AF=0.0053
SIVmac239M5SpXplasmid_reference_1269-10407	840	.	t	a	13	q30	DP=6132;AC=32;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	840	.	t	g	7	q30	DP=6132;AC=28;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	841	.	c	a	35	PASS	DP=6139;AC=42;AF=0.0068
SIVmac239M5SpXplasmid_reference_1269-10407	842	.	c	a	57	PASS	DP=6234;AC=50;AF=0.0080
SIVmac239M5SpXplasmid_reference_1269-10407	845	.	c	a	2	q30	DP=6281;AC=24;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	846	.	t	a	7	q30	DP=6259;AC=29;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	846	.	t	g	17	q30	DP=6259;AC=35;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	847	.	g	t	12	q30	DP=6220;AC=32;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	848	.	g	a	1	q30	DP=6223;AC=21;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	848	.	g	t	21	q30	DP=6223;AC=37;AF=0.0059
SIVmac239M5SpXplasmid_reference_1269-10407	849	.	g	a	21	q30	DP=6276;AC=37;AF=0.0059
SIVmac239M5SpXplasmid_reference_1269-10407	849	.	g	t	47	PASS	DP=6276;AC=47;AF=0.0075
SIVmac239M5SpXplasmid_reference_1269-10407	850	.	g	t	1	q30	DP=6285;AC=21;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	851	.	t	a	2	q30	DP=6242;AC=23;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	852	.	t	a	1	q30	DP=6230;AC=22;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	854	.	c	a	18	q30	DP=6340;AC=36;AF=0.0057
SIVmac239M5SpXplasmid_reference_1269-10407	857	.	a	c	1	q30	DP=6310;AC=21;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	858	.	a	c	1	q30	DP=6316;AC=21;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	860	.	t	g	13	q30	DP=6340;AC=33;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	864	.	t	a	3	q30	DP=6495;AC=26;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	865	.	c	a	4	q30	DP=6522;AC=27;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	878	.	c	a	25	q30	DP=7157;AC=43;AF=0.0060
SIVmac239M5SpXplasmid_reference_1269-10407	879	.	c	a	32	PASS	DP=7138;AC=46;AF=0.0064
SIVmac239M5SpXplasmid_reference_1269-10407	885	.	a	c	1	q30	DP=6931;AC=23;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	885	.	a	t	1	q30	DP=6931;AC=24;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	886	.	c	a	1	q30	DP=6978;AC=24;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	888	.	t	a	7	q30	DP=6991;AC=32;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	888	.	t	g	39	PASS	DP=6991;AC=48;AF=0.0069
SIVmac239M5SpXplasmid_reference_1269-10407	889	.	t	a	13	q30	DP=6985;AC=36;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	889	.	t	g	42	PASS	DP=6985;AC=49;AF=0.0070
SIVmac239M5SpXplasmid_reference_1269-10407	890	.	c	a	3	q30	DP=6998;AC=27;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	895	.	t	g	1	q30	DP=7007;AC=24;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	896	.	g	t	1	q30	DP=7023;AC=24;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	902	.	c	a	1	q30	DP=6987;AC=23;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	905	.	g	a	2	q30	DP=6767;AC=26;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	906	.	g	a	26	q30	DP=6832;AC=42;AF=0.0061
SIVmac239M5SpXplasmid_reference_1269-10407	906	.	g	t	22	q30	DP=6832;AC=40;AF=0.0059
SIVmac239M5SpXplasmid_reference_1269-10407	907	.	g	a	16	q30	DP=6846;AC=37;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	907	.	g	t	4	q30	DP=6846;AC=28;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	908	.	c	a	88	PASS	DP=6836;AC=62;AF=0.0091
SIVmac239M5SpXplasmid_reference_1269-10407	909	.	c	a	16	q30	DP=6843;AC=37;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	914	.	g	t	5	q30	DP=6834;AC=29;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	915	.	a	g	5	q30	DP=6753;AC=29;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	917	.	c	a	2	q30	DP=6774;AC=25;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	918	.	c	a	27	q30	DP=6770;AC=42;AF=0.0062
SIVmac239M5SpXplasmid_reference_1269-10407	920	.	t	g	8	q30	DP=7037;AC=33;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	921	.	t	g	9	q30	DP=6976;AC=33;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	922	.	t	a	1	q30	DP=6970;AC=25;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	923	.	c	a	18	q30	DP=6967;AC=39;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	928	.	c	a	16	q30	DP=7064;AC=38;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	929	.	t	a	1	q30	DP=6891;AC=24;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	929	.	t	g	9	q30	DP=6891;AC=33;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	937	.	c	a	3	q30	DP=7146;AC=28;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	939	.	g	t	6	q30	DP=6554;AC=29;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	941	.	t	a	21	q30	DP=6472;AC=38;AF=0.0059
SIVmac239M5SpXplasmid_reference_1269-10407	941	.	t	c	1	q30	DP=6472;AC=22;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	942	.	t	a	1	q30	DP=6441;AC=21;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	942	.	t	g	4	q30	DP=6441;AC=27;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	943	.	c	a	6	q30	DP=6464;AC=29;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	946	.	c	a	2	q30	DP=6433;AC=24;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	948	.	a	c	1	q30	DP=6373;AC=21;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	949	.	a	c	2	q30	DP=6330;AC=24;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	950	.	a	c	1	q30	DP=6323;AC=22;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	952	.	t	a	1	q30	DP=6303;AC=22;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	952	.	t	g	1	q30	DP=6303;AC=22;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	953	.	t	a	8	q30	DP=6301;AC=30;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	953	.	t	g	8	q30	DP=6301;AC=30;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	962	.	g	t	1	q30	DP=6265;AC=22;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	973	.	t	a	1	q30	DP=5882;AC=20;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	973	.	t	g	1	q30	DP=5882;AC=20;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	975	.	c	a	6	q30	DP=5847;AC=26;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	978	.	c	a	2	q30	DP=5733;AC=22;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	986	.	a	c	1	q30	DP=5577;AC=18;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	988	.	t	g	2	q30	DP=5502;AC=21;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	990	.	g	a	4	q30	DP=5206;AC=22;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	996	.	c	a	1	q30	DP=5241;AC=17;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	997	.	t	g	7	q30	DP=5206;AC=24;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	998	.	c	a	2	q30	DP=5219;AC=20;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	1004	.	c	a	18	q30	DP=5057;AC=30;AF=0.0059
SIVmac239M5SpXplasmid_reference_1269-10407	1007	.	c	a	2	q30	DP=4495;AC=17;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	1008	.	t	g	2	q30	DP=4400;AC=17;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	1009	.	g	t	4	q30	DP=4418;AC=19;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	1011	.	t	a	1	q30	DP=4430;AC=15;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	1011	.	t	g	1	q30	DP=4430;AC=14;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	1012	.	t	g	12	q30	DP=4423;AC=24;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	1013	.	c	a	1	q30	DP=4343;AC=15;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	1018	.	t	g	8	q30	DP=4293;AC=21;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	1024	.	c	a	11	q30	DP=4258;AC=23;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	1025	.	c	a	20	q30	DP=4259;AC=27;AF=0.0063
SIVmac239M5SpXplasmid_reference_1269-10407	1025	.	c	t	2	q30	DP=4259;AC=16;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	1026	.	c	a	14	q30	DP=4233;AC=24;AF=0.0057
SIVmac239M5SpXplasmid_reference_1269-10407	1030	.	t	g	39	PASS	DP=4185;AC=33;AF=0.0079
SIVmac239M5SpXplasmid_reference_1269-10407	1031	.	t	g	25	q30	DP=4116;AC=28;AF=0.0068
SIVmac239M5SpXplasmid_reference_1269-10407	1033	.	c	a	1	q30	DP=4043;AC=13;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	1037	.	c	a	1	q30	DP=4048;AC=13;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	1038	.	t	g	39	PASS	DP=4009;AC=32;AF=0.0080
SIVmac239M5SpXplasmid_reference_1269-10407	1041	.	t	c	1	q30	DP=3934;AC=13;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	1041	.	t	g	19	q30	DP=3934;AC=25;AF=0.0064
SIVmac239M5SpXplasmid_reference_1269-10407	1043	.	c	a	5	q30	DP=3958;AC=18;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	1044	.	t	g	11	q30	DP=3907;AC=21;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	1046	.	a	c	2	q30	DP=3878;AC=15;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	1047	.	a	c	6	q30	DP=3872;AC=18;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	1047	.	a	g	7	q30	DP=3872;AC=19;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	1048	.	g	t	2	q30	DP=3862;AC=14;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	1049	.	g	t	31	PASS	DP=3703;AC=28;AF=0.0076
SIVmac239M5SpXplasmid_reference_1269-10407	1050	.	g	t	7	q30	DP=3737;AC=18;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	1052	.	c	a	9	q30	DP=3708;AC=19;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	1053	.	t	g	1	q30	DP=3677;AC=12;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	1054	.	g	t	3	q30	DP=3754;AC=15;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	1055	.	g	a	2	q30	DP=3790;AC=14;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	1055	.	g	t	4	q30	DP=3790;AC=16;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	1057	.	t	g	52	PASS	DP=3885;AC=35;AF=0.0090
SIVmac239M5SpXplasmid_reference_1269-10407	1059	.	t	a	1	q30	DP=3850;AC=12;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	1059	.	t	g	13	q30	DP=3850;AC=22;AF=0.0057
SIVmac239M5SpXplasmid_reference_1269-10407	1060	.	g	t	3	q30	DP=3880;AC=16;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	1063	.	t	g	100	PASS	DP=3854;AC=51;AF=0.0132
SIVmac239M5SpXplasmid_reference_1269-10407	1064	.	c	a	16	q30	DP=3818;AC=23;AF=0.0060
SIVmac239M5SpXplasmid_reference_1269-10407	1064	.	c	t	1	q30	DP=3818;AC=12;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	1065	.	c	a	28	q30	DP=3729;AC=27;AF=0.0072
SIVmac239M5SpXplasmid_reference_1269-10407	1066	.	c	a	11	q30	DP=3700;AC=20;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	1066	.	c	g	1	q30	DP=3700;AC=13;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	1067	.	a	g	9	q30	DP=3699;AC=19;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	1068	.	c	a	11	q30	DP=3835;AC=21;AF=0.0055
SIVmac239M5SpXplasmid_reference_1269-10407	1069	.	c	a	33	PASS	DP=3786;AC=29;AF=0.0077
SIVmac239M5SpXplasmid_reference_1269-10407	1070	.	c	a	4	q30	DP=3769;AC=16;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	1071	.	t	a	2	q30	DP=3763;AC=14;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	1071	.	t	g	10	q30	DP=3763;AC=20;AF=0.0053
SIVmac239M5SpXplasmid_reference_1269-10407	1074	.	a	c	2	q30	DP=3831;AC=14;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	1075	.	a	c	1	q30	DP=3853;AC=13;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	1076	.	g	t	1	q30	DP=3852;AC=12;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	1077	.	a	g	1	q30	DP=3701;AC=13;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	1078	.	a	g	4	q30	DP=3701;AC=16;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	1079	.	a	c	1	q30	DP=3698;AC=12;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	1080	.	t	g	12	q30	DP=3709;AC=21;AF=0.0057
SIVmac239M5SpXplasmid_reference_1269-10407	1081	.	g	t	1	q30	DP=3727;AC=12;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	1082	.	c	a	5	q30	DP=3717;AC=17;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	1083	.	t	g	38	PASS	DP=3695;AC=30;AF=0.0081
SIVmac239M5SpXplasmid_reference_1269-10407	1084	.	g	t	1	q30	DP=3698;AC=13;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	1085	.	a	c	2	q30	DP=3690;AC=14;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	1085	.	a	g	2	q30	DP=3690;AC=14;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	1086	.	c	a	6	q30	DP=3690;AC=17;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	1089	.	c	a	12	q30	DP=3709;AC=21;AF=0.0057
SIVmac239M5SpXplasmid_reference_1269-10407	1089	.	c	g	1	q30	DP=3709;AC=12;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	1090	.	t	g	45	PASS	DP=3706;AC=32;AF=0.0086
SIVmac239M5SpXplasmid_reference_1269-10407	1091	.	t	g	45	PASS	DP=3724;AC=32;AF=0.0086
SIVmac239M5SpXplasmid_reference_1269-10407	1093	.	t	a	16	q30	DP=3821;AC=23;AF=0.0060
SIVmac239M5SpXplasmid_reference_1269-10407	1093	.	t	g	100	PASS	DP=3821;AC=53;AF=0.0139
SIVmac239M5SpXplasmid_reference_1269-10407	1094	.	c	a	12	q30	DP=3799;AC=21;AF=0.0055
SIVmac239M5SpXplasmid_reference_1269-10407	1095	.	a	c	18	q30	DP=3788;AC=24;AF=0.0063
SIVmac239M5SpXplasmid_reference_1269-10407	1096	.	a	c	36	PASS	DP=3782;AC=30;AF=0.0079
SIVmac239M5SpXplasmid_reference_1269-10407	1097	.	g	t	2	q30	DP=3806;AC=14;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	1099	.	a	c	32	PASS	DP=3833;AC=29;AF=0.0076
SIVmac239M5SpXplasmid_reference_1269-10407	1099	.	a	g	8	q30	DP=3833;AC=19;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	1101	.	t	g	90	PASS	DP=3783;AC=43;AF=0.0114
SIVmac239M5SpXplasmid_reference_1269-10407	1102	.	a	c	1	q30	DP=3777;AC=12;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	1104	.	g	t	14	q30	DP=3785;AC=22;AF=0.0058
SIVmac239M5SpXplasmid_reference_1269-10407	1105	.	g	a	5	q30	DP=3779;AC=17;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	1105	.	g	t	7	q30	DP=3779;AC=18;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	1106	.	g	a	4	q30	DP=3743;AC=16;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	1106	.	g	t	10	q30	DP=3743;AC=20;AF=0.0053
SIVmac239M5SpXplasmid_reference_1269-10407	1107	.	g	a	2	q30	DP=3706;AC=14;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	1107	.	g	t	5	q30	DP=3706;AC=17;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	1108	.	g	t	1	q30	DP=3709;AC=12;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	1109	.	c	a	10	q30	DP=3706;AC=20;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	1109	.	c	t	1	q30	DP=3706;AC=12;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	1110	.	c	a	17	q30	DP=3688;AC=23;AF=0.0062
SIVmac239M5SpXplasmid_reference_1269-10407	1111	.	g	a	2	q30	DP=3694;AC=14;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	1111	.	g	t	4	q30	DP=3694;AC=16;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	1112	.	g	a	2	q30	DP=3761;AC=14;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	1112	.	g	t	10	q30	DP=3761;AC=20;AF=0.0053
SIVmac239M5SpXplasmid_reference_1269-10407	1113	.	g	t	3	q30	DP=3762;AC=15;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	1114	.	a	c	30	PASS	DP=3769;AC=28;AF=0.0074
SIVmac239M5SpXplasmid_reference_1269-10407	1114	.	a	g	1	q30	DP=3769;AC=12;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	1115	.	c	a	3	q30	DP=3798;AC=15;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	1118	.	a	c	8	q30	DP=3777;AC=19;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	1118	.	a	g	3	q30	DP=3777;AC=15;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	1120	.	g	t	2	q30	DP=3779;AC=14;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	1122	.	c	a	34	PASS	DP=3739;AC=29;AF=0.0078
SIVmac239M5SpXplasmid_reference_1269-10407	1123	.	t	a	5	q30	DP=3735;AC=17;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	1123	.	t	c	3	q30	DP=3735;AC=15;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	1123	.	t	g	12	q30	DP=3735;AC=21;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	1124	.	a	c	7	q30	DP=3746;AC=18;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	1124	.	a	g	1	q30	DP=3746;AC=12;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	1126	.	a	c	21	q30	DP=3782;AC=25;AF=0.0066
SIVmac239M5SpXplasmid_reference_1269-10407	1127	.	t	a	7	q30	DP=3759;AC=18;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	1127	.	t	g	33	PASS	DP=3759;AC=29;AF=0.0077
SIVmac239M5SpXplasmid_reference_1269-10407	1128	.	t	a	2	q30	DP=3747;AC=14;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	1128	.	t	g	37	PASS	DP=3747;AC=30;AF=0.0080
SIVmac239M5SpXplasmid_reference_1269-10407	1129	.	a	c	4	q30	DP=3699;AC=16;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	1131	.	t	g	27	q30	DP=3602;AC=26;AF=0.0072
SIVmac239M5SpXplasmid_reference_1269-10407	1132	.	g	a	2	q30	DP=3612;AC=14;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	1132	.	g	t	3	q30	DP=3612;AC=15;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	1134	.	c	a	8	q30	DP=3585;AC=18;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	1135	.	a	c	1	q30	DP=3546;AC=11;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	1136	.	g	t	1	q30	DP=3549;AC=12;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	1138	.	a	c	1	q30	DP=3541;AC=11;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	1140	.	c	a	39	PASS	DP=3622;AC=30;AF=0.0083
SIVmac239M5SpXplasmid_reference_1269-10407	1141	.	c	a	29	q30	DP=3616;AC=27;AF=0.0075
SIVmac239M5SpXplasmid_reference_1269-10407	1141	.	c	g	2	q30	DP=3616;AC=14;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	1142	.	c	a	23	q30	DP=3615;AC=25;AF=0.0069
SIVmac239M5SpXplasmid_reference_1269-10407	1143	.	t	a	2	q30	DP=3597;AC=13;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	1143	.	t	g	16	q30	DP=3597;AC=22;AF=0.0061
SIVmac239M5SpXplasmid_reference_1269-10407	1144	.	g	t	7	q30	DP=3632;AC=18;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	1145	.	a	c	13	q30	DP=3655;AC=21;AF=0.0057
SIVmac239M5SpXplasmid_reference_1269-10407	1147	.	a	c	2	q30	DP=3656;AC=13;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	1148	.	g	t	1	q30	DP=3633;AC=12;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	1149	.	a	g	8	q30	DP=3516;AC=18;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	1151	.	g	t	2	q30	DP=3526;AC=13;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	1152	.	c	a	8	q30	DP=3538;AC=18;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	1152	.	c	g	7	q30	DP=3538;AC=17;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	1153	.	c	a	52	PASS	DP=3559;AC=33;AF=0.0093
SIVmac239M5SpXplasmid_reference_1269-10407	1153	.	c	g	1	q30	DP=3559;AC=11;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	1154	.	c	a	49	PASS	DP=3531;AC=32;AF=0.0091
SIVmac239M5SpXplasmid_reference_1269-10407	1155	.	t	c	2	q30	DP=3549;AC=13;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	1155	.	t	g	3	q30	DP=3549;AC=14;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	1156	.	c	a	1	q30	DP=3567;AC=11;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	1158	.	c	a	72	PASS	DP=3620;AC=38;AF=0.0105
SIVmac239M5SpXplasmid_reference_1269-10407	1159	.	a	c	5	q30	DP=3622;AC=16;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	1160	.	c	a	100	PASS	DP=3613;AC=46;AF=0.0127
SIVmac239M5SpXplasmid_reference_1269-10407	1161	.	c	a	6	q30	DP=3593;AC=17;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	1162	.	a	c	4	q30	DP=3499;AC=15;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	1164	.	t	a	1	q30	DP=3542;AC=12;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	1164	.	t	g	22	q30	DP=3542;AC=24;AF=0.0068
SIVmac239M5SpXplasmid_reference_1269-10407	1165	.	g	t	8	q30	DP=3563;AC=18;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	1166	.	c	a	24	q30	DP=3565;AC=25;AF=0.0070
SIVmac239M5SpXplasmid_reference_1269-10407	1167	.	c	a	3	q30	DP=3503;AC=14;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	1168	.	a	c	5	q30	DP=3510;AC=16;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	1170	.	t	a	1	q30	DP=3507;AC=12;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	1170	.	t	g	53	PASS	DP=3507;AC=33;AF=0.0094
SIVmac239M5SpXplasmid_reference_1269-10407	1171	.	c	a	25	q30	DP=3529;AC=25;AF=0.0071
SIVmac239M5SpXplasmid_reference_1269-10407	1171	.	c	t	7	q30	DP=3529;AC=17;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	1172	.	c	a	85	PASS	DP=3495;AC=40;AF=0.0114
SIVmac239M5SpXplasmid_reference_1269-10407	1173	.	c	a	15	q30	DP=3486;AC=21;AF=0.0060
SIVmac239M5SpXplasmid_reference_1269-10407	1174	.	t	a	4	q30	DP=3476;AC=15;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	1174	.	t	c	1	q30	DP=3476;AC=12;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	1174	.	t	g	100	PASS	DP=3476;AC=51;AF=0.0147
SIVmac239M5SpXplasmid_reference_1269-10407	1175	.	t	g	50	PASS	DP=3471;AC=32;AF=0.0092
SIVmac239M5SpXplasmid_reference_1269-10407	1176	.	t	a	1	q30	DP=3473;AC=12;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	1176	.	t	g	63	PASS	DP=3473;AC=35;AF=0.0101
SIVmac239M5SpXplasmid_reference_1269-10407	1177	.	t	a	2	q30	DP=3455;AC=13;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	1177	.	t	g	15	q30	DP=3455;AC=21;AF=0.0061
SIVmac239M5SpXplasmid_reference_1269-10407	1178	.	g	t	7	q30	DP=3457;AC=17;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	1179	.	c	a	20	q30	DP=3464;AC=23;AF=0.0066
SIVmac239M5SpXplasmid_reference_1269-10407	1180	.	a	c	7	q30	DP=3407;AC=17;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	1181	.	g	a	3	q30	DP=3414;AC=14;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	1182	.	c	a	30	PASS	DP=3387;AC=26;AF=0.0077
SIVmac239M5SpXplasmid_reference_1269-10407	1183	.	a	c	24	q30	DP=3370;AC=24;AF=0.0071
SIVmac239M5SpXplasmid_reference_1269-10407	1184	.	g	a	3	q30	DP=3470;AC=14;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	1185	.	c	a	29	q30	DP=3441;AC=26;AF=0.0076
SIVmac239M5SpXplasmid_reference_1269-10407	1185	.	c	g	11	q30	DP=3441;AC=19;AF=0.0055
SIVmac239M5SpXplasmid_reference_1269-10407	1186	.	c	a	51	PASS	DP=3448;AC=32;AF=0.0093
SIVmac239M5SpXplasmid_reference_1269-10407	1187	.	c	a	53	PASS	DP=3516;AC=33;AF=0.0094
SIVmac239M5SpXplasmid_reference_1269-10407	1187	.	c	g	1	q30	DP=3516;AC=12;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	1188	.	a	c	17	q30	DP=3517;AC=22;AF=0.0063
SIVmac239M5SpXplasmid_reference_1269-10407	1189	.	a	c	2	q30	DP=3537;AC=13;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	1190	.	c	a	3	q30	DP=3539;AC=14;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	1191	.	a	c	17	q30	DP=3528;AC=22;AF=0.0062
SIVmac239M5SpXplasmid_reference_1269-10407	1193	.	a	c	8	q30	DP=3392;AC=17;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	1193	.	a	g	37	PASS	DP=3392;AC=28;AF=0.0083
SIVmac239M5SpXplasmid_reference_1269-10407	1194	.	g	a	3	q30	DP=3387;AC=14;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	1194	.	g	t	1	q30	DP=3387;AC=11;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	1195	.	g	t	6	q30	DP=3376;AC=16;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	1196	.	g	t	5	q30	DP=3266;AC=15;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	1197	.	g	a	1	q30	DP=3324;AC=11;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	1197	.	g	t	5	q30	DP=3324;AC=15;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	1198	.	a	c	10	q30	DP=3301;AC=18;AF=0.0055
SIVmac239M5SpXplasmid_reference_1269-10407	1199	.	c	a	59	PASS	DP=3294;AC=33;AF=0.0100
SIVmac239M5SpXplasmid_reference_1269-10407	1200	.	c	a	23	q30	DP=3291;AC=23;AF=0.0070
SIVmac239M5SpXplasmid_reference_1269-10407	1201	.	a	c	32	PASS	DP=3290;AC=26;AF=0.0079
SIVmac239M5SpXplasmid_reference_1269-10407	1202	.	a	c	10	q30	DP=3289;AC=18;AF=0.0055
SIVmac239M5SpXplasmid_reference_1269-10407	1203	.	g	t	4	q30	DP=3304;AC=14;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	1204	.	a	c	15	q30	DP=3282;AC=20;AF=0.0061
SIVmac239M5SpXplasmid_reference_1269-10407	1205	.	a	c	2	q30	DP=3243;AC=12;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	1205	.	a	t	1	q30	DP=3243;AC=11;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	1206	.	a	c	11	q30	DP=3238;AC=18;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	1207	.	g	a	1	q30	DP=3276;AC=11;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	1208	.	c	a	15	q30	DP=3286;AC=20;AF=0.0061
SIVmac239M5SpXplasmid_reference_1269-10407	1208	.	c	g	3	q30	DP=3286;AC=13;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	1209	.	c	a	32	PASS	DP=3273;AC=26;AF=0.0079
SIVmac239M5SpXplasmid_reference_1269-10407	1210	.	a	c	32	PASS	DP=3272;AC=26;AF=0.0079
SIVmac239M5SpXplasmid_reference_1269-10407	1211	.	a	c	26	q30	DP=3282;AC=24;AF=0.0073
SIVmac239M5SpXplasmid_reference_1269-10407	1212	.	t	a	17	q30	DP=3285;AC=21;AF=0.0064
SIVmac239M5SpXplasmid_reference_1269-10407	1212	.	t	c	5	q30	DP=3285;AC=15;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	1212	.	t	g	64	PASS	DP=3285;AC=34;AF=0.0104
SIVmac239M5SpXplasmid_reference_1269-10407	1213	.	t	a	20	q30	DP=3292;AC=22;AF=0.0067
SIVmac239M5SpXplasmid_reference_1269-10407	1213	.	t	c	7	q30	DP=3292;AC=16;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	1213	.	t	g	51	PASS	DP=3292;AC=31;AF=0.0094
SIVmac239M5SpXplasmid_reference_1269-10407	1214	.	a	c	29	q30	DP=3299;AC=25;AF=0.0076
SIVmac239M5SpXplasmid_reference_1269-10407	1214	.	a	t	3	q30	DP=3299;AC=13;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	1215	.	a	c	29	q30	DP=3279;AC=25;AF=0.0076
SIVmac239M5SpXplasmid_reference_1269-10407	1216	.	g	t	5	q30	DP=3341;AC=15;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	1217	.	t	a	12	q30	DP=3339;AC=19;AF=0.0057
SIVmac239M5SpXplasmid_reference_1269-10407	1217	.	t	c	4	q30	DP=3339;AC=14;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	1217	.	t	g	100	PASS	DP=3339;AC=42;AF=0.0126
SIVmac239M5SpXplasmid_reference_1269-10407	1218	.	g	t	1	q30	DP=3348;AC=11;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	1219	.	t	a	10	q30	DP=3336;AC=18;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	1219	.	t	c	1	q30	DP=3336;AC=11;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	1219	.	t	g	38	PASS	DP=3336;AC=28;AF=0.0084
SIVmac239M5SpXplasmid_reference_1269-10407	1220	.	t	c	2	q30	DP=3331;AC=12;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	1220	.	t	g	10	q30	DP=3331;AC=18;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	1221	.	g	t	3	q30	DP=3331;AC=13;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	1222	.	g	a	1	q30	DP=3346;AC=11;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	1222	.	g	t	6	q30	DP=3346;AC=16;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	1223	.	a	c	10	q30	DP=3343;AC=18;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	1224	.	a	c	10	q30	DP=3328;AC=18;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	1225	.	t	a	20	q30	DP=3299;AC=22;AF=0.0067
SIVmac239M5SpXplasmid_reference_1269-10407	1225	.	t	c	1	q30	DP=3299;AC=11;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	1225	.	t	g	92	PASS	DP=3299;AC=40;AF=0.0121
SIVmac239M5SpXplasmid_reference_1269-10407	1226	.	t	g	36	PASS	DP=3257;AC=27;AF=0.0083
SIVmac239M5SpXplasmid_reference_1269-10407	1228	.	t	a	5	q30	DP=3260;AC=15;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	1228	.	t	c	2	q30	DP=3260;AC=12;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	1228	.	t	g	47	PASS	DP=3260;AC=30;AF=0.0092
SIVmac239M5SpXplasmid_reference_1269-10407	1229	.	g	a	3	q30	DP=3262;AC=13;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	1229	.	g	t	20	q30	DP=3262;AC=22;AF=0.0067
SIVmac239M5SpXplasmid_reference_1269-10407	1230	.	g	t	2	q30	DP=3247;AC=12;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	1232	.	a	c	7	q30	DP=3240;AC=16;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	1233	.	a	c	1	q30	DP=3270;AC=10;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	1234	.	a	c	3	q30	DP=3256;AC=13;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	1236	.	a	c	4	q30	DP=3285;AC=14;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	1236	.	a	g	12	q30	DP=3285;AC=19;AF=0.0058
SIVmac239M5SpXplasmid_reference_1269-10407	1239	.	g	t	22	q30	DP=3300;AC=23;AF=0.0070
SIVmac239M5SpXplasmid_reference_1269-10407	1241	.	c	a	15	q30	DP=3290;AC=20;AF=0.0061
SIVmac239M5SpXplasmid_reference_1269-10407	1242	.	a	c	2	q30	DP=3249;AC=12;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	1242	.	a	g	1	q30	DP=3249;AC=10;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	1243	.	c	a	77	PASS	DP=3303;AC=37;AF=0.0112
SIVmac239M5SpXplasmid_reference_1269-10407	1244	.	t	a	26	q30	DP=3240;AC=24;AF=0.0074
SIVmac239M5SpXplasmid_reference_1269-10407	1244	.	t	c	15	q30	DP=3240;AC=20;AF=0.0062
SIVmac239M5SpXplasmid_reference_1269-10407	1244	.	t	g	18	q30	DP=3240;AC=21;AF=0.0065
SIVmac239M5SpXplasmid_reference_1269-10407	1245	.	c	a	15	q30	DP=3480;AC=21;AF=0.0060
SIVmac239M5SpXplasmid_reference_1269-10407	1246	.	t	a	3	q30	DP=3478;AC=14;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	1246	.	t	g	9	q30	DP=3478;AC=18;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	1248	.	c	a	62	PASS	DP=3486;AC=35;AF=0.0100
SIVmac239M5SpXplasmid_reference_1269-10407	1249	.	a	c	1	q30	DP=3475;AC=12;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	1252	.	g	a	1	q30	DP=3533;AC=11;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	1252	.	g	t	10	q30	DP=3533;AC=19;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	1253	.	c	a	45	PASS	DP=3524;AC=31;AF=0.0088
SIVmac239M5SpXplasmid_reference_1269-10407	1253	.	c	g	3	q30	DP=3524;AC=14;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	1256	.	t	g	6	q30	DP=3375;AC=16;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	1258	.	c	a	9	q30	DP=3419;AC=18;AF=0.0053
SIVmac239M5SpXplasmid_reference_1269-10407	1261	.	a	c	1	q30	DP=3303;AC=11;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	1261	.	a	g	32	PASS	DP=3303;AC=26;AF=0.0079
SIVmac239M5SpXplasmid_reference_1269-10407	1263	.	c	a	21	q30	DP=3397;AC=23;AF=0.0068
SIVmac239M5SpXplasmid_reference_1269-10407	1263	.	c	g	5	q30	DP=3397;AC=15;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	1264	.	c	a	74	PASS	DP=3415;AC=37;AF=0.0108
SIVmac239M5SpXplasmid_reference_1269-10407	1264	.	c	t	1	q30	DP=3415;AC=12;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	1265	.	c	a	11	q30	DP=3414;AC=19;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	1265	.	c	t	2	q30	DP=3414;AC=13;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	1266	.	c	a	39	PASS	DP=3465;AC=29;AF=0.0084
SIVmac239M5SpXplasmid_reference_1269-10407	1268	.	a	c	1	q30	DP=3441;AC=11;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	1269	.	g	t	2	q30	DP=3479;AC=13;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	1270	.	a	c	2	q30	DP=3473;AC=13;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	1270	.	a	g	5	q30	DP=3473;AC=16;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	1271	.	a	c	1	q30	DP=3409;AC=11;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	1271	.	a	g	2	q30	DP=3409;AC=13;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	1273	.	a	g	30	PASS	DP=3382;AC=26;AF=0.0077
SIVmac239M5SpXplasmid_reference_1269-10407	1274	.	c	a	41	PASS	DP=3392;AC=29;AF=0.0085
SIVmac239M5SpXplasmid_reference_1269-10407	1276	.	g	t	6	q30	DP=3349;AC=16;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	1277	.	g	t	21	q30	DP=3364;AC=23;AF=0.0068
SIVmac239M5SpXplasmid_reference_1269-10407	1279	.	a	c	1	q30	DP=3354;AC=11;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	1280	.	t	g	14	q30	DP=3351;AC=20;AF=0.0060
SIVmac239M5SpXplasmid_reference_1269-10407	1282	.	c	a	5	q30	DP=3352;AC=15;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	1283	.	t	a	2	q30	DP=3356;AC=13;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	1283	.	t	g	10	q30	DP=3356;AC=18;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	1285	.	g	t	5	q30	DP=3349;AC=15;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	1286	.	a	c	6	q30	DP=3354;AC=16;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	1286	.	a	g	1	q30	DP=3354;AC=11;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	1287	.	a	c	12	q30	DP=3345;AC=19;AF=0.0057
SIVmac239M5SpXplasmid_reference_1269-10407	1289	.	t	g	42	PASS	DP=3310;AC=29;AF=0.0088
SIVmac239M5SpXplasmid_reference_1269-10407	1291	.	t	a	1	q30	DP=3314;AC=11;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	1291	.	t	g	10	q30	DP=3314;AC=18;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	1292	.	g	t	2	q30	DP=3284;AC=12;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	1294	.	a	t	3	q30	DP=3301;AC=13;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	1295	.	a	g	1	q30	DP=3346;AC=11;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	1299	.	t	g	10	q30	DP=3292;AC=18;AF=0.0055
SIVmac239M5SpXplasmid_reference_1269-10407	1300	.	g	t	2	q30	DP=3299;AC=12;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	1303	.	c	a	5	q30	DP=3342;AC=15;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	1304	.	c	a	5	q30	DP=3308;AC=15;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	1304	.	c	g	3	q30	DP=3308;AC=13;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	1305	.	a	c	5	q30	DP=3353;AC=15;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	1306	.	t	g	13	q30	DP=3424;AC=20;AF=0.0058
SIVmac239M5SpXplasmid_reference_1269-10407	1308	.	t	c	1	q30	DP=3540;AC=11;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	1308	.	t	g	4	q30	DP=3540;AC=15;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	1309	.	t	g	14	q30	DP=3549;AC=21;AF=0.0059
SIVmac239M5SpXplasmid_reference_1269-10407	1311	.	t	g	1	q30	DP=3522;AC=12;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	1312	.	g	t	12	q30	DP=3521;AC=20;AF=0.0057
SIVmac239M5SpXplasmid_reference_1269-10407	1313	.	g	a	1	q30	DP=3539;AC=11;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	1313	.	g	t	1	q30	DP=3539;AC=11;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	1314	.	c	a	5	q30	DP=3514;AC=16;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	1315	.	c	a	39	PASS	DP=3467;AC=29;AF=0.0084
SIVmac239M5SpXplasmid_reference_1269-10407	1318	.	a	c	2	q30	DP=3371;AC=13;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	1319	.	t	g	3	q30	DP=3437;AC=14;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	1321	.	c	a	12	q30	DP=3493;AC=20;AF=0.0057
SIVmac239M5SpXplasmid_reference_1269-10407	1322	.	c	a	3	q30	DP=3494;AC=14;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	1322	.	c	t	1	q30	DP=3494;AC=12;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	1323	.	c	a	3	q30	DP=3504;AC=14;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	1324	.	a	g	5	q30	DP=3516;AC=16;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	1326	.	a	c	5	q30	DP=3518;AC=16;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	1326	.	a	g	3	q30	DP=3518;AC=14;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	1327	.	c	a	1	q30	DP=3528;AC=11;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	1328	.	a	c	1	q30	DP=3455;AC=11;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	1328	.	a	g	1	q30	DP=3455;AC=11;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	1330	.	a	g	13	q30	DP=3460;AC=20;AF=0.0058
SIVmac239M5SpXplasmid_reference_1269-10407	1331	.	c	a	1	q30	DP=3468;AC=11;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	1332	.	a	c	1	q30	DP=3455;AC=12;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	1332	.	a	g	1	q30	DP=3455;AC=12;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	1333	.	g	t	13	q30	DP=3469;AC=20;AF=0.0058
SIVmac239M5SpXplasmid_reference_1269-10407	1334	.	g	t	7	q30	DP=3461;AC=17;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	1335	.	c	a	1	q30	DP=3458;AC=12;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	1336	.	g	t	23	q30	DP=3447;AC=24;AF=0.0070
SIVmac239M5SpXplasmid_reference_1269-10407	1337	.	g	t	32	PASS	DP=3467;AC=27;AF=0.0078
SIVmac239M5SpXplasmid_reference_1269-10407	1338	.	g	t	17	q30	DP=3475;AC=22;AF=0.0063
SIVmac239M5SpXplasmid_reference_1269-10407	1339	.	t	a	100	PASS	DP=3439;AC=43;AF=0.0125
SIVmac239M5SpXplasmid_reference_1269-10407	1339	.	t	c	15	q30	DP=3439;AC=21;AF=0.0061
SIVmac239M5SpXplasmid_reference_1269-10407	1339	.	t	g	100	PASS	DP=3439;AC=85;AF=0.0247
SIVmac239M5SpXplasmid_reference_1269-10407	1340	.	t	a	11	q30	DP=3447;AC=19;AF=0.0055
SIVmac239M5SpXplasmid_reference_1269-10407	1340	.	t	g	43	PASS	DP=3447;AC=30;AF=0.0087
SIVmac239M5SpXplasmid_reference_1269-10407	1341	.	t	a	3	q30	DP=3515;AC=14;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	1341	.	t	g	22	q30	DP=3515;AC=24;AF=0.0068
SIVmac239M5SpXplasmid_reference_1269-10407	1342	.	t	g	22	q30	DP=3509;AC=24;AF=0.0068
SIVmac239M5SpXplasmid_reference_1269-10407	1343	.	t	g	31	PASS	DP=3517;AC=27;AF=0.0077
SIVmac239M5SpXplasmid_reference_1269-10407	1344	.	t	g	19	q30	DP=3516;AC=23;AF=0.0065
SIVmac239M5SpXplasmid_reference_1269-10407	1345	.	a	c	2	q30	DP=3506;AC=13;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	1345	.	a	t	4	q30	DP=3506;AC=15;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	1346	.	g	a	38	PASS	DP=3504;AC=29;AF=0.0083
SIVmac239M5SpXplasmid_reference_1269-10407	1346	.	g	c	7	q30	DP=3504;AC=17;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	1346	.	g	t	22	q30	DP=3504;AC=24;AF=0.0068
SIVmac239M5SpXplasmid_reference_1269-10407	1347	.	g	a	4	q30	DP=3529;AC=15;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	1347	.	g	t	41	PASS	DP=3529;AC=30;AF=0.0085
SIVmac239M5SpXplasmid_reference_1269-10407	1348	.	c	a	31	PASS	DP=3527;AC=27;AF=0.0077
SIVmac239M5SpXplasmid_reference_1269-10407	1348	.	c	g	3	q30	DP=3527;AC=14;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	1348	.	c	t	4	q30	DP=3527;AC=15;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	1349	.	c	a	8	q30	DP=3525;AC=18;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	1350	.	t	c	39	PASS	DP=3470;AC=29;AF=0.0084
SIVmac239M5SpXplasmid_reference_1269-10407	1350	.	t	g	39	PASS	DP=3470;AC=29;AF=0.0084
SIVmac239M5SpXplasmid_reference_1269-10407	1351	.	t	g	2	q30	DP=3468;AC=13;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	1352	.	g	t	100	PASS	DP=3506;AC=50;AF=0.0143
SIVmac239M5SpXplasmid_reference_1269-10407	1353	.	g	t	8	q30	DP=3571;AC=18;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	1354	.	t	g	78	PASS	DP=3571;AC=39;AF=0.0109
SIVmac239M5SpXplasmid_reference_1269-10407	1355	.	c	a	14	q30	DP=3574;AC=21;AF=0.0059
SIVmac239M5SpXplasmid_reference_1269-10407	1355	.	c	g	2	q30	DP=3574;AC=13;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	1355	.	c	t	100	PASS	DP=3574;AC=45;AF=0.0126
SIVmac239M5SpXplasmid_reference_1269-10407	1356	.	c	a	12	q30	DP=3530;AC=20;AF=0.0057
SIVmac239M5SpXplasmid_reference_1269-10407	1356	.	c	g	1	q30	DP=3530;AC=11;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	1356	.	c	t	3	q30	DP=3530;AC=14;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	1357	.	a	c	99	PASS	DP=3529;AC=43;AF=0.0122
SIVmac239M5SpXplasmid_reference_1269-10407	1357	.	a	g	2	q30	DP=3529;AC=13;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	1358	.	t	a	1	q30	DP=3521;AC=11;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	1358	.	t	g	5	q30	DP=3521;AC=16;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	1359	.	g	t	65	PASS	DP=3551;AC=36;AF=0.0101
SIVmac239M5SpXplasmid_reference_1269-10407	1360	.	g	t	16	q30	DP=3579;AC=22;AF=0.0061
SIVmac239M5SpXplasmid_reference_1269-10407	1361	.	g	t	3	q30	DP=3584;AC=14;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	1362	.	g	a	1	q30	DP=3568;AC=11;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	1362	.	g	t	6	q30	DP=3568;AC=17;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	1363	.	a	c	65	PASS	DP=3543;AC=36;AF=0.0102
SIVmac239M5SpXplasmid_reference_1269-10407	1363	.	a	g	49	PASS	DP=3543;AC=32;AF=0.0090
SIVmac239M5SpXplasmid_reference_1269-10407	1363	.	a	t	10	q30	DP=3543;AC=19;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	1364	.	a	c	18	q30	DP=3594;AC=23;AF=0.0064
SIVmac239M5SpXplasmid_reference_1269-10407	1364	.	a	t	3	q30	DP=3594;AC=14;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	1366	.	g	a	1	q30	DP=3581;AC=12;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	1367	.	a	c	12	q30	DP=3567;AC=20;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	1367	.	a	g	10	q30	DP=3567;AC=19;AF=0.0053
SIVmac239M5SpXplasmid_reference_1269-10407	1368	.	a	c	1	q30	DP=3517;AC=12;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	1368	.	a	g	8	q30	DP=3517;AC=18;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	1369	.	g	a	25	q30	DP=3516;AC=25;AF=0.0071
SIVmac239M5SpXplasmid_reference_1269-10407	1369	.	g	t	8	q30	DP=3516;AC=18;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	1370	.	c	a	42	PASS	DP=3513;AC=30;AF=0.0085
SIVmac239M5SpXplasmid_reference_1269-10407	1370	.	c	g	1	q30	DP=3513;AC=11;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	1371	.	c	a	20	q30	DP=3476;AC=23;AF=0.0066
SIVmac239M5SpXplasmid_reference_1269-10407	1372	.	c	a	54	PASS	DP=3476;AC=33;AF=0.0095
SIVmac239M5SpXplasmid_reference_1269-10407	1372	.	c	t	1	q30	DP=3476;AC=11;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	1373	.	c	a	15	q30	DP=3454;AC=21;AF=0.0061
SIVmac239M5SpXplasmid_reference_1269-10407	1374	.	g	c	3	q30	DP=3496;AC=14;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	1374	.	g	t	3	q30	DP=3496;AC=14;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	1375	.	c	a	12	q30	DP=3531;AC=20;AF=0.0057
SIVmac239M5SpXplasmid_reference_1269-10407	1375	.	c	g	1	q30	DP=3531;AC=12;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	1376	.	a	c	100	PASS	DP=3554;AC=44;AF=0.0124
SIVmac239M5SpXplasmid_reference_1269-10407	1376	.	a	g	6	q30	DP=3554;AC=17;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	1377	.	a	c	12	q30	DP=3567;AC=20;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	1378	.	t	a	12	q30	DP=3566;AC=20;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	1378	.	t	g	37	PASS	DP=3566;AC=29;AF=0.0081
SIVmac239M5SpXplasmid_reference_1269-10407	1379	.	t	a	3	q30	DP=3570;AC=14;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	1379	.	t	g	100	PASS	DP=3570;AC=48;AF=0.0134
SIVmac239M5SpXplasmid_reference_1269-10407	1380	.	t	a	4	q30	DP=3574;AC=15;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	1380	.	t	g	100	PASS	DP=3574;AC=50;AF=0.0140
SIVmac239M5SpXplasmid_reference_1269-10407	1381	.	c	a	6	q30	DP=3594;AC=17;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	1381	.	c	t	5	q30	DP=3594;AC=16;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	1382	.	c	a	47	PASS	DP=3594;AC=32;AF=0.0089
SIVmac239M5SpXplasmid_reference_1269-10407	1382	.	c	t	6	q30	DP=3594;AC=17;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	1383	.	c	a	33	PASS	DP=3609;AC=28;AF=0.0078
SIVmac239M5SpXplasmid_reference_1269-10407	1384	.	c	a	89	PASS	DP=3545;AC=41;AF=0.0116
SIVmac239M5SpXplasmid_reference_1269-10407	1384	.	c	g	1	q30	DP=3545;AC=12;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	1385	.	a	c	79	PASS	DP=3542;AC=39;AF=0.0110
SIVmac239M5SpXplasmid_reference_1269-10407	1385	.	a	t	1	q30	DP=3542;AC=12;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	1386	.	t	a	1	q30	DP=3567;AC=12;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	1386	.	t	g	5	q30	DP=3567;AC=16;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	1387	.	g	t	60	PASS	DP=3574;AC=35;AF=0.0098
SIVmac239M5SpXplasmid_reference_1269-10407	1388	.	g	t	2	q30	DP=3670;AC=14;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	1389	.	c	a	9	q30	DP=3665;AC=19;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	1389	.	c	t	1	q30	DP=3665;AC=12;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	1390	.	t	a	6	q30	DP=3643;AC=17;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	1390	.	t	c	100	PASS	DP=3643;AC=80;AF=0.0220
SIVmac239M5SpXplasmid_reference_1269-10407	1390	.	t	g	15	q30	DP=3643;AC=22;AF=0.0060
SIVmac239M5SpXplasmid_reference_1269-10407	1391	.	c	a	23	q30	DP=3655;AC=25;AF=0.0068
SIVmac239M5SpXplasmid_reference_1269-10407	1391	.	c	g	2	q30	DP=3655;AC=13;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	1392	.	a	c	94	PASS	DP=3662;AC=43;AF=0.0117
SIVmac239M5SpXplasmid_reference_1269-10407	1394	.	g	a	14	q30	DP=3748;AC=22;AF=0.0059
SIVmac239M5SpXplasmid_reference_1269-10407	1394	.	g	t	5	q30	DP=3748;AC=17;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	1395	.	t	c	1	q30	DP=3733;AC=12;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	1395	.	t	g	44	PASS	DP=3733;AC=32;AF=0.0086
SIVmac239M5SpXplasmid_reference_1269-10407	1396	.	g	t	52	PASS	DP=3716;AC=34;AF=0.0091
SIVmac239M5SpXplasmid_reference_1269-10407	1397	.	c	a	1	q30	DP=3705;AC=13;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	1398	.	a	c	48	PASS	DP=3730;AC=33;AF=0.0088
SIVmac239M5SpXplasmid_reference_1269-10407	1398	.	a	g	1	q30	DP=3730;AC=13;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	1399	.	t	a	37	PASS	DP=3741;AC=30;AF=0.0080
SIVmac239M5SpXplasmid_reference_1269-10407	1399	.	t	c	1	q30	DP=3741;AC=13;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	1399	.	t	g	52	PASS	DP=3741;AC=34;AF=0.0091
SIVmac239M5SpXplasmid_reference_1269-10407	1400	.	c	a	27	q30	DP=3737;AC=27;AF=0.0072
SIVmac239M5SpXplasmid_reference_1269-10407	1400	.	c	t	8	q30	DP=3737;AC=19;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	1401	.	a	c	100	PASS	DP=3726;AC=56;AF=0.0150
SIVmac239M5SpXplasmid_reference_1269-10407	1401	.	a	g	1	q30	DP=3726;AC=12;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	1401	.	a	t	19	q30	DP=3726;AC=24;AF=0.0064
SIVmac239M5SpXplasmid_reference_1269-10407	1402	.	g	a	9	q30	DP=3723;AC=19;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	1402	.	g	t	2	q30	DP=3723;AC=14;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	1403	.	g	t	6	q30	DP=3703;AC=17;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	1404	.	g	a	14	q30	DP=3732;AC=22;AF=0.0059
SIVmac239M5SpXplasmid_reference_1269-10407	1404	.	g	t	3	q30	DP=3732;AC=15;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	1405	.	g	t	3	q30	DP=3811;AC=15;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	1406	.	c	a	40	PASS	DP=3769;AC=31;AF=0.0082
SIVmac239M5SpXplasmid_reference_1269-10407	1407	.	t	a	6	q30	DP=3705;AC=17;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	1407	.	t	c	7	q30	DP=3705;AC=18;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	1407	.	t	g	57	PASS	DP=3705;AC=35;AF=0.0094
SIVmac239M5SpXplasmid_reference_1269-10407	1408	.	g	t	10	q30	DP=3777;AC=20;AF=0.0053
SIVmac239M5SpXplasmid_reference_1269-10407	1409	.	a	c	10	q30	DP=3808;AC=20;AF=0.0053
SIVmac239M5SpXplasmid_reference_1269-10407	1409	.	a	g	1	q30	DP=3808;AC=12;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	1410	.	t	a	32	PASS	DP=3813;AC=29;AF=0.0076
SIVmac239M5SpXplasmid_reference_1269-10407	1410	.	t	g	16	q30	DP=3813;AC=23;AF=0.0060
SIVmac239M5SpXplasmid_reference_1269-10407	1411	.	g	t	13	q30	DP=3823;AC=22;AF=0.0058
SIVmac239M5SpXplasmid_reference_1269-10407	1412	.	c	a	84	PASS	DP=3822;AC=42;AF=0.0110
SIVmac239M5SpXplasmid_reference_1269-10407	1412	.	c	g	5	q30	DP=3822;AC=17;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	1413	.	c	a	32	PASS	DP=3838;AC=29;AF=0.0076
SIVmac239M5SpXplasmid_reference_1269-10407	1413	.	c	g	2	q30	DP=3838;AC=14;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	1414	.	a	c	94	PASS	DP=3828;AC=44;AF=0.0115
SIVmac239M5SpXplasmid_reference_1269-10407	1415	.	a	c	6	q30	DP=3848;AC=18;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	1415	.	a	g	2	q30	DP=3848;AC=14;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	1416	.	c	a	28	q30	DP=3874;AC=28;AF=0.0072
SIVmac239M5SpXplasmid_reference_1269-10407	1417	.	t	c	26	q30	DP=3803;AC=27;AF=0.0071
SIVmac239M5SpXplasmid_reference_1269-10407	1417	.	t	g	50	PASS	DP=3803;AC=34;AF=0.0089
SIVmac239M5SpXplasmid_reference_1269-10407	1418	.	g	a	1	q30	DP=3840;AC=13;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	1418	.	g	t	4	q30	DP=3840;AC=16;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	1419	.	c	a	20	q30	DP=3840;AC=25;AF=0.0065
SIVmac239M5SpXplasmid_reference_1269-10407	1419	.	c	g	3	q30	DP=3840;AC=15;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	1420	.	t	a	23	q30	DP=3864;AC=26;AF=0.0067
SIVmac239M5SpXplasmid_reference_1269-10407	1420	.	t	c	100	PASS	DP=3864;AC=63;AF=0.0163
SIVmac239M5SpXplasmid_reference_1269-10407	1420	.	t	g	100	PASS	DP=3864;AC=46;AF=0.0119
SIVmac239M5SpXplasmid_reference_1269-10407	1421	.	c	a	34	PASS	DP=3922;AC=30;AF=0.0076
SIVmac239M5SpXplasmid_reference_1269-10407	1421	.	c	t	4	q30	DP=3922;AC=17;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	1422	.	c	a	34	PASS	DP=3926;AC=30;AF=0.0076
SIVmac239M5SpXplasmid_reference_1269-10407	1422	.	c	g	4	q30	DP=3926;AC=17;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	1423	.	c	a	54	PASS	DP=3985;AC=36;AF=0.0090
SIVmac239M5SpXplasmid_reference_1269-10407	1423	.	c	g	2	q30	DP=3985;AC=15;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	1424	.	c	a	49	PASS	DP=4041;AC=35;AF=0.0087
SIVmac239M5SpXplasmid_reference_1269-10407	1425	.	c	a	5	q30	DP=4071;AC=18;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	1426	.	a	c	100	PASS	DP=4076;AC=59;AF=0.0145
SIVmac239M5SpXplasmid_reference_1269-10407	1427	.	g	a	1	q30	DP=4068;AC=13;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	1427	.	g	c	4	q30	DP=4068;AC=17;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	1427	.	g	t	8	q30	DP=4068;AC=20;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	1428	.	a	c	31	PASS	DP=4054;AC=30;AF=0.0074
SIVmac239M5SpXplasmid_reference_1269-10407	1428	.	a	g	1	q30	DP=4054;AC=13;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	1428	.	a	t	1	q30	DP=4054;AC=14;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	1429	.	g	a	4	q30	DP=4083;AC=17;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	1429	.	g	t	4	q30	DP=4083;AC=17;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	1430	.	g	t	1	q30	DP=4040;AC=13;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	1431	.	a	c	29	q30	DP=4029;AC=29;AF=0.0072
SIVmac239M5SpXplasmid_reference_1269-10407	1432	.	c	a	96	PASS	DP=4034;AC=46;AF=0.0114
SIVmac239M5SpXplasmid_reference_1269-10407	1432	.	c	g	4	q30	DP=4034;AC=17;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	1433	.	c	a	3	q30	DP=3997;AC=16;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	1434	.	c	a	35	PASS	DP=4006;AC=31;AF=0.0077
SIVmac239M5SpXplasmid_reference_1269-10407	1434	.	c	g	1	q30	DP=4006;AC=13;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	1435	.	a	c	62	PASS	DP=3962;AC=38;AF=0.0096
SIVmac239M5SpXplasmid_reference_1269-10407	1435	.	a	g	2	q30	DP=3962;AC=15;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	1437	.	c	a	20	q30	DP=4068;AC=26;AF=0.0064
SIVmac239M5SpXplasmid_reference_1269-10407	1437	.	c	g	1	q30	DP=4068;AC=13;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	1438	.	t	a	18	q30	DP=4036;AC=25;AF=0.0062
SIVmac239M5SpXplasmid_reference_1269-10407	1438	.	t	c	26	q30	DP=4036;AC=28;AF=0.0069
SIVmac239M5SpXplasmid_reference_1269-10407	1438	.	t	g	78	PASS	DP=4036;AC=42;AF=0.0104
SIVmac239M5SpXplasmid_reference_1269-10407	1439	.	g	t	2	q30	DP=4038;AC=15;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	1440	.	t	a	5	q30	DP=4022;AC=18;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	1440	.	t	g	87	PASS	DP=4022;AC=44;AF=0.0109
SIVmac239M5SpXplasmid_reference_1269-10407	1441	.	g	a	6	q30	DP=4034;AC=19;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	1441	.	g	t	82	PASS	DP=4034;AC=43;AF=0.0107
SIVmac239M5SpXplasmid_reference_1269-10407	1442	.	g	t	6	q30	DP=4035;AC=19;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	1443	.	a	c	19	q30	DP=3983;AC=25;AF=0.0063
SIVmac239M5SpXplasmid_reference_1269-10407	1443	.	a	t	1	q30	DP=3983;AC=14;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	1444	.	t	a	33	PASS	DP=3974;AC=30;AF=0.0075
SIVmac239M5SpXplasmid_reference_1269-10407	1444	.	t	g	89	PASS	DP=3974;AC=44;AF=0.0111
SIVmac239M5SpXplasmid_reference_1269-10407	1445	.	c	a	42	PASS	DP=3844;AC=32;AF=0.0083
SIVmac239M5SpXplasmid_reference_1269-10407	1446	.	t	c	3	q30	DP=3818;AC=15;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	1446	.	t	g	1	q30	DP=3818;AC=13;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	1447	.	g	t	1	q30	DP=3965;AC=14;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	1448	.	c	a	16	q30	DP=3985;AC=24;AF=0.0060
SIVmac239M5SpXplasmid_reference_1269-10407	1449	.	t	c	12	q30	DP=3976;AC=22;AF=0.0055
SIVmac239M5SpXplasmid_reference_1269-10407	1449	.	t	g	27	q30	DP=3976;AC=28;AF=0.0070
SIVmac239M5SpXplasmid_reference_1269-10407	1450	.	a	c	10	q30	DP=3992;AC=21;AF=0.0053
SIVmac239M5SpXplasmid_reference_1269-10407	1452	.	a	c	4	q30	DP=3985;AC=17;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	1453	.	g	a	1	q30	DP=4054;AC=13;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	1453	.	g	t	2	q30	DP=4054;AC=15;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	1454	.	a	c	9	q30	DP=4069;AC=21;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	1456	.	c	a	16	q30	DP=4170;AC=25;AF=0.0060
SIVmac239M5SpXplasmid_reference_1269-10407	1457	.	t	g	100	PASS	DP=4101;AC=52;AF=0.0127
SIVmac239M5SpXplasmid_reference_1269-10407	1458	.	a	c	2	q30	DP=4195;AC=16;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	1459	.	c	a	35	PASS	DP=4193;AC=32;AF=0.0076
SIVmac239M5SpXplasmid_reference_1269-10407	1460	.	a	c	29	q30	DP=4213;AC=30;AF=0.0071
SIVmac239M5SpXplasmid_reference_1269-10407	1461	.	t	a	5	q30	DP=4219;AC=19;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	1461	.	t	g	100	PASS	DP=4219;AC=48;AF=0.0114
SIVmac239M5SpXplasmid_reference_1269-10407	1462	.	g	t	9	q30	DP=4175;AC=21;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	1464	.	a	c	81	PASS	DP=4216;AC=44;AF=0.0104
SIVmac239M5SpXplasmid_reference_1269-10407	1466	.	t	a	12	q30	DP=4243;AC=23;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	1466	.	t	c	4	q30	DP=4243;AC=18;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	1466	.	t	g	100	PASS	DP=4243;AC=49;AF=0.0115
SIVmac239M5SpXplasmid_reference_1269-10407	1467	.	t	a	1	q30	DP=4218;AC=15;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	1467	.	t	g	21	q30	DP=4218;AC=27;AF=0.0064
SIVmac239M5SpXplasmid_reference_1269-10407	1468	.	g	a	8	q30	DP=4235;AC=21;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	1468	.	g	t	7	q30	DP=4235;AC=20;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	1469	.	g	a	14	q30	DP=4236;AC=24;AF=0.0057
SIVmac239M5SpXplasmid_reference_1269-10407	1469	.	g	t	4	q30	DP=4236;AC=18;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	1470	.	g	t	8	q30	DP=4242;AC=21;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	1471	.	c	a	16	q30	DP=4256;AC=25;AF=0.0059
SIVmac239M5SpXplasmid_reference_1269-10407	1471	.	c	g	3	q30	DP=4256;AC=17;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	1472	.	a	c	4	q30	DP=4247;AC=18;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	1475	.	c	a	44	PASS	DP=4267;AC=35;AF=0.0082
SIVmac239M5SpXplasmid_reference_1269-10407	1475	.	c	g	1	q30	DP=4267;AC=14;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	1476	.	a	c	16	q30	DP=4252;AC=25;AF=0.0059
SIVmac239M5SpXplasmid_reference_1269-10407	1478	.	c	a	13	q30	DP=4321;AC=24;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	1478	.	c	g	4	q30	DP=4321;AC=18;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	1479	.	a	c	17	q30	DP=4308;AC=26;AF=0.0060
SIVmac239M5SpXplasmid_reference_1269-10407	1479	.	a	t	1	q30	DP=4308;AC=15;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	1480	.	g	t	1	q30	DP=4308;AC=14;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	1481	.	a	c	13	q30	DP=4288;AC=24;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	1481	.	a	g	1	q30	DP=4288;AC=14;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	1482	.	g	a	1	q30	DP=4359;AC=15;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	1483	.	a	c	4	q30	DP=4343;AC=18;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	1483	.	a	g	1	q30	DP=4343;AC=15;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	1484	.	g	t	2	q30	DP=4362;AC=16;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	1485	.	a	c	1	q30	DP=4366;AC=14;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	1487	.	a	c	6	q30	DP=4345;AC=20;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	1487	.	a	g	6	q30	DP=4345;AC=20;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	1490	.	c	a	9	q30	DP=4355;AC=22;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	1491	.	a	c	5	q30	DP=4310;AC=19;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	1493	.	a	c	6	q30	DP=4328;AC=20;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	1493	.	a	g	1	q30	DP=4328;AC=15;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	1493	.	a	t	2	q30	DP=4328;AC=16;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	1494	.	g	a	2	q30	DP=4362;AC=16;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	1494	.	g	t	1	q30	DP=4362;AC=14;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	1495	.	a	c	3	q30	DP=4358;AC=17;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	1496	.	g	t	3	q30	DP=4371;AC=17;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	1497	.	a	c	1	q30	DP=4396;AC=14;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	1497	.	a	t	1	q30	DP=4396;AC=14;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	1498	.	a	c	6	q30	DP=4404;AC=20;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	1498	.	a	g	6	q30	DP=4404;AC=20;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	1498	.	a	t	1	q30	DP=4404;AC=15;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	1499	.	a	c	1	q30	DP=4412;AC=14;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	1501	.	c	a	6	q30	DP=4427;AC=20;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	1503	.	g	t	4	q30	DP=4406;AC=19;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	1504	.	a	g	6	q30	DP=4393;AC=20;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	1505	.	g	t	12	q30	DP=4394;AC=24;AF=0.0055
SIVmac239M5SpXplasmid_reference_1269-10407	1507	.	g	t	3	q30	DP=4339;AC=17;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	1508	.	a	g	1	q30	DP=4330;AC=14;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	1508	.	a	t	1	q30	DP=4330;AC=15;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	1509	.	a	g	6	q30	DP=4277;AC=20;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	1510	.	g	t	3	q30	DP=4376;AC=18;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	1511	.	c	a	29	q30	DP=4414;AC=31;AF=0.0070
SIVmac239M5SpXplasmid_reference_1269-10407	1511	.	c	g	1	q30	DP=4414;AC=15;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	1512	.	c	a	5	q30	DP=4442;AC=20;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	1513	.	t	a	2	q30	DP=4428;AC=17;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	1513	.	t	g	48	PASS	DP=4428;AC=37;AF=0.0084
SIVmac239M5SpXplasmid_reference_1269-10407	1514	.	t	g	10	q30	DP=4426;AC=23;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	1516	.	c	a	1	q30	DP=4486;AC=15;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	1522	.	g	t	3	q30	DP=4231;AC=17;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	1524	.	t	a	2	q30	DP=4196;AC=16;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	1524	.	t	g	7	q30	DP=4196;AC=20;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	1525	.	g	t	3	q30	DP=4211;AC=17;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	1527	.	c	a	2	q30	DP=4216;AC=16;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	1529	.	g	t	2	q30	DP=4146;AC=16;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	1530	.	a	c	2	q30	DP=4115;AC=15;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	1531	.	g	t	1	q30	DP=4125;AC=14;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	1532	.	g	a	3	q30	DP=4104;AC=16;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	1532	.	g	t	6	q30	DP=4104;AC=19;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	1534	.	t	a	8	q30	DP=4066;AC=20;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	1534	.	t	g	9	q30	DP=4066;AC=21;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	1535	.	t	g	3	q30	DP=4062;AC=16;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	1536	.	t	g	2	q30	DP=4059;AC=15;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	1537	.	g	t	1	q30	DP=4052;AC=13;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	1541	.	c	a	67	PASS	DP=3956;AC=39;AF=0.0099
SIVmac239M5SpXplasmid_reference_1269-10407	1541	.	c	t	1	q30	DP=3956;AC=13;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	1543	.	c	a	35	PASS	DP=4025;AC=31;AF=0.0077
SIVmac239M5SpXplasmid_reference_1269-10407	1544	.	c	a	26	q30	DP=4005;AC=28;AF=0.0070
SIVmac239M5SpXplasmid_reference_1269-10407	1545	.	t	a	2	q30	DP=4005;AC=15;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	1545	.	t	g	18	q30	DP=4005;AC=25;AF=0.0062
SIVmac239M5SpXplasmid_reference_1269-10407	1546	.	c	a	18	q30	DP=4036;AC=25;AF=0.0062
SIVmac239M5SpXplasmid_reference_1269-10407	1549	.	t	g	21	q30	DP=4029;AC=26;AF=0.0065
SIVmac239M5SpXplasmid_reference_1269-10407	1550	.	t	a	6	q30	DP=4034;AC=19;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	1550	.	t	g	26	q30	DP=4034;AC=28;AF=0.0069
SIVmac239M5SpXplasmid_reference_1269-10407	1551	.	c	a	4	q30	DP=4028;AC=17;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	1552	.	t	a	10	q30	DP=3943;AC=21;AF=0.0053
SIVmac239M5SpXplasmid_reference_1269-10407	1552	.	t	g	55	PASS	DP=3943;AC=36;AF=0.0091
SIVmac239M5SpXplasmid_reference_1269-10407	1554	.	t	a	19	q30	DP=3948;AC=25;AF=0.0063
SIVmac239M5SpXplasmid_reference_1269-10407	1554	.	t	g	51	PASS	DP=3948;AC=35;AF=0.0089
SIVmac239M5SpXplasmid_reference_1269-10407	1555	.	c	a	1	q30	DP=4080;AC=14;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	1556	.	t	a	1	q30	DP=4059;AC=14;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	1556	.	t	g	18	q30	DP=4059;AC=25;AF=0.0062
SIVmac239M5SpXplasmid_reference_1269-10407	1557	.	t	a	1	q30	DP=4064;AC=14;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	1557	.	t	g	15	q30	DP=4064;AC=24;AF=0.0059
SIVmac239M5SpXplasmid_reference_1269-10407	1558	.	t	g	3	q30	DP=4049;AC=16;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	1562	.	g	a	1	q30	DP=4015;AC=14;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	1562	.	g	t	8	q30	DP=4015;AC=20;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	1565	.	g	t	3	q30	DP=4029;AC=16;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	1567	.	c	a	3	q30	DP=4103;AC=16;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	1568	.	c	a	40	PASS	DP=4121;AC=33;AF=0.0080
SIVmac239M5SpXplasmid_reference_1269-10407	1571	.	t	g	3	q30	DP=4196;AC=17;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	1574	.	t	g	6	q30	DP=4140;AC=19;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	1575	.	c	a	19	q30	DP=4122;AC=26;AF=0.0063
SIVmac239M5SpXplasmid_reference_1269-10407	1577	.	c	a	4	q30	DP=4057;AC=17;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	1578	.	t	g	1	q30	DP=4018;AC=14;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	1582	.	c	a	3	q30	DP=4076;AC=16;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	1592	.	g	t	2	q30	DP=4090;AC=15;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	1596	.	g	t	2	q30	DP=4099;AC=15;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	1597	.	c	a	9	q30	DP=4081;AC=21;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	1598	.	c	a	2	q30	DP=4182;AC=15;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	1600	.	g	t	2	q30	DP=4247;AC=16;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	1601	.	t	g	1	q30	DP=4242;AC=14;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	1622	.	g	t	10	q30	DP=4025;AC=21;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	1623	.	g	t	2	q30	DP=3921;AC=14;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	1625	.	c	a	6	q30	DP=3846;AC=18;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	1634	.	c	a	6	q30	DP=3818;AC=18;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	1643	.	c	a	1	q30	DP=3741;AC=13;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	1645	.	g	t	2	q30	DP=3749;AC=14;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	1646	.	g	t	3	q30	DP=3805;AC=15;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	1660	.	c	a	5	q30	DP=3331;AC=15;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	1661	.	c	a	13	q30	DP=3271;AC=19;AF=0.0058
SIVmac239M5SpXplasmid_reference_1269-10407	1670	.	c	a	1	q30	DP=2930;AC=9;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	1672	.	c	a	13	q30	DP=2559;AC=16;AF=0.0063
SIVmac239M5SpXplasmid_reference_1269-10407	1673	.	c	a	3	q30	DP=2524;AC=10;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	1676	.	a	c	12	q30	DP=2497;AC=15;AF=0.0060
SIVmac239M5SpXplasmid_reference_1269-10407	1677	.	a	c	4	q30	DP=2490;AC=11;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	1684	.	g	t	1	q30	DP=2350;AC=7;AF=0.0030
SIVmac239M5SpXplasmid_reference_1269-10407	1685	.	g	t	17	q30	DP=2325;AC=16;AF=0.0069
SIVmac239M5SpXplasmid_reference_1269-10407	1686	.	a	c	1	q30	DP=2308;AC=7;AF=0.0030
SIVmac239M5SpXplasmid_reference_1269-10407	1695	.	a	c	1	q30	DP=2024;AC=7;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	1699	.	t	g	1	q30	DP=1607;AC=5;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	1705	.	a	c	1	q30	DP=1439;AC=5;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	1717	.	t	a	1	q30;ac5	DP=887;AC=3;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	1717	.	t	g	9	q30	DP=887;AC=6;AF=0.0068
SIVmac239M5SpXplasmid_reference_1269-10407	1720	.	a	c	1	q30;ac5	DP=934;AC=3;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	1721	.	a	c	1	q30;ac5	DP=953;AC=3;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	1722	.	a	c	3	q30;ac5	DP=953;AC=4;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	1722	.	a	t	1	q30;ac5	DP=953;AC=3;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	1724	.	a	c	1	q30;ac5	DP=976;AC=3;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	1725	.	t	a	1	q30;ac5	DP=993;AC=3;AF=0.0030
SIVmac239M5SpXplasmid_reference_1269-10407	1727	.	t	g	4	q30	DP=1009;AC=5;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	1733	.	t	g	5	q30	DP=1185;AC=6;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	1734	.	a	c	3	q30	DP=1189;AC=5;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	1736	.	a	g	1	q30;ac5	DP=1192;AC=4;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	1736	.	a	t	1	q30;ac5	DP=1192;AC=4;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	1739	.	t	g	4	q30	DP=1333;AC=6;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	1740	.	t	g	3	q30	DP=1337;AC=6;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	1741	.	t	a	8	q30	DP=1337;AC=8;AF=0.0060
SIVmac239M5SpXplasmid_reference_1269-10407	1741	.	t	g	14	q30	DP=1337;AC=10;AF=0.0075
SIVmac239M5SpXplasmid_reference_1269-10407	1743	.	a	g	8	q30	DP=1347;AC=8;AF=0.0059
SIVmac239M5SpXplasmid_reference_1269-10407	1744	.	g	a	1	q30;ac5	DP=1384;AC=4;AF=0.0029
SIVmac239M5SpXplasmid_reference_1269-10407	1744	.	g	t	2	q30	DP=1384;AC=5;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	1745	.	g	a	2	q30	DP=1386;AC=5;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	1745	.	g	t	1	q30;ac5	DP=1386;AC=4;AF=0.0029
SIVmac239M5SpXplasmid_reference_1269-10407	1746	.	c	a	3	q30	DP=1415;AC=6;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	1747	.	a	c	1	q30;ac5	DP=1408;AC=4;AF=0.0028
SIVmac239M5SpXplasmid_reference_1269-10407	1751	.	g	t	1	q30	DP=1573;AC=5;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	1755	.	t	a	1	q30	DP=1668;AC=5;AF=0.0030
SIVmac239M5SpXplasmid_reference_1269-10407	1757	.	a	c	1	q30	DP=1687;AC=5;AF=0.0030
SIVmac239M5SpXplasmid_reference_1269-10407	1759	.	g	t	6	q30	DP=1709;AC=9;AF=0.0053
SIVmac239M5SpXplasmid_reference_1269-10407	1760	.	g	t	14	q30	DP=1739;AC=12;AF=0.0069
SIVmac239M5SpXplasmid_reference_1269-10407	1761	.	g	a	3	q30	DP=1744;AC=7;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	1761	.	g	t	1	q30	DP=1744;AC=5;AF=0.0029
SIVmac239M5SpXplasmid_reference_1269-10407	1762	.	a	g	1	q30	DP=1744;AC=5;AF=0.0029
SIVmac239M5SpXplasmid_reference_1269-10407	1770	.	g	t	2	q30	DP=2332;AC=9;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	1774	.	g	t	1	q30	DP=2468;AC=8;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	1775	.	g	a	1	q30	DP=2496;AC=8;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	1775	.	g	t	30	PASS	DP=2496;AC=21;AF=0.0084
SIVmac239M5SpXplasmid_reference_1269-10407	1776	.	g	t	9	q30	DP=2538;AC=14;AF=0.0055
SIVmac239M5SpXplasmid_reference_1269-10407	1779	.	c	t	1	q30	DP=2556;AC=8;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	1780	.	a	g	2	q30	DP=2548;AC=9;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	1782	.	c	a	7	q30	DP=2585;AC=13;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	1784	.	c	a	3	q30	DP=2597;AC=11;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	1788	.	t	g	1	q30	DP=2739;AC=9;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	1795	.	t	g	3	q30	DP=2751;AC=11;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	1798	.	g	t	2	q30	DP=2760;AC=10;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	1805	.	a	c	2	q30	DP=2813;AC=11;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	1806	.	t	g	10	q30	DP=2831;AC=16;AF=0.0057
SIVmac239M5SpXplasmid_reference_1269-10407	1807	.	t	g	5	q30	DP=2832;AC=13;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	1808	.	t	a	1	q30	DP=2855;AC=9;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	1809	.	g	t	1	q30	DP=2892;AC=9;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	1810	.	c	a	1	q30	DP=2899;AC=10;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	1818	.	t	g	4	q30	DP=3159;AC=14;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	1821	.	g	t	7	q30	DP=3282;AC=16;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	1822	.	g	t	8	q30	DP=3286;AC=17;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	1823	.	g	t	3	q30	DP=3290;AC=13;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	1825	.	a	c	1	q30	DP=3202;AC=10;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	1828	.	t	g	1	q30	DP=3326;AC=11;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	1831	.	c	a	9	q30	DP=3396;AC=18;AF=0.0053
SIVmac239M5SpXplasmid_reference_1269-10407	1836	.	t	g	3	q30	DP=3425;AC=14;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	1837	.	t	g	2	q30	DP=3356;AC=12;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	1838	.	t	g	6	q30	DP=3334;AC=16;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	1839	.	t	a	2	q30	DP=3337;AC=12;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	1839	.	t	g	4	q30	DP=3337;AC=14;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	1840	.	c	a	4	q30	DP=3350;AC=14;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	1841	.	c	a	10	q30	DP=3350;AC=18;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	1841	.	c	t	2	q30	DP=3350;AC=12;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	1842	.	c	a	2	q30	DP=3345;AC=12;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	1855	.	g	t	8	q30	DP=4082;AC=20;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	1856	.	a	g	3	q30	DP=4016;AC=16;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	1858	.	c	a	7	q30	DP=4014;AC=19;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	1860	.	t	g	1	q30	DP=4064;AC=14;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	1862	.	t	g	1	q30	DP=4092;AC=13;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	1866	.	a	c	1	q30	DP=4054;AC=13;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	1868	.	t	g	4	q30	DP=3975;AC=17;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	1869	.	c	a	14	q30	DP=3955;AC=23;AF=0.0058
SIVmac239M5SpXplasmid_reference_1269-10407	1871	.	c	a	10	q30	DP=4023;AC=21;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	1872	.	c	a	4	q30	DP=4026;AC=17;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	1873	.	t	g	4	q30	DP=4028;AC=17;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	1876	.	a	c	1	q30	DP=4043;AC=13;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	1878	.	g	t	2	q30	DP=4074;AC=15;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	1879	.	c	a	28	q30	DP=4076;AC=29;AF=0.0071
SIVmac239M5SpXplasmid_reference_1269-10407	1880	.	c	a	1	q30	DP=4047;AC=14;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	1881	.	a	t	1	q30	DP=4042;AC=14;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	1884	.	a	c	14	q30	DP=4219;AC=24;AF=0.0057
SIVmac239M5SpXplasmid_reference_1269-10407	1888	.	g	t	2	q30	DP=4299;AC=16;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	1889	.	a	c	11	q30	DP=4297;AC=23;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	1890	.	t	a	1	q30	DP=4293;AC=14;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	1891	.	g	t	3	q30	DP=4238;AC=17;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	1892	.	g	t	3	q30	DP=4314;AC=17;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	1894	.	c	a	22	q30	DP=4348;AC=28;AF=0.0064
SIVmac239M5SpXplasmid_reference_1269-10407	1895	.	c	a	24	q30	DP=4350;AC=29;AF=0.0067
SIVmac239M5SpXplasmid_reference_1269-10407	1897	.	a	c	3	q30	DP=4397;AC=18;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	1900	.	t	g	38	PASS	DP=4620;AC=35;AF=0.0076
SIVmac239M5SpXplasmid_reference_1269-10407	1901	.	t	g	1	q30	DP=4564;AC=15;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	1902	.	g	t	6	q30	DP=4567;AC=21;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	1904	.	a	c	1	q30	DP=4613;AC=16;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	1906	.	c	a	4	q30	DP=4682;AC=20;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	1909	.	t	g	2	q30	DP=4704;AC=17;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	1910	.	g	t	7	q30	DP=4910;AC=23;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	1911	.	g	t	1	q30	DP=4974;AC=17;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	1912	.	c	a	11	q30	DP=4980;AC=26;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	1913	.	c	a	6	q30	DP=4988;AC=23;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	1914	.	a	c	3	q30	DP=4972;AC=20;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	1915	.	t	a	2	q30	DP=4977;AC=18;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	1915	.	t	g	2	q30	DP=4977;AC=18;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	1917	.	a	c	1	q30	DP=5031;AC=17;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	1918	.	t	a	11	q30	DP=5034;AC=26;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	1919	.	c	a	11	q30	DP=4992;AC=26;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	1920	.	a	c	1	q30	DP=4977;AC=17;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	1921	.	a	c	1	q30	DP=5051;AC=18;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	1922	.	a	c	4	q30	DP=5063;AC=21;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	1925	.	a	c	2	q30	DP=5316;AC=20;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	1931	.	t	g	5	q30	DP=5576;AC=24;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	1934	.	t	g	2	q30	DP=5533;AC=21;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	1935	.	t	g	1	q30	DP=5520;AC=18;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	1936	.	g	t	1	q30	DP=5596;AC=19;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	1939	.	t	a	14	q30	DP=5775;AC=31;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	1939	.	t	g	34	PASS	DP=5775;AC=40;AF=0.0069
SIVmac239M5SpXplasmid_reference_1269-10407	1940	.	t	g	19	q30	DP=5784;AC=34;AF=0.0059
SIVmac239M5SpXplasmid_reference_1269-10407	1942	.	a	c	1	q30	DP=5907;AC=20;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	1948	.	a	c	1	q30	DP=5758;AC=19;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	1949	.	t	a	7	q30	DP=5793;AC=27;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	1949	.	t	g	9	q30	DP=5793;AC=28;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	1950	.	c	a	6	q30	DP=5808;AC=26;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	1953	.	t	g	3	q30	DP=5693;AC=23;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	1954	.	g	t	1	q30	DP=5688;AC=19;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	1962	.	g	t	2	q30	DP=5693;AC=21;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	1964	.	a	c	3	q30	DP=5638;AC=22;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	1968	.	g	t	2	q30	DP=5661;AC=21;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	1972	.	g	t	6	q30	DP=5544;AC=25;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	1975	.	c	a	14	q30	DP=5724;AC=31;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	1980	.	g	t	1	q30	DP=5923;AC=20;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	1983	.	g	t	1	q30	DP=5875;AC=21;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	1988	.	c	a	6	q30	DP=5601;AC=25;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	1989	.	t	a	34	PASS	DP=5585;AC=39;AF=0.0070
SIVmac239M5SpXplasmid_reference_1269-10407	1989	.	t	c	4	q30	DP=5585;AC=23;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	1989	.	t	g	29	q30	DP=5585;AC=37;AF=0.0066
SIVmac239M5SpXplasmid_reference_1269-10407	1990	.	c	a	33	PASS	DP=5672;AC=39;AF=0.0069
SIVmac239M5SpXplasmid_reference_1269-10407	1991	.	c	a	54	PASS	DP=5686;AC=46;AF=0.0081
SIVmac239M5SpXplasmid_reference_1269-10407	1991	.	c	t	4	q30	DP=5686;AC=24;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	1992	.	c	a	76	PASS	DP=5697;AC=52;AF=0.0091
SIVmac239M5SpXplasmid_reference_1269-10407	1993	.	c	a	64	PASS	DP=5709;AC=49;AF=0.0086
SIVmac239M5SpXplasmid_reference_1269-10407	1994	.	c	a	27	q30	DP=5723;AC=37;AF=0.0065
SIVmac239M5SpXplasmid_reference_1269-10407	1997	.	c	a	18	q30	DP=5957;AC=34;AF=0.0057
SIVmac239M5SpXplasmid_reference_1269-10407	1998	.	c	a	20	q30	DP=5947;AC=35;AF=0.0059
SIVmac239M5SpXplasmid_reference_1269-10407	2002	.	c	a	4	q30	DP=7713;AC=32;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	2003	.	c	a	8	q30	DP=7802;AC=36;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	2012	.	c	a	30	PASS	DP=8695;AC=53;AF=0.0061
SIVmac239M5SpXplasmid_reference_1269-10407	2013	.	c	a	73	PASS	DP=8622;AC=68;AF=0.0079
SIVmac239M5SpXplasmid_reference_1269-10407	2014	.	c	a	85	PASS	DP=8655;AC=72;AF=0.0083
SIVmac239M5SpXplasmid_reference_1269-10407	2015	.	c	a	68	PASS	DP=8706;AC=67;AF=0.0077
SIVmac239M5SpXplasmid_reference_1269-10407	2016	.	c	a	21	q30	DP=8773;AC=49;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	2020	.	t	a	1	q30	DP=8950;AC=30;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	2020	.	t	g	18	q30	DP=8950;AC=48;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	2021	.	t	g	5	q30	DP=8882;AC=37;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	2022	.	t	a	9	q30	DP=8881;AC=41;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	2022	.	t	g	5	q30	DP=8881;AC=38;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	2025	.	t	g	2	q30	DP=9065;AC=34;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	2037	.	g	a	1	q30	DP=9987;AC=35;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	2050	.	t	g	1	q30	DP=11310;AC=40;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	2051	.	g	t	13	q30	DP=11543;AC=56;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	2067	.	t	g	5	q30	DP=12185;AC=51;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	2068	.	t	g	3	q30	DP=12156;AC=47;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	2069	.	t	a	1	q30	DP=12182;AC=42;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	2069	.	t	g	24	q30	DP=12182;AC=66;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	2073	.	g	t	12	q30	DP=12167;AC=58;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	2084	.	g	t	6	q30	DP=13774;AC=58;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	2085	.	g	t	16	q30	DP=13732;AC=68;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	2088	.	c	a	7	q30	DP=13203;AC=57;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	2092	.	c	a	38	PASS	DP=13934;AC=82;AF=0.0059
SIVmac239M5SpXplasmid_reference_1269-10407	2095	.	g	t	2	q30	DP=14032;AC=53;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	2099	.	t	a	1	q30	DP=13998;AC=50;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	2099	.	t	g	1	q30	DP=13998;AC=48;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	2108	.	t	a	9	q30	DP=13866;AC=62;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	2108	.	t	g	2	q30	DP=13866;AC=51;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	2109	.	c	a	8	q30	DP=13934;AC=61;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	2110	.	c	a	61	PASS	DP=13949;AC=92;AF=0.0066
SIVmac239M5SpXplasmid_reference_1269-10407	2116	.	g	t	2	q30	DP=14182;AC=54;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	2123	.	c	a	3	q30	DP=15323;AC=59;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	2127	.	c	a	14	q30	DP=15385;AC=73;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	2128	.	c	a	71	PASS	DP=14920;AC=101;AF=0.0068
SIVmac239M5SpXplasmid_reference_1269-10407	2129	.	c	a	1	q30	DP=15617;AC=57;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	2145	.	a	c	2	q30	DP=15263;AC=58;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	2164	.	c	a	1	q30	DP=17150;AC=62;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	2166	.	g	t	5	q30	DP=19235;AC=79;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	2189	.	c	a	1	q30	DP=17417;AC=60;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	2197	.	c	a	2	q30	DP=17357;AC=66;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	2206	.	g	t	1	q30	DP=16438;AC=59;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	2209	.	t	g	7	q30	DP=16600;AC=71;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	2213	.	g	t	2	q30	DP=16773;AC=64;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	2225	.	c	a	1	q30	DP=17163;AC=60;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	2226	.	c	a	4	q30	DP=16892;AC=67;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	2237	.	c	a	39	PASS	DP=15548;AC=90;AF=0.0058
SIVmac239M5SpXplasmid_reference_1269-10407	2239	.	t	g	10	q30	DP=15472;AC=70;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	2250	.	t	g	1	q30	DP=15332;AC=56;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	2255	.	a	g	2	q30	DP=14058;AC=52;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	2257	.	c	a	5	q30	DP=14030;AC=58;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	2258	.	c	a	11	q30	DP=13876;AC=64;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	2274	.	t	g	1	q30	DP=14062;AC=48;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	2279	.	a	c	1	q30	DP=13726;AC=47;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	2281	.	g	t	6	q30	DP=13431;AC=57;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	2284	.	c	a	2	q30	DP=12220;AC=46;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	2287	.	c	a	5	q30	DP=12271;AC=51;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	2288	.	c	a	16	q30	DP=12247;AC=61;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	2289	.	t	g	43	PASS	DP=12046;AC=75;AF=0.0062
SIVmac239M5SpXplasmid_reference_1269-10407	2290	.	c	a	19	q30	DP=11788;AC=61;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	2292	.	g	t	3	q30	DP=11878;AC=46;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	2293	.	g	t	31	PASS	DP=11945;AC=69;AF=0.0058
SIVmac239M5SpXplasmid_reference_1269-10407	2294	.	g	t	8	q30	DP=11955;AC=53;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	2297	.	g	t	6	q30	DP=11608;AC=50;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	2299	.	a	c	4	q30	DP=11594;AC=47;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	2300	.	a	c	7	q30	DP=11578;AC=51;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	2301	.	g	t	14	q30	DP=11332;AC=56;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	2302	.	g	t	39	PASS	DP=11145;AC=69;AF=0.0062
SIVmac239M5SpXplasmid_reference_1269-10407	2303	.	g	a	2	q30	DP=11162;AC=42;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	2303	.	g	t	18	q30	DP=11162;AC=58;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	2304	.	g	t	2	q30	DP=11172;AC=41;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	2305	.	t	a	1	q30	DP=11124;AC=39;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	2306	.	c	a	23	q30	DP=11140;AC=61;AF=0.0055
SIVmac239M5SpXplasmid_reference_1269-10407	2308	.	c	a	11	q30	DP=11102;AC=52;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	2309	.	c	a	19	q30	DP=11090;AC=58;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	2312	.	c	a	1	q30	DP=11139;AC=39;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	2313	.	c	a	24	q30	DP=11107;AC=61;AF=0.0055
SIVmac239M5SpXplasmid_reference_1269-10407	2315	.	t	g	2	q30	DP=11253;AC=41;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	2319	.	c	a	1	q30	DP=12255;AC=42;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	2320	.	c	a	30	PASS	DP=12253;AC=70;AF=0.0057
SIVmac239M5SpXplasmid_reference_1269-10407	2333	.	g	t	1	q30	DP=12874;AC=45;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	2335	.	c	a	1	q30	DP=12795;AC=44;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	2347	.	c	a	3	q30	DP=13158;AC=51;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	2348	.	c	a	82	PASS	DP=12646;AC=93;AF=0.0074
SIVmac239M5SpXplasmid_reference_1269-10407	2349	.	c	a	18	q30	DP=12721;AC=65;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	2350	.	t	g	54	PASS	DP=12668;AC=83;AF=0.0066
SIVmac239M5SpXplasmid_reference_1269-10407	2354	.	g	t	5	q30	DP=12641;AC=53;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	2355	.	g	t	5	q30	DP=12634;AC=52;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	2357	.	a	c	1	q30	DP=12501;AC=43;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	2358	.	g	t	7	q30	DP=12483;AC=54;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	2359	.	g	t	6	q30	DP=12483;AC=53;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	2364	.	t	g	8	q30	DP=12740;AC=56;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	2365	.	c	a	2	q30	DP=12752;AC=47;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	2366	.	c	a	10	q30	DP=12365;AC=57;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	2369	.	a	c	1	q30	DP=12450;AC=43;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	2373	.	g	t	40	PASS	DP=12329;AC=75;AF=0.0061
SIVmac239M5SpXplasmid_reference_1269-10407	2375	.	c	a	26	q30	DP=12742;AC=70;AF=0.0055
SIVmac239M5SpXplasmid_reference_1269-10407	2376	.	c	a	3	q30	DP=12857;AC=50;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	2382	.	c	a	2	q30	DP=13382;AC=51;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	2383	.	c	a	36	PASS	DP=13387;AC=78;AF=0.0058
SIVmac239M5SpXplasmid_reference_1269-10407	2391	.	g	t	6	q30	DP=14945;AC=63;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	2413	.	g	t	2	q30	DP=15232;AC=58;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	2417	.	g	t	1	q30	DP=15653;AC=56;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	2418	.	g	t	4	q30	DP=15685;AC=63;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	2422	.	g	t	3	q30	DP=15960;AC=63;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	2424	.	c	a	16	q30	DP=16077;AC=78;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	2425	.	c	a	26	q30	DP=16273;AC=86;AF=0.0053
SIVmac239M5SpXplasmid_reference_1269-10407	2427	.	g	t	26	q30	DP=16257;AC=86;AF=0.0053
SIVmac239M5SpXplasmid_reference_1269-10407	2438	.	g	t	31	PASS	DP=16894;AC=92;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	2439	.	g	t	100	PASS	DP=16839;AC=126;AF=0.0075
SIVmac239M5SpXplasmid_reference_1269-10407	2444	.	t	g	3	q30	DP=17278;AC=66;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	2445	.	t	a	1	q30	DP=17298;AC=63;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	2445	.	t	g	7	q30	DP=17298;AC=74;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	2446	.	t	g	51	PASS	DP=17282;AC=104;AF=0.0060
SIVmac239M5SpXplasmid_reference_1269-10407	2452	.	t	g	2	q30	DP=17466;AC=66;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	2453	.	c	a	12	q30	DP=17593;AC=81;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	2457	.	g	t	37	PASS	DP=17759;AC=99;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	2458	.	g	t	14	q30	DP=17813;AC=83;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	2462	.	t	a	24	q30	DP=17906;AC=92;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	2462	.	t	g	12	q30	DP=17906;AC=82;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	2463	.	c	a	58	PASS	DP=18422;AC=113;AF=0.0061
SIVmac239M5SpXplasmid_reference_1269-10407	2464	.	t	g	24	q30	DP=18449;AC=94;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	2466	.	g	t	9	q30	DP=18691;AC=82;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	2476	.	g	t	26	q30	DP=19007;AC=98;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	2477	.	g	t	22	q30	DP=19012;AC=95;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	2479	.	t	a	9	q30	DP=19092;AC=83;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	2480	.	t	g	27	q30	DP=18583;AC=97;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	2481	.	t	a	3	q30	DP=18697;AC=72;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	2481	.	t	g	27	q30	DP=18697;AC=97;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	2482	.	t	g	27	q30	DP=18848;AC=98;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	2484	.	t	g	4	q30	DP=18955;AC=76;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	2486	.	c	a	23	q30	DP=19016;AC=96;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	2487	.	c	a	100	PASS	DP=18746;AC=134;AF=0.0071
SIVmac239M5SpXplasmid_reference_1269-10407	2488	.	c	a	100	PASS	DP=18760;AC=199;AF=0.0106
SIVmac239M5SpXplasmid_reference_1269-10407	2488	.	c	t	5	q30	DP=18760;AC=77;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	2489	.	c	a	68	PASS	DP=18758;AC=119;AF=0.0063
SIVmac239M5SpXplasmid_reference_1269-10407	2494	.	g	t	1	q30	DP=18758;AC=68;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	2496	.	g	t	4	q30	DP=18650;AC=75;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	2500	.	t	a	23	q30	DP=18566;AC=94;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	2500	.	t	g	90	PASS	DP=18566;AC=127;AF=0.0068
SIVmac239M5SpXplasmid_reference_1269-10407	2501	.	t	a	100	PASS	DP=18566;AC=131;AF=0.0071
SIVmac239M5SpXplasmid_reference_1269-10407	2501	.	t	g	100	PASS	DP=18566;AC=141;AF=0.0076
SIVmac239M5SpXplasmid_reference_1269-10407	2502	.	c	a	61	PASS	DP=18560;AC=115;AF=0.0062
SIVmac239M5SpXplasmid_reference_1269-10407	2503	.	c	a	10	q30	DP=18512;AC=82;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	2511	.	t	a	40	PASS	DP=18404;AC=104;AF=0.0057
SIVmac239M5SpXplasmid_reference_1269-10407	2511	.	t	g	32	PASS	DP=18404;AC=99;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	2512	.	c	a	65	PASS	DP=18420;AC=116;AF=0.0063
SIVmac239M5SpXplasmid_reference_1269-10407	2513	.	c	a	100	PASS	DP=18512;AC=145;AF=0.0078
SIVmac239M5SpXplasmid_reference_1269-10407	2514	.	c	a	100	PASS	DP=18502;AC=161;AF=0.0087
SIVmac239M5SpXplasmid_reference_1269-10407	2515	.	c	a	100	PASS	DP=18492;AC=145;AF=0.0078
SIVmac239M5SpXplasmid_reference_1269-10407	2516	.	c	a	100	PASS	DP=18432;AC=130;AF=0.0071
SIVmac239M5SpXplasmid_reference_1269-10407	2518	.	t	a	1	q30	DP=18520;AC=64;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	2518	.	t	g	39	PASS	DP=18520;AC=104;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	2519	.	t	a	8	q30	DP=18408;AC=80;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	2519	.	t	g	100	PASS	DP=18408;AC=147;AF=0.0080
SIVmac239M5SpXplasmid_reference_1269-10407	2520	.	t	a	3	q30	DP=18499;AC=71;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	2520	.	t	g	100	PASS	DP=18499;AC=139;AF=0.0075
SIVmac239M5SpXplasmid_reference_1269-10407	2521	.	c	a	5	q30	DP=18495;AC=75;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	2524	.	t	a	1	q30	DP=18164;AC=66;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	2525	.	g	t	1	q30	DP=18112;AC=66;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	2527	.	a	c	4	q30	DP=17649;AC=70;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	2529	.	g	t	21	q30	DP=17468;AC=88;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	2530	.	g	t	71	PASS	DP=17868;AC=116;AF=0.0065
SIVmac239M5SpXplasmid_reference_1269-10407	2531	.	g	a	15	q30	DP=18018;AC=85;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	2531	.	g	t	35	PASS	DP=18018;AC=99;AF=0.0055
SIVmac239M5SpXplasmid_reference_1269-10407	2539	.	t	g	40	PASS	DP=16973;AC=97;AF=0.0057
SIVmac239M5SpXplasmid_reference_1269-10407	2543	.	g	t	76	PASS	DP=16076;AC=109;AF=0.0068
SIVmac239M5SpXplasmid_reference_1269-10407	2545	.	c	a	51	PASS	DP=15985;AC=98;AF=0.0061
SIVmac239M5SpXplasmid_reference_1269-10407	2546	.	c	a	100	PASS	DP=15956;AC=200;AF=0.0125
SIVmac239M5SpXplasmid_reference_1269-10407	2549	.	c	a	5	q30	DP=15985;AC=65;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	2552	.	a	c	5	q30	DP=16050;AC=66;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	2563	.	c	a	1	q30	DP=15868;AC=55;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	2566	.	a	c	4	q30	DP=15893;AC=64;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	2567	.	a	c	2	q30	DP=16282;AC=61;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	2576	.	t	a	1	q30	DP=15310;AC=55;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	2578	.	c	a	47	PASS	DP=15390;AC=93;AF=0.0060
SIVmac239M5SpXplasmid_reference_1269-10407	2579	.	c	a	100	PASS	DP=15387;AC=122;AF=0.0079
SIVmac239M5SpXplasmid_reference_1269-10407	2581	.	c	a	50	PASS	DP=15306;AC=94;AF=0.0061
SIVmac239M5SpXplasmid_reference_1269-10407	2584	.	a	c	1	q30	DP=15358;AC=56;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	2591	.	c	a	36	PASS	DP=15006;AC=86;AF=0.0057
SIVmac239M5SpXplasmid_reference_1269-10407	2592	.	c	a	43	PASS	DP=14954;AC=89;AF=0.0060
SIVmac239M5SpXplasmid_reference_1269-10407	2597	.	c	a	1	q30	DP=14812;AC=52;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	2617	.	t	a	1	q30	DP=13155;AC=45;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	2623	.	g	t	1	q30	DP=12928;AC=45;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	2634	.	t	g	2	q30	DP=13113;AC=48;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	2636	.	g	t	95	PASS	DP=12203;AC=95;AF=0.0078
SIVmac239M5SpXplasmid_reference_1269-10407	2637	.	g	t	5	q30	DP=12130;AC=51;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	2643	.	t	a	3	q30	DP=11945;AC=47;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	2643	.	t	g	1	q30	DP=11945;AC=42;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	2644	.	c	a	53	PASS	DP=11974;AC=79;AF=0.0066
SIVmac239M5SpXplasmid_reference_1269-10407	2648	.	t	a	1	q30	DP=12226;AC=42;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	2648	.	t	g	27	q30	DP=12226;AC=68;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	2649	.	t	a	5	q30	DP=12236;AC=51;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	2649	.	t	g	23	q30	DP=12236;AC=66;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	2652	.	t	a	33	PASS	DP=11788;AC=69;AF=0.0059
SIVmac239M5SpXplasmid_reference_1269-10407	2652	.	t	g	1	q30	DP=11788;AC=41;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	2653	.	c	a	13	q30	DP=11783;AC=57;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	2654	.	c	a	13	q30	DP=11779;AC=57;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	2656	.	g	a	1	q30	DP=11793;AC=42;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	2656	.	g	t	5	q30	DP=11793;AC=49;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	2658	.	t	g	2	q30	DP=12080;AC=44;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	2667	.	c	a	5	q30	DP=11596;AC=48;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	2673	.	t	a	38	PASS	DP=11871;AC=72;AF=0.0061
SIVmac239M5SpXplasmid_reference_1269-10407	2673	.	t	g	60	PASS	DP=11871;AC=81;AF=0.0068
SIVmac239M5SpXplasmid_reference_1269-10407	2675	.	t	a	6	q30	DP=11898;AC=51;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	2675	.	t	g	36	PASS	DP=11898;AC=71;AF=0.0060
SIVmac239M5SpXplasmid_reference_1269-10407	2676	.	c	a	3	q30	DP=12231;AC=47;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	2679	.	t	g	2	q30	DP=12140;AC=46;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	2687	.	t	a	11	q30	DP=10222;AC=49;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	2687	.	t	g	24	q30	DP=10222;AC=57;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	2688	.	t	g	9	q30	DP=10213;AC=47;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	2699	.	t	a	1	q30	DP=10123;AC=34;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	2702	.	c	a	4	q30	DP=10348;AC=42;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	2703	.	t	a	9	q30	DP=10332;AC=47;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	2703	.	t	g	2	q30	DP=10332;AC=38;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	2704	.	c	a	13	q30	DP=10351;AC=51;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	2705	.	t	a	1	q30	DP=10420;AC=36;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	2708	.	c	a	1	q30	DP=10590;AC=36;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	2710	.	g	t	1	q30	DP=10509;AC=37;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	2712	.	g	a	1	q30	DP=10411;AC=37;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	2712	.	g	t	24	q30	DP=10411;AC=58;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	2718	.	t	a	1	q30	DP=10630;AC=38;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	2718	.	t	g	2	q30	DP=10630;AC=40;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	2719	.	c	a	8	q30	DP=10654;AC=48;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	2723	.	g	t	31	PASS	DP=10710;AC=63;AF=0.0059
SIVmac239M5SpXplasmid_reference_1269-10407	2726	.	c	a	6	q30	DP=10686;AC=46;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	2729	.	a	g	1	q30	DP=10962;AC=38;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	2733	.	g	t	8	q30	DP=10951;AC=49;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	2735	.	c	a	15	q30	DP=10981;AC=55;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	2741	.	c	a	11	q30	DP=11174;AC=53;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	2746	.	t	g	5	q30	DP=11491;AC=48;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	2748	.	t	a	3	q30	DP=11346;AC=44;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	2751	.	g	a	1	q30	DP=11223;AC=40;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	2751	.	g	t	3	q30	DP=11223;AC=44;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	2757	.	t	g	3	q30	DP=11184;AC=43;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	2762	.	t	g	6	q30	DP=11276;AC=48;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	2765	.	t	g	32	PASS	DP=11064;AC=65;AF=0.0059
SIVmac239M5SpXplasmid_reference_1269-10407	2766	.	t	a	11	q30	DP=11068;AC=52;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	2766	.	t	g	77	PASS	DP=11068;AC=83;AF=0.0075
SIVmac239M5SpXplasmid_reference_1269-10407	2768	.	t	a	8	q30	DP=10870;AC=49;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	2768	.	t	g	16	q30	DP=10870;AC=55;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	2772	.	t	a	6	q30	DP=11063;AC=47;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	2772	.	t	g	17	q30	DP=11063;AC=57;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	2773	.	c	a	15	q30	DP=11043;AC=55;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	2775	.	g	t	1	q30	DP=11157;AC=39;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	2785	.	g	t	1	q30	DP=10966;AC=39;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	2788	.	t	a	4	q30	DP=10826;AC=44;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	2791	.	t	g	2	q30	DP=10870;AC=41;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	2793	.	t	g	2	q30	DP=10943;AC=40;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	2796	.	c	a	12	q30	DP=10743;AC=52;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	2797	.	c	a	55	PASS	DP=10639;AC=73;AF=0.0069
SIVmac239M5SpXplasmid_reference_1269-10407	2805	.	c	a	4	q30	DP=9963;AC=41;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	2809	.	c	a	20	q30	DP=9868;AC=53;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	2810	.	c	a	90	PASS	DP=9843;AC=80;AF=0.0081
SIVmac239M5SpXplasmid_reference_1269-10407	2819	.	c	a	16	q30	DP=9506;AC=49;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	2820	.	c	a	100	PASS	DP=9424;AC=82;AF=0.0087
SIVmac239M5SpXplasmid_reference_1269-10407	2835	.	t	a	3	q30	DP=9457;AC=37;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	2835	.	t	g	1	q30	DP=9457;AC=33;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	2836	.	c	a	6	q30	DP=9456;AC=41;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	2838	.	g	t	1	q30	DP=9590;AC=33;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	2844	.	t	a	6	q30	DP=9601;AC=42;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	2844	.	t	g	3	q30	DP=9601;AC=38;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	2845	.	c	a	5	q30	DP=9709;AC=41;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	2849	.	g	t	1	q30	DP=9468;AC=33;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	2851	.	t	a	4	q30	DP=9590;AC=39;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	2852	.	c	a	3	q30	DP=9608;AC=38;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	2861	.	t	a	4	q30	DP=9100;AC=37;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	2861	.	t	g	9	q30	DP=9100;AC=42;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	2863	.	c	a	9	q30	DP=9031;AC=42;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	2865	.	c	a	18	q30	DP=9027;AC=48;AF=0.0053
SIVmac239M5SpXplasmid_reference_1269-10407	2866	.	c	a	14	q30	DP=9028;AC=46;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	2896	.	t	a	2	q30	DP=8239;AC=31;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	2896	.	t	g	2	q30	DP=8239;AC=31;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	2897	.	t	a	1	q30	DP=8229;AC=28;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	2919	.	t	g	2	q30	DP=8394;AC=32;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	2921	.	c	a	24	q30	DP=8677;AC=50;AF=0.0058
SIVmac239M5SpXplasmid_reference_1269-10407	2922	.	c	a	33	PASS	DP=8627;AC=54;AF=0.0063
SIVmac239M5SpXplasmid_reference_1269-10407	2926	.	g	t	1	q30	DP=8161;AC=27;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	2938	.	t	g	1	q30	DP=7464;AC=26;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	2942	.	c	a	14	q30	DP=7551;AC=39;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	2944	.	c	a	11	q30	DP=7257;AC=36;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	2960	.	t	g	15	q30	DP=6868;AC=37;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	2963	.	g	t	2	q30	DP=6978;AC=26;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	2967	.	g	t	12	q30	DP=6934;AC=35;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	2972	.	c	a	2	q30	DP=7088;AC=26;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	2975	.	t	g	26	q30	DP=7264;AC=44;AF=0.0061
SIVmac239M5SpXplasmid_reference_1269-10407	2978	.	t	g	8	q30	DP=7005;AC=33;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	2981	.	t	g	9	q30	DP=7171;AC=34;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	2982	.	c	a	1	q30	DP=7239;AC=24;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	2984	.	g	t	5	q30	DP=7136;AC=30;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	2985	.	g	t	6	q30	DP=7123;AC=31;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	2986	.	g	t	40	PASS	DP=7099;AC=49;AF=0.0069
SIVmac239M5SpXplasmid_reference_1269-10407	2987	.	g	t	6	q30	DP=7092;AC=31;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	2989	.	c	a	3	q30	DP=6966;AC=27;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	2993	.	t	g	1	q30	DP=6757;AC=24;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	2994	.	c	a	15	q30	DP=6763;AC=36;AF=0.0053
SIVmac239M5SpXplasmid_reference_1269-10407	2995	.	c	a	34	PASS	DP=6764;AC=45;AF=0.0067
SIVmac239M5SpXplasmid_reference_1269-10407	2996	.	c	a	60	PASS	DP=6784;AC=54;AF=0.0080
SIVmac239M5SpXplasmid_reference_1269-10407	3001	.	t	g	10	q30	DP=6748;AC=33;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	3002	.	t	g	9	q30	DP=6716;AC=32;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	3003	.	c	a	15	q30	DP=6731;AC=36;AF=0.0053
SIVmac239M5SpXplasmid_reference_1269-10407	3004	.	c	a	43	PASS	DP=6727;AC=48;AF=0.0071
SIVmac239M5SpXplasmid_reference_1269-10407	3008	.	t	g	2	q30	DP=6815;AC=25;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	3010	.	c	a	3	q30	DP=6809;AC=27;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	3011	.	c	a	8	q30	DP=6837;AC=32;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	3014	.	t	g	6	q30	DP=7019;AC=31;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	3018	.	g	t	2	q30	DP=7097;AC=26;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	3020	.	a	c	1	q30	DP=7093;AC=24;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	3029	.	g	t	12	q30	DP=7390;AC=37;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	3030	.	g	t	2	q30	DP=7310;AC=28;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	3031	.	g	t	1	q30	DP=7364;AC=26;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	3034	.	c	a	2	q30	DP=7246;AC=27;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	3038	.	g	t	18	q30	DP=7389;AC=41;AF=0.0055
SIVmac239M5SpXplasmid_reference_1269-10407	3041	.	g	t	39	PASS	DP=7368;AC=50;AF=0.0068
SIVmac239M5SpXplasmid_reference_1269-10407	3049	.	t	g	1	q30	DP=7327;AC=24;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	3051	.	t	a	2	q30	DP=7314;AC=28;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	3051	.	t	g	14	q30	DP=7314;AC=38;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	3053	.	g	t	42	PASS	DP=7314;AC=51;AF=0.0070
SIVmac239M5SpXplasmid_reference_1269-10407	3057	.	g	t	4	q30	DP=7219;AC=30;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	3062	.	c	a	3	q30	DP=7512;AC=30;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	3065	.	g	t	2	q30	DP=7622;AC=29;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	3070	.	c	a	39	PASS	DP=7596;AC=51;AF=0.0067
SIVmac239M5SpXplasmid_reference_1269-10407	3071	.	c	a	11	q30	DP=7550;AC=37;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	3072	.	g	t	2	q30	DP=7549;AC=29;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	3073	.	g	t	3	q30	DP=7640;AC=30;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	3074	.	a	c	1	q30	DP=7611;AC=26;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	3074	.	a	t	1	q30	DP=7611;AC=26;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	3075	.	a	c	2	q30	DP=7618;AC=28;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	3077	.	g	t	36	PASS	DP=7606;AC=50;AF=0.0066
SIVmac239M5SpXplasmid_reference_1269-10407	3078	.	g	t	5	q30	DP=7701;AC=33;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	3079	.	g	t	3	q30	DP=7764;AC=31;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	3082	.	t	g	3	q30	DP=7738;AC=30;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	3083	.	t	g	3	q30	DP=7747;AC=31;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	3087	.	c	a	7	q30	DP=7935;AC=36;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	3089	.	c	a	6	q30	DP=7969;AC=35;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	3094	.	c	a	4	q30	DP=8037;AC=33;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	3095	.	c	a	55	PASS	DP=7979;AC=59;AF=0.0074
SIVmac239M5SpXplasmid_reference_1269-10407	3097	.	c	a	6	q30	DP=8111;AC=35;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	3098	.	c	a	69	PASS	DP=8090;AC=64;AF=0.0079
SIVmac239M5SpXplasmid_reference_1269-10407	3100	.	c	a	8	q30	DP=8191;AC=38;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	3109	.	t	a	1	q30	DP=8314;AC=28;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	3109	.	t	g	1	q30	DP=8314;AC=30;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	3115	.	t	g	7	q30	DP=8303;AC=37;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	3116	.	t	a	1	q30	DP=8293;AC=29;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	3116	.	t	g	2	q30	DP=8293;AC=31;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	3117	.	c	a	12	q30	DP=8261;AC=41;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	3120	.	t	g	2	q30	DP=8401;AC=31;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	3121	.	c	a	13	q30	DP=8325;AC=42;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	3122	.	t	g	3	q30	DP=8319;AC=33;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	3126	.	g	t	1	q30	DP=8561;AC=30;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	3129	.	g	t	3	q30	DP=8474;AC=33;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	3130	.	g	t	7	q30	DP=8511;AC=38;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	3132	.	c	a	83	PASS	DP=9636;AC=77;AF=0.0080
SIVmac239M5SpXplasmid_reference_1269-10407	3133	.	c	a	100	PASS	DP=9582;AC=98;AF=0.0102
SIVmac239M5SpXplasmid_reference_1269-10407	3134	.	c	a	70	PASS	DP=9881;AC=74;AF=0.0075
SIVmac239M5SpXplasmid_reference_1269-10407	3137	.	t	g	6	q30	DP=10040;AC=43;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	3141	.	g	t	4	q30	DP=9313;AC=38;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	3142	.	g	a	7	q30	DP=9269;AC=41;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	3142	.	g	t	17	q30	DP=9269;AC=49;AF=0.0053
SIVmac239M5SpXplasmid_reference_1269-10407	3143	.	g	t	5	q30	DP=9218;AC=39;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	3152	.	c	a	29	q30	DP=9446;AC=56;AF=0.0059
SIVmac239M5SpXplasmid_reference_1269-10407	3153	.	c	a	7	q30	DP=10355;AC=46;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	3154	.	t	g	5	q30	DP=10371;AC=43;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	3156	.	t	a	7	q30	DP=10714;AC=47;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	3156	.	t	g	18	q30	DP=10714;AC=56;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	3157	.	t	g	1	q30	DP=10717;AC=38;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	3166	.	g	t	16	q30	DP=11245;AC=57;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	3167	.	g	t	2	q30	DP=11193;AC=41;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	3169	.	t	a	5	q30	DP=11255;AC=47;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	3170	.	c	a	13	q30	DP=11101;AC=54;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	3184	.	t	a	2	q30	DP=12290;AC=47;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	3184	.	t	g	18	q30	DP=12290;AC=63;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	3185	.	c	a	4	q30	DP=12311;AC=49;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	3193	.	g	t	3	q30	DP=12489;AC=48;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	3194	.	g	t	6	q30	DP=12536;AC=53;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	3205	.	t	g	1	q30	DP=13745;AC=48;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	3209	.	t	g	2	q30	DP=14416;AC=54;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	3218	.	g	t	3	q30	DP=13174;AC=51;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	3219	.	g	t	35	PASS	DP=13215;AC=77;AF=0.0058
SIVmac239M5SpXplasmid_reference_1269-10407	3220	.	g	a	4	q30	DP=13319;AC=54;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	3220	.	g	t	4	q30	DP=13319;AC=54;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	3273	.	g	t	1	q30	DP=11542;AC=40;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	3283	.	c	a	1	q30	DP=10823;AC=39;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	3285	.	c	a	9	q30	DP=10781;AC=49;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	3304	.	g	t	83	PASS	DP=8623;AC=71;AF=0.0082
SIVmac239M5SpXplasmid_reference_1269-10407	3305	.	g	t	3	q30	DP=8620;AC=34;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	3307	.	c	a	1	q30	DP=8434;AC=29;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	3308	.	c	a	78	PASS	DP=8175;AC=67;AF=0.0082
SIVmac239M5SpXplasmid_reference_1269-10407	3341	.	t	a	1	q30	DP=3245;AC=11;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	3358	.	g	a	1	q30	DP=2242;AC=7;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	3363	.	c	a	2	q30	DP=2159;AC=8;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	3364	.	c	a	23	q30	DP=2155;AC=17;AF=0.0079
SIVmac239M5SpXplasmid_reference_1269-10407	3365	.	c	a	30	PASS	DP=2179;AC=19;AF=0.0087
SIVmac239M5SpXplasmid_reference_1269-10407	3368	.	c	a	1	q30	DP=2204;AC=7;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	3373	.	t	a	2	q30	DP=2051;AC=8;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	3374	.	c	a	1	q30	DP=2003;AC=6;AF=0.0030
SIVmac239M5SpXplasmid_reference_1269-10407	3378	.	g	a	1	q30	DP=1981;AC=6;AF=0.0030
SIVmac239M5SpXplasmid_reference_1269-10407	3379	.	a	g	1	q30	DP=1885;AC=6;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	3380	.	g	t	3	q30	DP=1884;AC=8;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	3383	.	g	t	2	q30	DP=1833;AC=7;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	3384	.	g	t	5	q30	DP=1836;AC=9;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	3385	.	c	a	7	q30	DP=1830;AC=10;AF=0.0055
SIVmac239M5SpXplasmid_reference_1269-10407	3389	.	t	a	1	q30	DP=1729;AC=6;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	3390	.	t	g	3	q30	DP=1725;AC=7;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	3393	.	t	g	2	q30	DP=1626;AC=6;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	3398	.	t	g	7	q30	DP=1613;AC=9;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	3401	.	t	g	2	q30	DP=1652;AC=6;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	3413	.	t	a	7	q30	DP=1680;AC=9;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	3413	.	t	g	7	q30	DP=1680;AC=9;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	3414	.	t	g	2	q30	DP=1682;AC=6;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	3421	.	t	g	17	q30	DP=1746;AC=13;AF=0.0074
SIVmac239M5SpXplasmid_reference_1269-10407	3422	.	c	a	20	q30	DP=1749;AC=14;AF=0.0080
SIVmac239M5SpXplasmid_reference_1269-10407	3428	.	t	g	7	q30	DP=2081;AC=11;AF=0.0053
SIVmac239M5SpXplasmid_reference_1269-10407	3429	.	t	g	14	q30	DP=2092;AC=14;AF=0.0067
SIVmac239M5SpXplasmid_reference_1269-10407	3430	.	t	a	2	q30	DP=2101;AC=8;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	3430	.	t	g	5	q30	DP=2101;AC=10;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	3440	.	g	t	14	q30	DP=2532;AC=16;AF=0.0063
SIVmac239M5SpXplasmid_reference_1269-10407	3441	.	g	a	5	q30	DP=2624;AC=12;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	3441	.	g	t	1	q30	DP=2624;AC=9;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	3446	.	c	a	1	q30	DP=2816;AC=9;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	3451	.	c	a	11	q30	DP=3015;AC=17;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	3453	.	c	a	4	q30	DP=3097;AC=13;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	3457	.	g	t	9	q30	DP=3632;AC=19;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	3463	.	g	t	2	q30	DP=4006;AC=15;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	3466	.	g	a	2	q30	DP=3902;AC=14;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	3467	.	g	t	2	q30	DP=3870;AC=15;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	3472	.	c	a	3	q30	DP=3994;AC=16;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	3479	.	t	g	7	q30	DP=4238;AC=20;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	3481	.	g	t	1	q30	DP=4233;AC=14;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	3484	.	c	a	13	q30	DP=4274;AC=24;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	3486	.	c	a	3	q30	DP=4340;AC=17;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	3487	.	c	a	6	q30	DP=4344;AC=20;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	3496	.	c	a	1	q30	DP=4488;AC=16;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	3499	.	g	t	23	q30	DP=4464;AC=29;AF=0.0065
SIVmac239M5SpXplasmid_reference_1269-10407	3500	.	g	t	7	q30	DP=4599;AC=22;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	3528	.	g	t	4	q30	DP=4494;AC=19;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	3532	.	g	t	3	q30	DP=4463;AC=18;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	3535	.	c	a	2	q30	DP=4451;AC=16;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	3536	.	c	a	3	q30	DP=4388;AC=17;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	3580	.	t	g	1	q30	DP=2994;AC=10;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	3581	.	t	a	1	q30	DP=2990;AC=10;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	3583	.	g	t	2	q30	DP=3080;AC=11;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	3586	.	t	a	2	q30	DP=3081;AC=11;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	3586	.	t	g	2	q30	DP=3081;AC=11;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	3587	.	t	g	2	q30	DP=3082;AC=12;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	3592	.	t	g	6	q30	DP=3175;AC=15;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	3593	.	t	g	16	q30	DP=3188;AC=20;AF=0.0063
SIVmac239M5SpXplasmid_reference_1269-10407	3596	.	g	t	1	q30	DP=3280;AC=11;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	3599	.	t	g	3	q30	DP=3273;AC=13;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	3601	.	c	a	4	q30	DP=3942;AC=17;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	3602	.	c	a	5	q30	DP=3999;AC=18;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	3608	.	t	g	13	q30	DP=4334;AC=24;AF=0.0055
SIVmac239M5SpXplasmid_reference_1269-10407	3612	.	g	a	1	q30	DP=4272;AC=14;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	3612	.	g	t	67	PASS	DP=4272;AC=41;AF=0.0096
SIVmac239M5SpXplasmid_reference_1269-10407	3614	.	c	a	2	q30	DP=4271;AC=16;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	3615	.	c	a	31	PASS	DP=4298;AC=31;AF=0.0072
SIVmac239M5SpXplasmid_reference_1269-10407	3630	.	c	a	1	q30	DP=5499;AC=18;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	3632	.	c	a	12	q30	DP=5576;AC=29;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	3633	.	c	a	2	q30	DP=5570;AC=20;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	3643	.	t	g	6	q30	DP=5752;AC=26;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	3645	.	t	g	1	q30	DP=5682;AC=20;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	3648	.	t	g	3	q30	DP=5764;AC=23;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	3649	.	c	a	1	q30	DP=5890;AC=21;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	3655	.	g	t	1	q30	DP=6188;AC=22;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	3656	.	g	t	4	q30	DP=6188;AC=26;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	3657	.	a	g	8	q30	DP=6143;AC=29;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	3662	.	c	a	1	q30	DP=6873;AC=24;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	3663	.	t	g	5	q30	DP=6884;AC=29;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	3665	.	t	g	5	q30	DP=7322;AC=31;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	3670	.	g	t	100	PASS	DP=7093;AC=79;AF=0.0111
SIVmac239M5SpXplasmid_reference_1269-10407	3671	.	g	a	3	q30	DP=7084;AC=28;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	3671	.	g	t	28	q30	DP=7084;AC=44;AF=0.0062
SIVmac239M5SpXplasmid_reference_1269-10407	3672	.	g	t	1	q30	DP=7088;AC=24;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	3677	.	c	a	2	q30	DP=7041;AC=27;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	3681	.	t	g	30	PASS	DP=7300;AC=46;AF=0.0063
SIVmac239M5SpXplasmid_reference_1269-10407	3682	.	t	g	32	PASS	DP=7317;AC=47;AF=0.0064
SIVmac239M5SpXplasmid_reference_1269-10407	3683	.	c	a	4	q30	DP=7334;AC=30;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	3685	.	g	t	1	q30	DP=7399;AC=25;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	3687	.	t	a	5	q30	DP=7680;AC=33;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	3687	.	t	g	2	q30	DP=7680;AC=29;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	3688	.	c	a	2	q30	DP=7708;AC=29;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	3689	.	t	g	1	q30	DP=7687;AC=27;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	3691	.	g	t	13	q30	DP=7705;AC=39;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	3692	.	g	t	69	PASS	DP=7742;AC=62;AF=0.0080
SIVmac239M5SpXplasmid_reference_1269-10407	3693	.	g	t	12	q30	DP=7772;AC=39;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	3695	.	c	a	10	q30	DP=7729;AC=37;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	3696	.	t	g	1	q30	DP=7668;AC=27;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	3698	.	g	t	3	q30	DP=7831;AC=31;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	3699	.	g	t	1	q30	DP=7900;AC=28;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	3704	.	t	g	1	q30	DP=7980;AC=28;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	3705	.	g	t	24	q30	DP=8301;AC=48;AF=0.0058
SIVmac239M5SpXplasmid_reference_1269-10407	3713	.	c	a	29	q30	DP=9067;AC=54;AF=0.0060
SIVmac239M5SpXplasmid_reference_1269-10407	3714	.	c	a	46	PASS	DP=8981;AC=61;AF=0.0068
SIVmac239M5SpXplasmid_reference_1269-10407	3715	.	c	a	61	PASS	DP=9313;AC=68;AF=0.0073
SIVmac239M5SpXplasmid_reference_1269-10407	3718	.	c	a	1	q30	DP=9464;AC=34;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	3723	.	g	t	11	q30	DP=9403;AC=45;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	3724	.	g	t	38	PASS	DP=9250;AC=59;AF=0.0064
SIVmac239M5SpXplasmid_reference_1269-10407	3725	.	g	t	4	q30	DP=9321;AC=38;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	3731	.	t	g	1	q30	DP=9514;AC=33;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	3734	.	t	g	6	q30	DP=9498;AC=41;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	3748	.	c	a	1	q30	DP=10847;AC=38;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	3760	.	g	t	14	q30	DP=10205;AC=51;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	3763	.	t	g	3	q30	DP=10128;AC=40;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	3765	.	c	a	1	q30	DP=10283;AC=35;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	3777	.	g	t	3	q30	DP=10086;AC=39;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	3782	.	t	a	2	q30	DP=10058;AC=37;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	3783	.	t	g	3	q30	DP=10045;AC=40;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	3784	.	c	a	4	q30	DP=10071;AC=41;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	3785	.	c	a	46	PASS	DP=9972;AC=66;AF=0.0066
SIVmac239M5SpXplasmid_reference_1269-10407	3796	.	g	t	3	q30	DP=9836;AC=39;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	3800	.	g	t	1	q30	DP=9586;AC=33;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	3804	.	g	t	3	q30	DP=9415;AC=37;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	3809	.	c	a	8	q30	DP=9202;AC=42;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	3814	.	t	g	3	q30	DP=9112;AC=35;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	3817	.	c	a	4	q30	DP=8669;AC=36;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	3826	.	t	g	14	q30	DP=8141;AC=42;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	3828	.	g	t	12	q30	DP=8076;AC=40;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	3834	.	c	a	2	q30	DP=8045;AC=30;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	3839	.	g	t	50	PASS	DP=7938;AC=57;AF=0.0072
SIVmac239M5SpXplasmid_reference_1269-10407	3841	.	c	a	18	q30	DP=8140;AC=44;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	3842	.	c	a	24	q30	DP=8222;AC=48;AF=0.0058
SIVmac239M5SpXplasmid_reference_1269-10407	3843	.	t	g	1	q30	DP=8171;AC=27;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	3848	.	c	a	1	q30	DP=8368;AC=29;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	3850	.	c	a	5	q30	DP=7897;AC=34;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	3852	.	t	a	9	q30	DP=7990;AC=38;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	3852	.	t	c	17	q30	DP=7990;AC=43;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	3852	.	t	g	7	q30	DP=7990;AC=36;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	3853	.	c	a	33	PASS	DP=7849;AC=50;AF=0.0064
SIVmac239M5SpXplasmid_reference_1269-10407	3856	.	c	a	16	q30	DP=7695;AC=41;AF=0.0053
SIVmac239M5SpXplasmid_reference_1269-10407	3858	.	c	a	9	q30	DP=7674;AC=36;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	3864	.	t	g	12	q30	DP=6673;AC=34;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	3867	.	t	g	2	q30	DP=6515;AC=24;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	3868	.	g	t	10	q30	DP=6492;AC=32;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	3870	.	t	g	4	q30	DP=5847;AC=24;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	3871	.	g	t	10	q30	DP=5823;AC=29;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	3872	.	c	a	12	q30	DP=5804;AC=30;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	3877	.	t	g	9	q30	DP=5670;AC=28;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	3878	.	t	g	5	q30	DP=5541;AC=24;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	3882	.	t	g	11	q30	DP=5448;AC=28;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	3883	.	t	g	11	q30	DP=5443;AC=28;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	3886	.	c	a	2	q30	DP=5395;AC=20;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	3889	.	g	t	2	q30	DP=5402;AC=20;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	3890	.	a	c	1	q30	DP=5453;AC=18;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	3893	.	t	g	30	PASS	DP=5516;AC=37;AF=0.0067
SIVmac239M5SpXplasmid_reference_1269-10407	3898	.	a	c	1	q30	DP=5545;AC=18;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	3900	.	g	t	38	PASS	DP=5335;AC=39;AF=0.0073
SIVmac239M5SpXplasmid_reference_1269-10407	3902	.	t	a	1	q30	DP=5284;AC=18;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	3902	.	t	g	5	q30	DP=5284;AC=23;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	3905	.	c	a	15	q30	DP=5202;AC=29;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	3907	.	t	g	3	q30	DP=5152;AC=20;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	3908	.	g	t	6	q30	DP=5103;AC=23;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	3910	.	t	c	1	q30	DP=4925;AC=16;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	3911	.	g	t	45	PASS	DP=4953;AC=39;AF=0.0079
SIVmac239M5SpXplasmid_reference_1269-10407	3912	.	g	t	1	q30	DP=4987;AC=16;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	3914	.	c	a	41	PASS	DP=4983;AC=38;AF=0.0076
SIVmac239M5SpXplasmid_reference_1269-10407	3916	.	g	t	16	q30	DP=5019;AC=29;AF=0.0058
SIVmac239M5SpXplasmid_reference_1269-10407	3917	.	g	t	8	q30	DP=5141;AC=25;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	3920	.	t	g	7	q30	DP=5102;AC=24;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	3922	.	g	t	1	q30	DP=5073;AC=18;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	3925	.	c	a	10	q30	DP=4940;AC=25;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	3927	.	c	a	14	q30	DP=4845;AC=27;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	3929	.	c	a	30	PASS	DP=5108;AC=35;AF=0.0069
SIVmac239M5SpXplasmid_reference_1269-10407	3930	.	c	a	18	q30	DP=5114;AC=30;AF=0.0059
SIVmac239M5SpXplasmid_reference_1269-10407	3931	.	t	g	14	q30	DP=5067;AC=28;AF=0.0055
SIVmac239M5SpXplasmid_reference_1269-10407	3932	.	t	g	2	q30	DP=5194;AC=20;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	3934	.	g	a	1	q30	DP=5251;AC=18;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	3934	.	g	t	56	PASS	DP=5251;AC=44;AF=0.0084
SIVmac239M5SpXplasmid_reference_1269-10407	3935	.	g	a	3	q30	DP=5295;AC=21;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	3935	.	g	t	45	PASS	DP=5295;AC=41;AF=0.0077
SIVmac239M5SpXplasmid_reference_1269-10407	3936	.	g	a	1	q30	DP=5316;AC=18;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	3936	.	g	t	22	q30	DP=5316;AC=33;AF=0.0062
SIVmac239M5SpXplasmid_reference_1269-10407	3940	.	c	a	10	q30	DP=5829;AC=29;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	3941	.	c	a	3	q30	DP=5789;AC=23;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	3943	.	t	g	2	q30	DP=6017;AC=23;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	3945	.	c	a	1	q30	DP=6155;AC=21;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	3948	.	t	a	42	PASS	DP=6016;AC=44;AF=0.0073
SIVmac239M5SpXplasmid_reference_1269-10407	3948	.	t	g	65	PASS	DP=6016;AC=51;AF=0.0085
SIVmac239M5SpXplasmid_reference_1269-10407	3949	.	c	a	44	PASS	DP=6103;AC=45;AF=0.0074
SIVmac239M5SpXplasmid_reference_1269-10407	3950	.	c	a	11	q30	DP=6123;AC=31;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	3952	.	c	a	17	q30	DP=6065;AC=34;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	3954	.	g	t	2	q30	DP=6300;AC=23;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	3955	.	a	c	1	q30	DP=6293;AC=22;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	3957	.	t	a	2	q30	DP=6655;AC=24;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	3957	.	t	g	21	q30	DP=6655;AC=39;AF=0.0059
SIVmac239M5SpXplasmid_reference_1269-10407	3958	.	c	a	7	q30	DP=6632;AC=30;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	3960	.	g	t	3	q30	DP=6730;AC=27;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	3961	.	g	t	10	q30	DP=6763;AC=33;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	3962	.	g	t	1	q30	DP=6894;AC=23;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	3965	.	t	g	4	q30	DP=6922;AC=29;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	3969	.	g	t	39	PASS	DP=6992;AC=48;AF=0.0069
SIVmac239M5SpXplasmid_reference_1269-10407	3974	.	c	a	9	q30	DP=7075;AC=34;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	3981	.	t	a	1	q30	DP=7308;AC=25;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	3981	.	t	g	2	q30	DP=7308;AC=28;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	3984	.	c	a	30	PASS	DP=7302;AC=46;AF=0.0063
SIVmac239M5SpXplasmid_reference_1269-10407	3985	.	c	a	21	q30	DP=7290;AC=42;AF=0.0058
SIVmac239M5SpXplasmid_reference_1269-10407	3987	.	c	a	70	PASS	DP=7343;AC=60;AF=0.0082
SIVmac239M5SpXplasmid_reference_1269-10407	3988	.	c	a	40	PASS	DP=7328;AC=50;AF=0.0068
SIVmac239M5SpXplasmid_reference_1269-10407	3989	.	t	a	2	q30	DP=7289;AC=28;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	3996	.	t	g	3	q30	DP=7377;AC=29;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	3997	.	c	a	4	q30	DP=7458;AC=31;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	4005	.	t	a	6	q30	DP=7869;AC=34;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	4005	.	t	g	1	q30	DP=7869;AC=26;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	4007	.	g	t	1	q30	DP=8035;AC=27;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	4010	.	t	a	22	q30	DP=8099;AC=46;AF=0.0057
SIVmac239M5SpXplasmid_reference_1269-10407	4010	.	t	g	22	q30	DP=8099;AC=46;AF=0.0057
SIVmac239M5SpXplasmid_reference_1269-10407	4011	.	c	a	1	q30	DP=8053;AC=29;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	4013	.	g	t	1	q30	DP=7969;AC=27;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	4014	.	g	t	3	q30	DP=7980;AC=32;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	4026	.	t	a	1	q30	DP=8109;AC=27;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	4026	.	t	g	2	q30	DP=8109;AC=31;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	4027	.	t	a	9	q30	DP=8099;AC=38;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	4027	.	t	g	12	q30	DP=8099;AC=40;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	4028	.	c	a	8	q30	DP=8122;AC=37;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	4037	.	c	a	8	q30	DP=8555;AC=39;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	4038	.	c	a	9	q30	DP=8550;AC=40;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	4040	.	t	g	5	q30	DP=8356;AC=35;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	4045	.	t	g	1	q30	DP=8940;AC=32;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	4046	.	t	g	3	q30	DP=8589;AC=34;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	4050	.	g	t	2	q30	DP=8567;AC=31;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	4056	.	t	a	1	q30	DP=7761;AC=28;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	4057	.	c	a	1	q30	DP=7776;AC=28;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	4062	.	c	a	1	q30	DP=7576;AC=26;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	4068	.	t	a	3	q30	DP=7516;AC=30;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	4068	.	t	g	1	q30	DP=7516;AC=25;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	4079	.	g	t	23	q30	DP=7549;AC=44;AF=0.0058
SIVmac239M5SpXplasmid_reference_1269-10407	4080	.	g	t	15	q30	DP=7584;AC=40;AF=0.0053
SIVmac239M5SpXplasmid_reference_1269-10407	4090	.	g	t	3	q30	DP=7715;AC=31;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	4091	.	g	a	2	q30	DP=7623;AC=29;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	4091	.	g	t	41	PASS	DP=7623;AC=52;AF=0.0068
SIVmac239M5SpXplasmid_reference_1269-10407	4092	.	g	a	9	q30	DP=7671;AC=36;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	4092	.	g	t	5	q30	DP=7671;AC=33;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	4100	.	c	a	1	q30	DP=7011;AC=23;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	4102	.	c	a	21	q30	DP=6651;AC=39;AF=0.0059
SIVmac239M5SpXplasmid_reference_1269-10407	4103	.	c	a	7	q30	DP=6623;AC=30;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	4114	.	t	a	1	q30	DP=6378;AC=21;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	4114	.	t	g	1	q30	DP=6378;AC=21;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	4124	.	t	a	1	q30	DP=6006;AC=20;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	4127	.	t	a	14	q30	DP=6164;AC=33;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	4128	.	c	a	7	q30	DP=6168;AC=28;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	4138	.	c	a	1	q30	DP=5697;AC=20;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	4141	.	g	t	1	q30	DP=4372;AC=14;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	4142	.	a	g	8	q30	DP=4241;AC=21;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	4143	.	g	t	1	q30	DP=4265;AC=15;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	4145	.	t	g	10	q30	DP=3815;AC=20;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	4147	.	c	a	4	q30	DP=3823;AC=16;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	4150	.	t	a	10	q30	DP=3534;AC=19;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	4150	.	t	g	8	q30	DP=3534;AC=18;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	4151	.	t	a	1	q30	DP=3463;AC=12;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	4151	.	t	g	7	q30	DP=3463;AC=17;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	4152	.	t	a	11	q30	DP=3440;AC=19;AF=0.0055
SIVmac239M5SpXplasmid_reference_1269-10407	4152	.	t	g	6	q30	DP=3440;AC=16;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	4153	.	c	a	8	q30	DP=3365;AC=17;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	4159	.	t	a	49	PASS	DP=3180;AC=30;AF=0.0094
SIVmac239M5SpXplasmid_reference_1269-10407	4159	.	t	g	19	q30	DP=3180;AC=21;AF=0.0066
SIVmac239M5SpXplasmid_reference_1269-10407	4160	.	c	a	2	q30	DP=3186;AC=12;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	4167	.	c	a	1	q30	DP=3196;AC=10;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	4168	.	t	a	6	q30	DP=3171;AC=15;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	4168	.	t	g	38	PASS	DP=3171;AC=27;AF=0.0085
SIVmac239M5SpXplasmid_reference_1269-10407	4169	.	c	a	2	q30	DP=3179;AC=12;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	4174	.	t	a	7	q30	DP=3208;AC=16;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	4174	.	t	g	37	PASS	DP=3208;AC=27;AF=0.0084
SIVmac239M5SpXplasmid_reference_1269-10407	4175	.	t	a	4	q30	DP=3205;AC=14;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	4175	.	t	g	49	PASS	DP=3205;AC=30;AF=0.0094
SIVmac239M5SpXplasmid_reference_1269-10407	4176	.	t	g	11	q30	DP=3197;AC=18;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	4179	.	a	g	2	q30	DP=3219;AC=12;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	4180	.	a	g	1	q30	DP=3226;AC=10;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	4182	.	t	a	1	q30	DP=3238;AC=11;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	4182	.	t	g	100	PASS	DP=3238;AC=49;AF=0.0151
SIVmac239M5SpXplasmid_reference_1269-10407	4183	.	t	a	1	q30	DP=3241;AC=10;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	4183	.	t	g	89	PASS	DP=3241;AC=39;AF=0.0120
SIVmac239M5SpXplasmid_reference_1269-10407	4184	.	t	a	1	q30	DP=3242;AC=10;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	4184	.	t	g	44	PASS	DP=3242;AC=29;AF=0.0089
SIVmac239M5SpXplasmid_reference_1269-10407	4185	.	t	a	3	q30	DP=3244;AC=13;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	4185	.	t	g	9	q30	DP=3244;AC=17;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	4186	.	c	a	1	q30	DP=3246;AC=10;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	4187	.	g	a	1	q30	DP=3239;AC=11;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	4189	.	g	t	1	q30	DP=3474;AC=11;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	4190	.	t	g	46	PASS	DP=3471;AC=31;AF=0.0089
SIVmac239M5SpXplasmid_reference_1269-10407	4191	.	c	a	1	q30	DP=3692;AC=13;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	4192	.	t	g	57	PASS	DP=3709;AC=35;AF=0.0094
SIVmac239M5SpXplasmid_reference_1269-10407	4194	.	t	a	15	q30	DP=4136;AC=24;AF=0.0058
SIVmac239M5SpXplasmid_reference_1269-10407	4194	.	t	g	62	PASS	DP=4136;AC=39;AF=0.0094
SIVmac239M5SpXplasmid_reference_1269-10407	4195	.	t	g	2	q30	DP=4160;AC=16;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	4197	.	c	a	1	q30	DP=4211;AC=15;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	4200	.	a	g	23	q30	DP=4035;AC=27;AF=0.0067
SIVmac239M5SpXplasmid_reference_1269-10407	4201	.	g	t	1	q30	DP=4068;AC=14;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	4202	.	a	g	1	q30	DP=3849;AC=13;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	4204	.	g	a	5	q30	DP=3858;AC=17;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	4204	.	g	t	5	q30	DP=3858;AC=17;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	4205	.	g	t	1	q30	DP=3859;AC=13;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	4206	.	c	a	13	q30	DP=3863;AC=22;AF=0.0057
SIVmac239M5SpXplasmid_reference_1269-10407	4208	.	g	t	2	q30	DP=3922;AC=15;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	4209	.	a	g	31	PASS	DP=3884;AC=29;AF=0.0075
SIVmac239M5SpXplasmid_reference_1269-10407	4210	.	g	t	2	q30	DP=3947;AC=15;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	4211	.	a	c	2	q30	DP=3943;AC=15;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	4212	.	t	a	30	PASS	DP=3929;AC=29;AF=0.0074
SIVmac239M5SpXplasmid_reference_1269-10407	4212	.	t	g	76	PASS	DP=3929;AC=41;AF=0.0104
SIVmac239M5SpXplasmid_reference_1269-10407	4213	.	c	a	44	PASS	DP=3912;AC=33;AF=0.0084
SIVmac239M5SpXplasmid_reference_1269-10407	4216	.	c	a	26	q30	DP=4037;AC=28;AF=0.0069
SIVmac239M5SpXplasmid_reference_1269-10407	4217	.	t	a	8	q30	DP=3967;AC=20;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	4217	.	t	g	24	q30	DP=3967;AC=27;AF=0.0068
SIVmac239M5SpXplasmid_reference_1269-10407	4219	.	t	g	24	q30	DP=3998;AC=27;AF=0.0068
SIVmac239M5SpXplasmid_reference_1269-10407	4220	.	g	a	1	q30	DP=4013;AC=13;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	4220	.	g	t	57	PASS	DP=4013;AC=37;AF=0.0092
SIVmac239M5SpXplasmid_reference_1269-10407	4221	.	g	t	1	q30	DP=4027;AC=13;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	4224	.	g	t	43	PASS	DP=3980;AC=33;AF=0.0083
SIVmac239M5SpXplasmid_reference_1269-10407	4225	.	g	t	19	q30	DP=3946;AC=25;AF=0.0063
SIVmac239M5SpXplasmid_reference_1269-10407	4226	.	g	t	10	q30	DP=3983;AC=21;AF=0.0053
SIVmac239M5SpXplasmid_reference_1269-10407	4227	.	a	g	3	q30	DP=3961;AC=16;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	4228	.	c	a	47	PASS	DP=3961;AC=34;AF=0.0086
SIVmac239M5SpXplasmid_reference_1269-10407	4228	.	c	g	1	q30	DP=3961;AC=14;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	4229	.	c	a	71	PASS	DP=3952;AC=40;AF=0.0101
SIVmac239M5SpXplasmid_reference_1269-10407	4229	.	c	g	9	q30	DP=3952;AC=20;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	4230	.	c	a	27	q30	DP=3948;AC=28;AF=0.0071
SIVmac239M5SpXplasmid_reference_1269-10407	4230	.	c	t	1	q30	DP=3948;AC=13;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	4231	.	g	t	7	q30	DP=3973;AC=19;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	4233	.	t	g	12	q30	DP=4010;AC=22;AF=0.0055
SIVmac239M5SpXplasmid_reference_1269-10407	4234	.	g	t	5	q30	DP=4066;AC=18;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	4235	.	a	g	8	q30	DP=4056;AC=20;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	4237	.	c	a	6	q30	DP=4123;AC=19;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	4238	.	t	g	19	q30	DP=4123;AC=26;AF=0.0063
SIVmac239M5SpXplasmid_reference_1269-10407	4240	.	t	a	2	q30	DP=4401;AC=16;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	4240	.	t	g	45	PASS	DP=4401;AC=36;AF=0.0082
SIVmac239M5SpXplasmid_reference_1269-10407	4241	.	t	a	3	q30	DP=4389;AC=18;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	4243	.	t	g	3	q30	DP=4390;AC=18;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	4244	.	g	t	3	q30	DP=4387;AC=18;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	4249	.	g	t	13	q30	DP=4275;AC=24;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	4250	.	g	t	17	q30	DP=4332;AC=26;AF=0.0060
SIVmac239M5SpXplasmid_reference_1269-10407	4251	.	g	t	4	q30	DP=4324;AC=18;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	4255	.	g	t	15	q30	DP=4349;AC=25;AF=0.0057
SIVmac239M5SpXplasmid_reference_1269-10407	4256	.	g	t	10	q30	DP=4383;AC=23;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	4257	.	a	g	1	q30	DP=4378;AC=14;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	4258	.	g	t	3	q30	DP=4373;AC=18;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	4259	.	c	a	1	q30	DP=4349;AC=15;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	4262	.	t	g	7	q30	DP=4368;AC=21;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	4263	.	c	a	12	q30	DP=4369;AC=24;AF=0.0055
SIVmac239M5SpXplasmid_reference_1269-10407	4265	.	t	a	1	q30	DP=4570;AC=15;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	4265	.	t	g	5	q30	DP=4570;AC=20;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	4266	.	c	a	2	q30	DP=4613;AC=17;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	4271	.	a	c	1	q30	DP=4613;AC=16;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	4276	.	g	a	1	q30	DP=4600;AC=15;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	4276	.	g	t	7	q30	DP=4600;AC=22;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	4277	.	g	a	3	q30	DP=4668;AC=19;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	4277	.	g	t	6	q30	DP=4668;AC=21;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	4280	.	c	a	1	q30	DP=4670;AC=15;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	4284	.	c	a	2	q30	DP=5017;AC=18;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	4286	.	t	a	7	q30	DP=4969;AC=23;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	4286	.	t	g	4	q30	DP=4969;AC=21;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	4297	.	c	a	19	q30	DP=4746;AC=29;AF=0.0061
SIVmac239M5SpXplasmid_reference_1269-10407	4298	.	c	a	31	PASS	DP=4673;AC=33;AF=0.0071
SIVmac239M5SpXplasmid_reference_1269-10407	4299	.	c	a	31	PASS	DP=4668;AC=33;AF=0.0071
SIVmac239M5SpXplasmid_reference_1269-10407	4307	.	a	c	1	q30	DP=4491;AC=15;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	4310	.	c	a	2	q30	DP=4509;AC=17;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	4316	.	t	g	25	q30	DP=4494;AC=30;AF=0.0067
SIVmac239M5SpXplasmid_reference_1269-10407	4317	.	t	g	4	q30	DP=4440;AC=19;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	4319	.	t	a	2	q30	DP=4476;AC=16;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	4319	.	t	g	2	q30	DP=4476;AC=16;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	4323	.	a	c	1	q30	DP=4491;AC=16;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	4326	.	t	g	15	q30	DP=4497;AC=26;AF=0.0058
SIVmac239M5SpXplasmid_reference_1269-10407	4327	.	t	g	12	q30	DP=4432;AC=24;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	4344	.	g	t	3	q30	DP=3981;AC=16;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	4346	.	t	g	2	q30	DP=3845;AC=14;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	4347	.	g	a	2	q30	DP=3867;AC=14;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	4347	.	g	t	6	q30	DP=3867;AC=18;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	4348	.	g	t	2	q30	DP=3870;AC=15;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	4350	.	t	g	5	q30	DP=3872;AC=17;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	4357	.	t	g	2	q30	DP=3570;AC=13;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	4358	.	c	a	1	q30	DP=3585;AC=12;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	4359	.	c	a	14	q30	DP=3559;AC=21;AF=0.0059
SIVmac239M5SpXplasmid_reference_1269-10407	4359	.	c	t	3	q30	DP=3559;AC=14;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	4360	.	c	a	30	PASS	DP=3574;AC=27;AF=0.0076
SIVmac239M5SpXplasmid_reference_1269-10407	4367	.	a	g	1	q30	DP=3389;AC=12;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	4373	.	c	a	2	q30	DP=3259;AC=12;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	4374	.	c	a	6	q30	DP=3218;AC=15;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	4376	.	g	t	11	q30	DP=3167;AC=18;AF=0.0057
SIVmac239M5SpXplasmid_reference_1269-10407	4378	.	g	t	2	q30	DP=3090;AC=11;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	4380	.	g	t	5	q30	DP=3068;AC=14;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	4381	.	g	t	1	q30	DP=3073;AC=10;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	4382	.	c	a	4	q30	DP=3064;AC=13;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	4389	.	g	t	17	q30	DP=2531;AC=17;AF=0.0067
SIVmac239M5SpXplasmid_reference_1269-10407	4392	.	g	t	34	PASS	DP=2510;AC=22;AF=0.0088
SIVmac239M5SpXplasmid_reference_1269-10407	4394	.	c	a	1	q30	DP=2449;AC=8;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	4399	.	c	a	1	q30	DP=2367;AC=8;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	4400	.	c	a	11	q30	DP=2363;AC=14;AF=0.0059
SIVmac239M5SpXplasmid_reference_1269-10407	4402	.	c	t	1	q30	DP=2246;AC=7;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	4408	.	a	c	2	q30	DP=2173;AC=8;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	4409	.	t	g	8	q30	DP=2159;AC=12;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	4411	.	t	g	7	q30	DP=2124;AC=11;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	4414	.	g	t	1	q30	DP=2113;AC=7;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	4417	.	a	c	2	q30	DP=2135;AC=8;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	4423	.	a	g	3	q30	DP=2102;AC=9;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	4424	.	a	g	2	q30	DP=2117;AC=8;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	4426	.	t	g	5	q30	DP=2081;AC=10;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	4428	.	a	g	1	q30	DP=2081;AC=7;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	4430	.	g	t	2	q30	DP=2099;AC=8;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	4431	.	a	g	3	q30	DP=2102;AC=9;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	4432	.	t	a	5	q30	DP=2116;AC=10;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	4432	.	t	g	24	q30	DP=2116;AC=17;AF=0.0080
SIVmac239M5SpXplasmid_reference_1269-10407	4434	.	t	g	3	q30	DP=2211;AC=9;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	4437	.	a	c	1	q30	DP=2288;AC=7;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	4440	.	a	c	18	q30	DP=2258;AC=16;AF=0.0071
SIVmac239M5SpXplasmid_reference_1269-10407	4440	.	a	g	1	q30	DP=2258;AC=7;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	4441	.	g	t	11	q30	DP=2336;AC=14;AF=0.0060
SIVmac239M5SpXplasmid_reference_1269-10407	4443	.	t	a	4	q30	DP=2317;AC=10;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	4443	.	t	g	1	q30	DP=2317;AC=7;AF=0.0030
SIVmac239M5SpXplasmid_reference_1269-10407	4444	.	t	a	1	q30	DP=2319;AC=7;AF=0.0030
SIVmac239M5SpXplasmid_reference_1269-10407	4444	.	t	g	34	PASS	DP=2319;AC=21;AF=0.0091
SIVmac239M5SpXplasmid_reference_1269-10407	4445	.	t	a	1	q30	DP=2320;AC=8;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	4445	.	t	g	1	q30	DP=2320;AC=8;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	4448	.	t	g	19	q30	DP=2394;AC=17;AF=0.0071
SIVmac239M5SpXplasmid_reference_1269-10407	4450	.	t	g	1	q30	DP=2354;AC=8;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	4452	.	t	g	11	q30	DP=2356;AC=14;AF=0.0059
SIVmac239M5SpXplasmid_reference_1269-10407	4455	.	c	a	26	q30	DP=2356;AC=19;AF=0.0081
SIVmac239M5SpXplasmid_reference_1269-10407	4456	.	c	a	11	q30	DP=2365;AC=14;AF=0.0059
SIVmac239M5SpXplasmid_reference_1269-10407	4456	.	c	t	1	q30	DP=2365;AC=8;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	4457	.	c	a	13	q30	DP=2366;AC=15;AF=0.0063
SIVmac239M5SpXplasmid_reference_1269-10407	4459	.	t	g	5	q30	DP=2522;AC=12;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	4460	.	t	g	5	q30	DP=2515;AC=12;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	4461	.	t	g	5	q30	DP=2518;AC=12;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	4465	.	g	t	1	q30	DP=2516;AC=8;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	4467	.	t	g	8	q30	DP=2472;AC=13;AF=0.0053
SIVmac239M5SpXplasmid_reference_1269-10407	4468	.	c	a	15	q30	DP=2464;AC=16;AF=0.0065
SIVmac239M5SpXplasmid_reference_1269-10407	4469	.	g	t	2	q30	DP=2475;AC=9;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	4473	.	g	t	59	PASS	DP=2523;AC=28;AF=0.0111
SIVmac239M5SpXplasmid_reference_1269-10407	4474	.	g	a	7	q30	DP=2571;AC=13;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	4474	.	g	t	25	q30	DP=2571;AC=20;AF=0.0078
SIVmac239M5SpXplasmid_reference_1269-10407	4476	.	c	a	5	q30	DP=2591;AC=12;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	4479	.	g	t	1	q30	DP=2615;AC=9;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	4481	.	t	a	2	q30	DP=2648;AC=10;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	4482	.	g	t	13	q30	DP=2637;AC=16;AF=0.0061
SIVmac239M5SpXplasmid_reference_1269-10407	4483	.	g	t	8	q30	DP=2651;AC=14;AF=0.0053
SIVmac239M5SpXplasmid_reference_1269-10407	4484	.	a	g	10	q30	DP=2666;AC=15;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	4485	.	c	a	10	q30	DP=2673;AC=15;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	4485	.	c	t	1	q30	DP=2673;AC=8;AF=0.0030
SIVmac239M5SpXplasmid_reference_1269-10407	4486	.	c	a	10	q30	DP=2678;AC=15;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	4488	.	g	t	1	q30	DP=2674;AC=8;AF=0.0030
SIVmac239M5SpXplasmid_reference_1269-10407	4495	.	a	t	1	q30	DP=2820;AC=9;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	4496	.	g	t	1	q30	DP=2888;AC=10;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	4497	.	t	g	1	q30	DP=2880;AC=10;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	4500	.	t	g	2	q30	DP=2921;AC=11;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	4503	.	t	g	11	q30	DP=2981;AC=17;AF=0.0057
SIVmac239M5SpXplasmid_reference_1269-10407	4505	.	c	a	13	q30	DP=2992;AC=18;AF=0.0060
SIVmac239M5SpXplasmid_reference_1269-10407	4506	.	c	a	38	PASS	DP=3003;AC=26;AF=0.0087
SIVmac239M5SpXplasmid_reference_1269-10407	4511	.	c	a	1	q30	DP=3324;AC=11;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	4513	.	g	t	1	q30	DP=3282;AC=11;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	4515	.	a	c	2	q30	DP=3297;AC=12;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	4517	.	g	t	4	q30	DP=3187;AC=14;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	4518	.	g	t	4	q30	DP=3171;AC=14;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	4522	.	c	a	1	q30	DP=3194;AC=10;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	4523	.	c	a	1	q30	DP=3180;AC=11;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	4525	.	t	g	12	q30	DP=3350;AC=19;AF=0.0057
SIVmac239M5SpXplasmid_reference_1269-10407	4526	.	t	g	6	q30	DP=3354;AC=16;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	4533	.	t	g	4	q30	DP=3506;AC=15;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	4536	.	a	c	1	q30	DP=3509;AC=11;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	4537	.	a	c	4	q30	DP=3516;AC=15;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	4538	.	g	t	38	PASS	DP=3532;AC=29;AF=0.0082
SIVmac239M5SpXplasmid_reference_1269-10407	4539	.	g	t	9	q30	DP=3626;AC=19;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	4540	.	g	t	1	q30	DP=3671;AC=13;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	4541	.	t	a	1	q30	DP=3567;AC=11;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	4541	.	t	g	1	q30	DP=3567;AC=12;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	4543	.	t	g	19	q30	DP=3569;AC=23;AF=0.0064
SIVmac239M5SpXplasmid_reference_1269-10407	4545	.	g	t	30	PASS	DP=3591;AC=27;AF=0.0075
SIVmac239M5SpXplasmid_reference_1269-10407	4549	.	t	g	3	q30	DP=3522;AC=14;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	4550	.	t	a	1	q30	DP=3512;AC=11;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	4550	.	t	g	1	q30	DP=3512;AC=12;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	4554	.	c	a	1	q30	DP=3513;AC=12;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	4556	.	c	a	7	q30	DP=3491;AC=17;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	4557	.	c	a	9	q30	DP=3490;AC=18;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	4565	.	g	t	18	q30	DP=3587;AC=23;AF=0.0064
SIVmac239M5SpXplasmid_reference_1269-10407	4566	.	g	a	3	q30	DP=3569;AC=14;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	4566	.	g	t	14	q30	DP=3569;AC=21;AF=0.0059
SIVmac239M5SpXplasmid_reference_1269-10407	4567	.	g	t	2	q30	DP=3565;AC=13;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	4569	.	g	t	10	q30	DP=3503;AC=19;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	4571	.	c	a	1	q30	DP=3663;AC=12;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	4573	.	c	a	11	q30	DP=3683;AC=20;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	4578	.	c	a	1	q30	DP=4205;AC=14;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	4588	.	g	t	3	q30	DP=3745;AC=15;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	4590	.	g	t	3	q30	DP=3775;AC=15;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	4591	.	g	t	4	q30	DP=3785;AC=16;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	4599	.	g	t	20	q30	DP=3637;AC=24;AF=0.0066
SIVmac239M5SpXplasmid_reference_1269-10407	4605	.	c	a	5	q30	DP=3553;AC=16;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	4613	.	t	g	2	q30	DP=3519;AC=13;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	4614	.	t	g	2	q30	DP=3497;AC=13;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	4617	.	g	t	10	q30	DP=3483;AC=19;AF=0.0055
SIVmac239M5SpXplasmid_reference_1269-10407	4632	.	c	a	18	q30	DP=3207;AC=21;AF=0.0065
SIVmac239M5SpXplasmid_reference_1269-10407	4637	.	t	g	1	q30	DP=3033;AC=10;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	4640	.	g	t	2	q30	DP=3024;AC=11;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	4642	.	a	g	1	q30	DP=2939;AC=10;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	4649	.	t	g	1	q30	DP=2860;AC=9;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	4660	.	c	a	2	q30	DP=2347;AC=9;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	4668	.	t	g	2	q30	DP=1944;AC=7;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	4670	.	c	a	2	q30	DP=1896;AC=7;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	4671	.	c	a	3	q30	DP=1722;AC=7;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	4672	.	t	a	2	q30	DP=1696;AC=6;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	4672	.	t	g	1	q30	DP=1696;AC=5;AF=0.0029
SIVmac239M5SpXplasmid_reference_1269-10407	4676	.	t	g	1	q30	DP=1642;AC=5;AF=0.0030
SIVmac239M5SpXplasmid_reference_1269-10407	4684	.	g	t	6	q30	DP=1329;AC=7;AF=0.0053
SIVmac239M5SpXplasmid_reference_1269-10407	4685	.	g	t	17	q30	DP=1386;AC=11;AF=0.0079
SIVmac239M5SpXplasmid_reference_1269-10407	4686	.	g	t	5	q30	DP=1389;AC=7;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	4687	.	a	c	1	q30;ac5	DP=1387;AC=4;AF=0.0029
SIVmac239M5SpXplasmid_reference_1269-10407	4687	.	a	g	1	q30;ac5	DP=1387;AC=4;AF=0.0029
SIVmac239M5SpXplasmid_reference_1269-10407	4689	.	a	g	1	q30;ac5	DP=1416;AC=4;AF=0.0028
SIVmac239M5SpXplasmid_reference_1269-10407	4692	.	t	c	1	q30	DP=1438;AC=5;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	4693	.	g	t	6	q30	DP=1498;AC=8;AF=0.0053
SIVmac239M5SpXplasmid_reference_1269-10407	4694	.	a	g	1	q30;ac5	DP=1438;AC=4;AF=0.0028
SIVmac239M5SpXplasmid_reference_1269-10407	4695	.	g	t	7	q30	DP=1436;AC=8;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	4696	.	a	c	1	q30;ac5	DP=1436;AC=4;AF=0.0028
SIVmac239M5SpXplasmid_reference_1269-10407	4697	.	a	c	2	q30	DP=1342;AC=5;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	4697	.	a	g	3	q30	DP=1342;AC=6;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	4698	.	g	t	3	q30	DP=1357;AC=6;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	4699	.	g	a	2	q30	DP=1348;AC=5;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	4701	.	c	a	1	q30;ac5	DP=1328;AC=4;AF=0.0030
SIVmac239M5SpXplasmid_reference_1269-10407	4702	.	c	a	49	PASS	DP=1400;AC=18;AF=0.0129
SIVmac239M5SpXplasmid_reference_1269-10407	4704	.	t	a	1	q30;ac5	DP=1412;AC=4;AF=0.0028
SIVmac239M5SpXplasmid_reference_1269-10407	4704	.	t	c	1	q30;ac5	DP=1412;AC=4;AF=0.0028
SIVmac239M5SpXplasmid_reference_1269-10407	4704	.	t	g	1	q30;ac5	DP=1412;AC=4;AF=0.0028
SIVmac239M5SpXplasmid_reference_1269-10407	4705	.	c	a	1	q30;ac5	DP=1412;AC=4;AF=0.0028
SIVmac239M5SpXplasmid_reference_1269-10407	4706	.	a	g	3	q30	DP=1404;AC=6;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	4707	.	g	t	6	q30	DP=1473;AC=8;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	4708	.	g	a	1	q30	DP=1436;AC=5;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	4708	.	g	t	12	q30	DP=1436;AC=10;AF=0.0070
SIVmac239M5SpXplasmid_reference_1269-10407	4709	.	g	a	3	q30	DP=1430;AC=6;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	4709	.	g	t	3	q30	DP=1430;AC=6;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	4722	.	t	c	1	q30;ac5	DP=1323;AC=4;AF=0.0030
SIVmac239M5SpXplasmid_reference_1269-10407	4724	.	t	g	3	q30	DP=1342;AC=6;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	4735	.	g	t	2	q30	DP=1371;AC=5;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	4739	.	c	t	1	q30;ac5	DP=1372;AC=4;AF=0.0029
SIVmac239M5SpXplasmid_reference_1269-10407	4740	.	c	a	8	q30	DP=1359;AC=8;AF=0.0059
SIVmac239M5SpXplasmid_reference_1269-10407	4740	.	c	t	5	q30	DP=1359;AC=7;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	4743	.	g	t	2	q30	DP=1345;AC=5;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	4745	.	g	t	1	q30;ac5	DP=1246;AC=4;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	4748	.	c	a	1	q30;ac5	DP=1349;AC=4;AF=0.0030
SIVmac239M5SpXplasmid_reference_1269-10407	4751	.	a	t	1	q30;ac5	DP=1369;AC=4;AF=0.0029
SIVmac239M5SpXplasmid_reference_1269-10407	4752	.	a	c	1	q30;ac5	DP=1374;AC=4;AF=0.0029
SIVmac239M5SpXplasmid_reference_1269-10407	4754	.	t	g	1	q30	DP=1466;AC=5;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	4757	.	c	a	1	q30	DP=1503;AC=5;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	4758	.	a	c	1	q30	DP=1508;AC=5;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	4760	.	g	t	5	q30	DP=1631;AC=8;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	4762	.	a	c	3	q30	DP=1653;AC=7;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	4763	.	c	a	1	q30	DP=1671;AC=5;AF=0.0030
SIVmac239M5SpXplasmid_reference_1269-10407	4766	.	a	c	1	q30	DP=1796;AC=6;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	4769	.	c	a	1	q30	DP=1995;AC=6;AF=0.0030
SIVmac239M5SpXplasmid_reference_1269-10407	4770	.	t	g	1	q30	DP=2001;AC=6;AF=0.0030
SIVmac239M5SpXplasmid_reference_1269-10407	4772	.	c	a	1	q30	DP=2077;AC=7;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	4775	.	t	g	8	q30	DP=2227;AC=12;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	4778	.	t	g	1	q30	DP=2333;AC=8;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	4784	.	c	a	2	q30	DP=2476;AC=9;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	4785	.	t	a	1	q30	DP=2458;AC=8;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	4788	.	a	c	4	q30	DP=2499;AC=11;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	4789	.	a	c	17	q30	DP=2505;AC=17;AF=0.0068
SIVmac239M5SpXplasmid_reference_1269-10407	4791	.	t	a	6	q30	DP=2617;AC=13;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	4791	.	t	g	3	q30	DP=2617;AC=11;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	4793	.	g	t	1	q30	DP=2629;AC=8;AF=0.0030
SIVmac239M5SpXplasmid_reference_1269-10407	4794	.	t	g	3	q30	DP=2627;AC=11;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	4798	.	c	a	2	q30	DP=2674;AC=10;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	4799	.	g	t	8	q30	DP=2658;AC=14;AF=0.0053
SIVmac239M5SpXplasmid_reference_1269-10407	4808	.	t	a	6	q30	DP=2905;AC=14;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	4808	.	t	g	10	q30	DP=2905;AC=16;AF=0.0055
SIVmac239M5SpXplasmid_reference_1269-10407	4809	.	c	a	6	q30	DP=2909;AC=14;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	4810	.	c	a	19	q30	DP=2919;AC=20;AF=0.0069
SIVmac239M5SpXplasmid_reference_1269-10407	4811	.	c	a	9	q30	DP=2932;AC=16;AF=0.0055
SIVmac239M5SpXplasmid_reference_1269-10407	4815	.	g	t	2	q30	DP=2995;AC=11;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	4816	.	a	g	4	q30	DP=3002;AC=13;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	4816	.	a	t	2	q30	DP=3002;AC=11;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	4817	.	g	t	1	q30	DP=3011;AC=10;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	4818	.	a	g	2	q30	DP=3004;AC=11;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	4819	.	g	t	1	q30	DP=3046;AC=10;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	4822	.	t	a	1	q30	DP=3080;AC=10;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	4822	.	t	g	20	q30	DP=3080;AC=21;AF=0.0068
SIVmac239M5SpXplasmid_reference_1269-10407	4824	.	c	a	1	q30	DP=3085;AC=10;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	4824	.	c	g	1	q30	DP=3085;AC=10;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	4825	.	c	a	32	PASS	DP=3099;AC=25;AF=0.0081
SIVmac239M5SpXplasmid_reference_1269-10407	4827	.	c	a	6	q30	DP=3192;AC=15;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	4828	.	c	a	2	q30	DP=3193;AC=12;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	4829	.	t	a	1	q30	DP=3193;AC=10;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	4829	.	t	g	37	PASS	DP=3193;AC=27;AF=0.0085
SIVmac239M5SpXplasmid_reference_1269-10407	4838	.	t	a	4	q30	DP=3292;AC=14;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	4838	.	t	g	35	PASS	DP=3292;AC=27;AF=0.0082
SIVmac239M5SpXplasmid_reference_1269-10407	4839	.	g	t	4	q30	DP=3322;AC=14;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	4843	.	a	c	2	q30	DP=3366;AC=12;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	4846	.	a	c	5	q30	DP=3373;AC=15;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	4846	.	a	g	2	q30	DP=3373;AC=13;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	4849	.	c	a	1	q30	DP=3569;AC=12;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	4852	.	t	g	9	q30	DP=3622;AC=19;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	4856	.	a	g	4	q30	DP=3604;AC=15;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	4856	.	a	t	2	q30	DP=3604;AC=13;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	4858	.	a	c	1	q30	DP=3483;AC=12;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	4859	.	g	t	1	q30	DP=3493;AC=11;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	4860	.	g	t	1	q30	DP=3502;AC=12;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	4861	.	c	a	22	q30	DP=3502;AC=24;AF=0.0069
SIVmac239M5SpXplasmid_reference_1269-10407	4862	.	c	a	9	q30	DP=3496;AC=18;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	4863	.	t	g	15	q30	DP=3475;AC=21;AF=0.0060
SIVmac239M5SpXplasmid_reference_1269-10407	4864	.	t	g	5	q30	DP=3497;AC=16;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	4865	.	c	a	2	q30	DP=3502;AC=13;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	4866	.	g	a	2	q30	DP=3514;AC=13;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	4866	.	g	t	1	q30	DP=3514;AC=11;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	4868	.	a	c	12	q30	DP=3514;AC=20;AF=0.0057
SIVmac239M5SpXplasmid_reference_1269-10407	4869	.	t	g	1	q30	DP=3555;AC=11;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	4871	.	g	a	1	q30	DP=3596;AC=12;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	4872	.	c	a	1	q30	DP=3601;AC=12;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	4873	.	t	g	2	q30	DP=3608;AC=13;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	4875	.	a	c	1	q30	DP=3741;AC=12;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	4877	.	c	a	5	q30	DP=3759;AC=17;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	4881	.	a	c	3	q30	DP=3796;AC=15;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	4881	.	a	g	2	q30	DP=3796;AC=14;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	4882	.	c	a	6	q30	DP=3859;AC=18;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	4885	.	t	a	10	q30	DP=3937;AC=21;AF=0.0053
SIVmac239M5SpXplasmid_reference_1269-10407	4885	.	t	g	4	q30	DP=3937;AC=17;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	4889	.	g	t	11	q30	DP=3897;AC=21;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	4890	.	g	t	12	q30	DP=3936;AC=22;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	4893	.	a	t	4	q30	DP=3859;AC=16;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	4894	.	t	a	1	q30	DP=3861;AC=12;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	4894	.	t	g	5	q30	DP=3861;AC=17;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	4898	.	c	a	1	q30	DP=3938;AC=14;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	4901	.	a	g	8	q30	DP=3802;AC=19;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	4902	.	g	t	4	q30	DP=3783;AC=16;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	4903	.	a	g	7	q30	DP=3765;AC=18;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	4906	.	c	a	7	q30	DP=3750;AC=18;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	4907	.	g	a	1	q30	DP=3728;AC=13;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	4907	.	g	t	4	q30	DP=3728;AC=16;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	4914	.	c	a	19	q30	DP=3754;AC=24;AF=0.0064
SIVmac239M5SpXplasmid_reference_1269-10407	4915	.	a	c	1	q30	DP=3745;AC=13;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	4915	.	a	g	2	q30	DP=3745;AC=14;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	4916	.	c	a	5	q30	DP=3806;AC=17;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	4917	.	c	a	2	q30	DP=3790;AC=14;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	4918	.	t	a	3	q30	DP=3870;AC=16;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	4918	.	t	g	20	q30	DP=3870;AC=25;AF=0.0065
SIVmac239M5SpXplasmid_reference_1269-10407	4920	.	c	a	2	q30	DP=3895;AC=15;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	4921	.	c	a	22	q30	DP=3888;AC=26;AF=0.0067
SIVmac239M5SpXplasmid_reference_1269-10407	4922	.	a	c	5	q30	DP=3850;AC=17;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	4924	.	g	t	4	q30	DP=3828;AC=16;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	4925	.	g	a	2	q30	DP=3787;AC=14;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	4926	.	g	t	10	q30	DP=3783;AC=20;AF=0.0053
SIVmac239M5SpXplasmid_reference_1269-10407	4927	.	a	c	4	q30	DP=3686;AC=16;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	4929	.	c	a	6	q30	DP=3678;AC=17;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	4930	.	t	g	1	q30	DP=3681;AC=13;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	4932	.	a	c	2	q30	DP=3722;AC=14;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	4933	.	t	g	1	q30	DP=3736;AC=12;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	4934	.	t	a	1	q30	DP=3727;AC=12;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	4935	.	t	a	4	q30	DP=3710;AC=16;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	4935	.	t	g	10	q30	DP=3710;AC=20;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	4936	.	t	a	12	q30	DP=3712;AC=21;AF=0.0057
SIVmac239M5SpXplasmid_reference_1269-10407	4936	.	t	g	5	q30	DP=3712;AC=17;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	4937	.	c	a	28	q30	DP=3716;AC=27;AF=0.0073
SIVmac239M5SpXplasmid_reference_1269-10407	4938	.	c	a	19	q30	DP=3708;AC=24;AF=0.0065
SIVmac239M5SpXplasmid_reference_1269-10407	4941	.	g	t	3	q30	DP=3740;AC=15;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	4942	.	t	a	8	q30	DP=3731;AC=19;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	4942	.	t	g	1	q30	DP=3731;AC=12;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	4944	.	t	g	5	q30	DP=3728;AC=17;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	4945	.	g	t	1	q30	DP=3720;AC=13;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	4946	.	g	t	4	q30	DP=3716;AC=16;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	4947	.	c	a	17	q30	DP=3716;AC=23;AF=0.0062
SIVmac239M5SpXplasmid_reference_1269-10407	4948	.	a	c	6	q30	DP=3670;AC=17;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	4949	.	a	c	4	q30	DP=3662;AC=16;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	4950	.	a	c	7	q30	DP=3640;AC=18;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	4953	.	t	a	17	q30	DP=3719;AC=23;AF=0.0062
SIVmac239M5SpXplasmid_reference_1269-10407	4953	.	t	c	2	q30	DP=3719;AC=14;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	4954	.	c	a	10	q30	DP=3725;AC=20;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	4956	.	t	c	1	q30	DP=3758;AC=13;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	4956	.	t	g	3	q30	DP=3758;AC=15;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	4957	.	g	t	4	q30	DP=3767;AC=16;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	4958	.	g	a	3	q30	DP=3776;AC=15;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	4958	.	g	t	1	q30	DP=3776;AC=12;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	4959	.	g	a	4	q30	DP=3796;AC=16;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	4963	.	a	c	1	q30	DP=3634;AC=12;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	4966	.	g	a	2	q30	DP=3592;AC=13;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	4967	.	g	t	8	q30	DP=3572;AC=18;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	4972	.	a	c	3	q30	DP=3479;AC=14;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	4974	.	g	t	11	q30	DP=3468;AC=19;AF=0.0055
SIVmac239M5SpXplasmid_reference_1269-10407	4976	.	a	t	1	q30	DP=3429;AC=12;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	4983	.	a	c	2	q30	DP=3323;AC=12;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	4987	.	c	a	13	q30	DP=3406;AC=20;AF=0.0059
SIVmac239M5SpXplasmid_reference_1269-10407	4989	.	c	a	5	q30	DP=3397;AC=15;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	4990	.	c	a	8	q30	DP=3329;AC=17;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	4994	.	c	a	2	q30	DP=3379;AC=12;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	4995	.	t	a	1	q30	DP=3218;AC=10;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	5001	.	a	c	14	q30	DP=3371;AC=20;AF=0.0059
SIVmac239M5SpXplasmid_reference_1269-10407	5002	.	a	c	1	q30	DP=3266;AC=10;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	5004	.	t	g	1	q30	DP=3345;AC=11;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	5011	.	a	c	1	q30	DP=3084;AC=10;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	5015	.	g	t	3	q30	DP=3003;AC=12;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	5016	.	t	a	1	q30	DP=2947;AC=10;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	5016	.	t	g	1	q30	DP=2947;AC=10;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	5018	.	t	g	4	q30	DP=3010;AC=13;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	5020	.	t	g	1	q30	DP=2959;AC=9;AF=0.0030
SIVmac239M5SpXplasmid_reference_1269-10407	5025	.	c	a	3	q30	DP=2914;AC=12;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	5028	.	a	c	2	q30	DP=2770;AC=10;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	5028	.	a	g	1	q30	DP=2770;AC=9;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	5029	.	a	c	2	q30	DP=2771;AC=10;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	5029	.	a	g	7	q30	DP=2771;AC=14;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	5030	.	g	t	2	q30	DP=2841;AC=11;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	5031	.	g	t	1	q30	DP=2811;AC=9;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	5032	.	c	a	7	q30	DP=2817;AC=14;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	5033	.	t	g	7	q30	DP=2804;AC=14;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	5034	.	t	g	13	q30	DP=2826;AC=17;AF=0.0060
SIVmac239M5SpXplasmid_reference_1269-10407	5037	.	t	a	1	q30	DP=2933;AC=9;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	5037	.	t	g	12	q30	DP=2933;AC=17;AF=0.0058
SIVmac239M5SpXplasmid_reference_1269-10407	5038	.	t	g	6	q30	DP=2917;AC=14;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	5039	.	t	g	12	q30	DP=2856;AC=17;AF=0.0060
SIVmac239M5SpXplasmid_reference_1269-10407	5041	.	t	g	2	q30	DP=2841;AC=11;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	5043	.	c	a	1	q30	DP=2830;AC=10;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	5045	.	t	g	13	q30	DP=2771;AC=17;AF=0.0061
SIVmac239M5SpXplasmid_reference_1269-10407	5046	.	t	g	4	q30	DP=2761;AC=12;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	5048	.	c	a	4	q30	DP=2822;AC=12;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	5053	.	a	c	3	q30	DP=2787;AC=11;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	5058	.	t	g	2	q30	DP=2738;AC=10;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	5059	.	g	a	1	q30	DP=2792;AC=9;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	5063	.	a	c	1	q30	DP=2785;AC=9;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	5067	.	c	a	2	q30	DP=2795;AC=10;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	5068	.	t	g	7	q30	DP=2737;AC=14;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	5070	.	g	t	1	q30	DP=2745;AC=9;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	5071	.	g	t	7	q30	DP=2759;AC=14;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	5072	.	g	a	1	q30	DP=2753;AC=9;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	5072	.	g	t	2	q30	DP=2753;AC=10;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	5074	.	a	t	5	q30	DP=2599;AC=12;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	5076	.	g	t	3	q30	DP=2672;AC=11;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	5077	.	g	t	3	q30	DP=2707;AC=11;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	5081	.	t	g	3	q30	DP=2714;AC=11;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	5082	.	g	t	6	q30	DP=2680;AC=13;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	5083	.	g	t	9	q30	DP=2751;AC=15;AF=0.0055
SIVmac239M5SpXplasmid_reference_1269-10407	5084	.	g	t	3	q30	DP=2725;AC=11;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	5085	.	g	t	1	q30	DP=2707;AC=9;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	5086	.	c	a	4	q30	DP=2697;AC=12;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	5086	.	c	g	2	q30	DP=2697;AC=10;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	5088	.	g	t	1	q30	DP=2727;AC=9;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	5089	.	g	t	9	q30	DP=2725;AC=15;AF=0.0055
SIVmac239M5SpXplasmid_reference_1269-10407	5091	.	g	t	7	q30	DP=2811;AC=14;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	5093	.	a	c	2	q30	DP=2782;AC=10;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	5095	.	g	a	2	q30	DP=2785;AC=10;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	5100	.	c	a	30	PASS	DP=2849;AC=23;AF=0.0081
SIVmac239M5SpXplasmid_reference_1269-10407	5101	.	c	a	1	q30	DP=2851;AC=9;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	5104	.	g	t	2	q30	DP=2882;AC=11;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	5106	.	c	a	5	q30	DP=2869;AC=13;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	5108	.	t	g	3	q30	DP=2911;AC=12;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	5109	.	c	a	3	q30	DP=3000;AC=12;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	5111	.	t	c	4	q30	DP=3032;AC=13;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	5112	.	c	a	4	q30	DP=3098;AC=13;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	5113	.	c	a	1	q30	DP=3096;AC=10;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	5114	.	t	a	5	q30	DP=3098;AC=14;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	5114	.	t	g	14	q30	DP=3098;AC=19;AF=0.0061
SIVmac239M5SpXplasmid_reference_1269-10407	5115	.	c	a	6	q30	DP=3108;AC=15;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	5117	.	t	c	6	q30	DP=3118;AC=15;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	5117	.	t	g	3	q30	DP=3118;AC=13;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	5118	.	c	a	10	q30	DP=3115;AC=17;AF=0.0055
SIVmac239M5SpXplasmid_reference_1269-10407	5119	.	c	a	2	q30	DP=3112;AC=12;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	5120	.	c	a	25	q30	DP=3145;AC=23;AF=0.0073
SIVmac239M5SpXplasmid_reference_1269-10407	5120	.	c	t	3	q30	DP=3145;AC=13;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	5121	.	c	a	8	q30	DP=3130;AC=16;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	5122	.	c	a	3	q30	DP=3424;AC=14;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	5123	.	t	a	9	q30	DP=3470;AC=18;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	5123	.	t	g	9	q30	DP=3470;AC=18;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	5124	.	c	a	1	q30	DP=3489;AC=12;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	5127	.	g	t	3	q30	DP=3587;AC=14;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	5128	.	g	t	5	q30	DP=3645;AC=16;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	5129	.	a	c	3	q30	DP=3631;AC=15;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	5131	.	t	a	1	q30	DP=3572;AC=12;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	5131	.	t	g	6	q30	DP=3572;AC=17;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	5136	.	t	g	23	q30	DP=3862;AC=26;AF=0.0067
SIVmac239M5SpXplasmid_reference_1269-10407	5139	.	a	c	6	q30	DP=3931;AC=18;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	5143	.	a	c	2	q30	DP=3923;AC=15;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	5144	.	a	c	1	q30	DP=3940;AC=14;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	5148	.	a	c	1	q30	DP=3935;AC=14;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	5149	.	g	t	1	q30	DP=3949;AC=13;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	5151	.	c	a	2	q30	DP=3934;AC=15;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	5152	.	c	a	7	q30	DP=3923;AC=19;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	5153	.	t	a	9	q30	DP=3922;AC=20;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	5153	.	t	g	17	q30	DP=3922;AC=24;AF=0.0061
SIVmac239M5SpXplasmid_reference_1269-10407	5154	.	c	a	3	q30	DP=3987;AC=16;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	5159	.	a	c	3	q30	DP=4055;AC=16;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	5160	.	a	c	13	q30	DP=4049;AC=23;AF=0.0057
SIVmac239M5SpXplasmid_reference_1269-10407	5161	.	a	c	28	q30	DP=4087;AC=29;AF=0.0071
SIVmac239M5SpXplasmid_reference_1269-10407	5162	.	t	g	13	q30	DP=4082;AC=23;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	5164	.	a	c	6	q30	DP=4098;AC=19;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	5165	.	a	c	1	q30	DP=4101;AC=14;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	5166	.	g	t	11	q30	DP=4110;AC=22;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	5167	.	g	a	3	q30	DP=4122;AC=17;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	5167	.	g	t	7	q30	DP=4122;AC=20;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	5170	.	c	a	3	q30	DP=4221;AC=17;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	5172	.	c	a	1	q30	DP=4314;AC=15;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	5174	.	a	c	12	q30	DP=4376;AC=24;AF=0.0055
SIVmac239M5SpXplasmid_reference_1269-10407	5175	.	a	c	32	PASS	DP=4375;AC=32;AF=0.0073
SIVmac239M5SpXplasmid_reference_1269-10407	5176	.	g	t	3	q30	DP=4410;AC=18;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	5177	.	g	a	6	q30	DP=4403;AC=20;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	5177	.	g	t	1	q30	DP=4403;AC=15;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	5178	.	g	t	10	q30	DP=4405;AC=23;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	5181	.	c	a	4	q30	DP=4514;AC=19;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	5182	.	c	a	3	q30	DP=4482;AC=18;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	5186	.	g	a	1	q30	DP=4583;AC=15;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	5187	.	g	t	1	q30	DP=4601;AC=15;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	5188	.	a	c	1	q30	DP=4625;AC=16;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	5191	.	a	c	2	q30	DP=4731;AC=17;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	5192	.	a	c	2	q30	DP=4740;AC=17;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	5193	.	t	g	2	q30	DP=4721;AC=18;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	5194	.	g	t	19	q30	DP=4773;AC=29;AF=0.0061
SIVmac239M5SpXplasmid_reference_1269-10407	5195	.	g	t	2	q30	DP=4791;AC=18;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	5197	.	t	c	4	q30	DP=4924;AC=21;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	5201	.	g	t	1	q30	DP=4910;AC=17;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	5203	.	a	c	2	q30	DP=4842;AC=18;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	5206	.	t	a	64	PASS	DP=4868;AC=44;AF=0.0090
SIVmac239M5SpXplasmid_reference_1269-10407	5206	.	t	c	12	q30	DP=4868;AC=26;AF=0.0053
SIVmac239M5SpXplasmid_reference_1269-10407	5206	.	t	g	2	q30	DP=4868;AC=18;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	5207	.	t	a	7	q30	DP=4856;AC=23;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	5220	.	a	c	1	q30	DP=4794;AC=16;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	5221	.	a	c	2	q30	DP=4802;AC=18;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	5224	.	a	c	2	q30	DP=4851;AC=18;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	5227	.	a	c	2	q30	DP=4830;AC=18;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	5231	.	t	a	7	q30	DP=4853;AC=23;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	5232	.	t	a	2	q30	DP=4854;AC=18;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	5232	.	t	g	1	q30	DP=4854;AC=16;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	5241	.	t	g	1	q30	DP=4844;AC=16;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	5246	.	t	g	3	q30	DP=4864;AC=19;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	5248	.	c	a	16	q30	DP=4833;AC=28;AF=0.0058
SIVmac239M5SpXplasmid_reference_1269-10407	5250	.	c	a	1	q30	DP=4856;AC=17;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	5252	.	c	a	1	q30	DP=4909;AC=17;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	5259	.	a	c	4	q30	DP=4839;AC=20;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	5264	.	a	t	1	q30	DP=4763;AC=17;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	5265	.	c	a	1	q30	DP=4755;AC=16;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	5266	.	t	g	5	q30	DP=4693;AC=21;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	5268	.	g	a	1	q30	DP=4789;AC=16;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	5271	.	a	c	2	q30	DP=4713;AC=17;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	5272	.	a	c	1	q30	DP=4745;AC=15;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	5287	.	g	t	1	q30	DP=4731;AC=16;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	5288	.	a	c	1	q30	DP=4331;AC=14;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	5290	.	a	c	2	q30	DP=4013;AC=15;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	5292	.	g	t	2	q30	DP=4039;AC=15;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	5293	.	g	t	1	q30	DP=4038;AC=14;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	5294	.	a	g	1	q30	DP=4021;AC=14;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	5296	.	a	g	2	q30	DP=3834;AC=14;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	5299	.	c	a	1	q30	DP=4031;AC=13;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	5300	.	c	a	15	q30	DP=4060;AC=24;AF=0.0059
SIVmac239M5SpXplasmid_reference_1269-10407	5301	.	c	a	5	q30	DP=4030;AC=18;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	5302	.	t	g	1	q30	DP=3998;AC=13;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	5304	.	g	t	1	q30	DP=4006;AC=13;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	5305	.	a	c	5	q30	DP=4000;AC=18;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	5306	.	g	t	1	q30	DP=3992;AC=14;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	5307	.	g	a	1	q30	DP=3916;AC=13;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	5308	.	g	a	2	q30	DP=3875;AC=15;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	5308	.	g	t	6	q30	DP=3875;AC=18;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	5309	.	a	g	5	q30	DP=3755;AC=17;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	5313	.	g	t	4	q30	DP=3788;AC=16;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	5314	.	g	t	1	q30	DP=3789;AC=13;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	5316	.	g	t	1	q30	DP=3824;AC=12;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	5320	.	t	g	8	q30	DP=3754;AC=19;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	5323	.	t	g	2	q30	DP=3906;AC=14;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	5329	.	t	g	1	q30	DP=3855;AC=12;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	5331	.	c	a	7	q30	DP=3742;AC=18;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	5332	.	t	c	1	q30	DP=3723;AC=12;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	5333	.	c	a	1	q30	DP=3746;AC=12;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	5339	.	a	g	12	q30	DP=3714;AC=21;AF=0.0057
SIVmac239M5SpXplasmid_reference_1269-10407	5339	.	a	t	1	q30	DP=3714;AC=12;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	5340	.	g	t	3	q30	DP=3720;AC=15;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	5344	.	t	c	1	q30	DP=3795;AC=13;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	5344	.	t	g	18	q30	DP=3795;AC=24;AF=0.0063
SIVmac239M5SpXplasmid_reference_1269-10407	5345	.	c	a	2	q30	DP=3873;AC=14;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	5346	.	t	g	6	q30	DP=3866;AC=18;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	5347	.	t	a	2	q30	DP=3874;AC=15;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	5347	.	t	g	2	q30	DP=3874;AC=15;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	5354	.	t	g	20	q30	DP=3851;AC=25;AF=0.0065
SIVmac239M5SpXplasmid_reference_1269-10407	5355	.	t	a	1	q30	DP=3848;AC=12;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	5355	.	t	g	8	q30	DP=3848;AC=19;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	5356	.	t	g	2	q30	DP=3865;AC=14;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	5357	.	c	a	1	q30	DP=3867;AC=12;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	5361	.	g	t	8	q30	DP=3835;AC=19;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	5362	.	g	t	3	q30	DP=3849;AC=15;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	5364	.	g	t	6	q30	DP=3806;AC=18;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	5365	.	g	t	6	q30	DP=3839;AC=18;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	5366	.	a	c	3	q30	DP=3832;AC=15;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	5373	.	c	a	2	q30	DP=3894;AC=14;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	5375	.	c	a	1	q30	DP=3985;AC=13;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	5376	.	t	g	19	q30	DP=3972;AC=25;AF=0.0063
SIVmac239M5SpXplasmid_reference_1269-10407	5377	.	c	a	1	q30	DP=3980;AC=14;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	5381	.	a	c	7	q30	DP=3940;AC=19;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	5381	.	a	g	1	q30	DP=3940;AC=13;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	5382	.	a	t	1	q30	DP=3934;AC=14;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	5383	.	t	g	12	q30	DP=3929;AC=22;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	5384	.	c	a	1	q30	DP=3820;AC=13;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	5385	.	g	t	3	q30	DP=3822;AC=15;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	5386	.	g	a	1	q30	DP=3817;AC=13;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	5387	.	c	a	4	q30	DP=3812;AC=16;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	5388	.	c	a	5	q30	DP=3812;AC=17;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	5391	.	c	a	4	q30	DP=3918;AC=17;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	5392	.	c	a	4	q30	DP=3934;AC=17;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	5394	.	g	t	10	q30	DP=3958;AC=21;AF=0.0053
SIVmac239M5SpXplasmid_reference_1269-10407	5395	.	g	a	1	q30	DP=3980;AC=13;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	5395	.	g	t	10	q30	DP=3980;AC=21;AF=0.0053
SIVmac239M5SpXplasmid_reference_1269-10407	5396	.	g	a	1	q30	DP=3967;AC=13;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	5396	.	g	t	30	PASS	DP=3967;AC=29;AF=0.0073
SIVmac239M5SpXplasmid_reference_1269-10407	5397	.	g	a	3	q30	DP=3974;AC=16;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	5397	.	g	t	27	q30	DP=3974;AC=28;AF=0.0070
SIVmac239M5SpXplasmid_reference_1269-10407	5398	.	g	t	1	q30	DP=4011;AC=14;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	5399	.	a	c	27	q30	DP=3981;AC=28;AF=0.0070
SIVmac239M5SpXplasmid_reference_1269-10407	5399	.	a	g	2	q30	DP=3981;AC=15;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	5399	.	a	t	2	q30	DP=3981;AC=15;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	5401	.	g	t	2	q30	DP=4006;AC=15;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	5406	.	c	a	2	q30	DP=4048;AC=15;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	5409	.	c	a	5	q30	DP=4222;AC=19;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	5410	.	t	c	2	q30	DP=4220;AC=16;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	5411	.	c	a	23	q30	DP=4266;AC=28;AF=0.0066
SIVmac239M5SpXplasmid_reference_1269-10407	5418	.	a	c	18	q30	DP=5038;AC=30;AF=0.0060
SIVmac239M5SpXplasmid_reference_1269-10407	5420	.	a	c	2	q30	DP=5020;AC=19;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	5422	.	c	a	6	q30	DP=4809;AC=22;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	5423	.	g	t	4	q30	DP=4834;AC=20;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	5425	.	c	a	16	q30	DP=4876;AC=28;AF=0.0057
SIVmac239M5SpXplasmid_reference_1269-10407	5426	.	c	a	2	q30	DP=6106;AC=22;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	5427	.	t	g	5	q30	DP=6130;AC=26;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	5428	.	c	a	1	q30	DP=6537;AC=22;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	5432	.	a	c	8	q30	DP=6609;AC=31;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	5433	.	a	c	4	q30	DP=6594;AC=27;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	5436	.	a	c	3	q30	DP=6402;AC=25;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	5448	.	a	c	2	q30	DP=8942;AC=33;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	5451	.	c	a	8	q30	DP=9335;AC=42;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	5468	.	g	t	10	q30	DP=10902;AC=51;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	5469	.	c	a	7	q30	DP=10928;AC=48;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	5472	.	c	a	3	q30	DP=11464;AC=44;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	5473	.	c	a	4	q30	DP=11476;AC=47;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	5475	.	t	g	1	q30	DP=11462;AC=39;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	5476	.	t	g	18	q30	DP=11502;AC=59;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	5477	.	g	t	8	q30	DP=11528;AC=51;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	5478	.	c	a	4	q30	DP=11530;AC=46;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	5479	.	c	a	1	q30	DP=11501;AC=41;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	5480	.	a	c	1	q30	DP=11477;AC=41;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	5483	.	t	g	5	q30	DP=11681;AC=49;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	5484	.	t	g	6	q30	DP=11837;AC=50;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	5490	.	t	g	22	q30	DP=11810;AC=63;AF=0.0053
SIVmac239M5SpXplasmid_reference_1269-10407	5491	.	c	a	3	q30	DP=11838;AC=46;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	5492	.	t	g	40	PASS	DP=11889;AC=73;AF=0.0061
SIVmac239M5SpXplasmid_reference_1269-10407	5493	.	t	g	5	q30	DP=11920;AC=50;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	5499	.	a	c	1	q30	DP=11970;AC=41;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	5500	.	g	t	4	q30	DP=12164;AC=49;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	5502	.	c	a	6	q30	DP=12232;AC=52;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	5503	.	t	g	12	q30	DP=12202;AC=58;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	5505	.	g	t	14	q30	DP=12391;AC=60;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	5506	.	g	t	35	PASS	DP=12824;AC=75;AF=0.0058
SIVmac239M5SpXplasmid_reference_1269-10407	5507	.	g	a	5	q30	DP=12917;AC=54;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	5507	.	g	t	5	q30	DP=12917;AC=53;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	5521	.	c	a	5	q30	DP=13951;AC=57;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	5531	.	a	c	4	q30	DP=13646;AC=55;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	5533	.	a	c	5	q30	DP=13737;AC=57;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	5535	.	a	c	1	q30	DP=13841;AC=50;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	5543	.	c	a	2	q30	DP=13848;AC=52;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	5544	.	t	a	46	PASS	DP=13806;AC=85;AF=0.0062
SIVmac239M5SpXplasmid_reference_1269-10407	5544	.	t	g	100	PASS	DP=13806;AC=147;AF=0.0106
SIVmac239M5SpXplasmid_reference_1269-10407	5545	.	c	a	30	PASS	DP=13818;AC=77;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	5569	.	t	g	1	q30	DP=14616;AC=51;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	5571	.	t	g	1	q30	DP=14637;AC=50;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	5583	.	c	a	1	q30	DP=14429;AC=51;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	5585	.	a	c	4	q30	DP=14436;AC=58;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	5589	.	a	c	9	q30	DP=14386;AC=64;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	5597	.	a	c	25	q30	DP=14251;AC=76;AF=0.0053
SIVmac239M5SpXplasmid_reference_1269-10407	5600	.	t	a	3	q30	DP=13562;AC=52;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	5601	.	c	a	19	q30	DP=13597;AC=69;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	5604	.	g	t	9	q30	DP=13576;AC=61;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	5605	.	g	t	19	q30	DP=13574;AC=69;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	5606	.	g	t	9	q30	DP=13569;AC=61;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	5610	.	c	a	5	q30	DP=13111;AC=54;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	5621	.	c	a	4	q30	DP=12791;AC=52;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	5623	.	c	a	2	q30	DP=12791;AC=48;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	5624	.	c	a	8	q30	DP=12667;AC=56;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	5642	.	c	a	1	q30	DP=11561;AC=39;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	5646	.	g	t	4	q30	DP=11548;AC=47;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	5647	.	g	t	4	q30	DP=11473;AC=47;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	5649	.	a	c	9	q30	DP=11383;AC=52;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	5649	.	a	t	1	q30	DP=11383;AC=39;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	5678	.	t	g	20	q30	DP=10215;AC=55;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	5682	.	g	t	8	q30	DP=9797;AC=44;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	5683	.	g	t	2	q30	DP=9891;AC=37;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	5685	.	g	t	2	q30	DP=9427;AC=35;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	5688	.	c	a	21	q30	DP=9438;AC=52;AF=0.0055
SIVmac239M5SpXplasmid_reference_1269-10407	5689	.	c	a	7	q30	DP=9362;AC=42;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	5689	.	c	t	3	q30	DP=9362;AC=36;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	5693	.	t	g	6	q30	DP=9396;AC=41;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	5695	.	g	t	1	q30	DP=9172;AC=33;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	5696	.	g	t	4	q30	DP=9182;AC=38;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	5698	.	g	t	2	q30	DP=9195;AC=35;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	5699	.	g	t	31	PASS	DP=9203;AC=56;AF=0.0061
SIVmac239M5SpXplasmid_reference_1269-10407	5700	.	a	c	1	q30	DP=8954;AC=30;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	5701	.	a	c	1	q30	DP=8978;AC=32;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	5703	.	g	t	3	q30	DP=9112;AC=35;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	5712	.	c	a	1	q30	DP=9157;AC=32;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	5713	.	c	a	3	q30	DP=8940;AC=35;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	5714	.	c	a	21	q30	DP=8978;AC=50;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	5715	.	c	a	2	q30	DP=8980;AC=33;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	5718	.	t	g	4	q30	DP=9289;AC=38;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	5719	.	t	g	24	q30	DP=9293;AC=53;AF=0.0057
SIVmac239M5SpXplasmid_reference_1269-10407	5720	.	t	g	8	q30	DP=9297;AC=42;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	5722	.	g	t	10	q30	DP=9384;AC=44;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	5724	.	g	t	2	q30	DP=9380;AC=35;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	5728	.	c	a	1	q30	DP=9869;AC=35;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	5729	.	c	a	1	q30	DP=10002;AC=35;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	5731	.	a	c	2	q30	DP=10041;AC=38;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	5732	.	g	t	1	q30	DP=10367;AC=37;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	5734	.	a	c	26	q30	DP=10387;AC=59;AF=0.0057
SIVmac239M5SpXplasmid_reference_1269-10407	5737	.	g	t	5	q30	DP=10366;AC=44;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	5738	.	g	t	42	PASS	DP=10343;AC=66;AF=0.0064
SIVmac239M5SpXplasmid_reference_1269-10407	5739	.	g	t	2	q30	DP=10430;AC=38;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	5740	.	a	c	17	q30	DP=10416;AC=54;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	5744	.	t	g	11	q30	DP=10348;AC=49;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	5745	.	t	g	3	q30	DP=10349;AC=41;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	5746	.	g	t	66	PASS	DP=10308;AC=75;AF=0.0073
SIVmac239M5SpXplasmid_reference_1269-10407	5747	.	g	t	32	PASS	DP=10374;AC=62;AF=0.0060
SIVmac239M5SpXplasmid_reference_1269-10407	5748	.	g	t	11	q30	DP=10378;AC=49;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	5749	.	g	t	7	q30	DP=10539;AC=46;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	5750	.	a	c	2	q30	DP=10511;AC=40;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	5756	.	t	g	7	q30	DP=10842;AC=48;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	5757	.	c	a	1	q30	DP=10855;AC=37;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	5760	.	t	g	2	q30	DP=10827;AC=41;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	5761	.	g	t	33	PASS	DP=10934;AC=65;AF=0.0059
SIVmac239M5SpXplasmid_reference_1269-10407	5762	.	c	a	4	q30	DP=10934;AC=44;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	5763	.	c	a	4	q30	DP=11038;AC=45;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	5766	.	c	a	2	q30	DP=11268;AC=41;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	5767	.	c	a	1	q30	DP=11278;AC=41;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	5770	.	a	c	16	q30	DP=11746;AC=59;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	5772	.	a	c	1	q30	DP=11662;AC=40;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	5778	.	g	t	6	q30	DP=11634;AC=50;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	5783	.	t	g	2	q30	DP=12568;AC=48;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	5785	.	c	a	11	q30	DP=12518;AC=58;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	5792	.	g	t	9	q30	DP=12135;AC=55;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	5794	.	c	a	24	q30	DP=12441;AC=67;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	5795	.	c	a	100	PASS	DP=12537;AC=107;AF=0.0085
SIVmac239M5SpXplasmid_reference_1269-10407	5796	.	c	a	26	q30	DP=12511;AC=69;AF=0.0055
SIVmac239M5SpXplasmid_reference_1269-10407	5800	.	a	c	1	q30	DP=12922;AC=47;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	5804	.	t	g	2	q30	DP=12816;AC=48;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	5806	.	c	a	1	q30	DP=12896;AC=47;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	5808	.	g	t	2	q30	DP=12858;AC=49;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	5809	.	a	c	9	q30	DP=12689;AC=57;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	5811	.	a	c	1	q30	DP=12638;AC=43;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	5813	.	c	a	4	q30	DP=12804;AC=51;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	5814	.	t	g	8	q30	DP=12749;AC=56;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	5817	.	g	t	18	q30	DP=12717;AC=65;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	5821	.	c	a	8	q30	DP=12772;AC=57;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	5822	.	c	a	6	q30	DP=12808;AC=55;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	5824	.	g	t	2	q30	DP=12872;AC=49;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	5826	.	a	c	8	q30	DP=13810;AC=61;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	5826	.	a	t	5	q30	DP=13810;AC=57;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	5827	.	a	c	1	q30	DP=13927;AC=49;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	5833	.	c	a	3	q30	DP=14180;AC=55;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	5837	.	c	a	10	q30	DP=13868;AC=63;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	5838	.	a	c	2	q30	DP=13849;AC=52;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	5839	.	c	a	1	q30	DP=13877;AC=49;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	5844	.	c	a	2	q30	DP=13795;AC=52;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	5846	.	g	t	12	q30	DP=13967;AC=65;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	5847	.	g	t	1	q30	DP=14177;AC=50;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	5848	.	c	a	6	q30	DP=14184;AC=60;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	5855	.	g	t	11	q30	DP=13927;AC=64;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	5856	.	g	t	2	q30	DP=13792;AC=52;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	5864	.	g	t	2	q30	DP=13680;AC=52;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	5868	.	c	a	1	q30	DP=13814;AC=48;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	5870	.	c	a	9	q30	DP=14026;AC=63;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	5872	.	t	g	1	q30	DP=14003;AC=50;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	5874	.	g	t	2	q30	DP=13930;AC=53;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	5878	.	c	a	3	q30	DP=13864;AC=53;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	5879	.	c	a	37	PASS	DP=13708;AC=80;AF=0.0058
SIVmac239M5SpXplasmid_reference_1269-10407	5880	.	t	g	2	q30	DP=13668;AC=50;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	5881	.	c	a	9	q30	DP=14327;AC=64;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	5884	.	t	g	3	q30	DP=14513;AC=56;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	5889	.	c	a	18	q30	DP=14361;AC=72;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	5890	.	c	a	8	q30	DP=14050;AC=62;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	5891	.	t	g	1	q30	DP=13961;AC=48;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	5901	.	t	g	1	q30	DP=14586;AC=52;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	5905	.	c	a	8	q30	DP=14047;AC=62;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	5906	.	c	a	72	PASS	DP=14038;AC=97;AF=0.0069
SIVmac239M5SpXplasmid_reference_1269-10407	5907	.	c	a	48	PASS	DP=14477;AC=89;AF=0.0061
SIVmac239M5SpXplasmid_reference_1269-10407	5910	.	t	g	2	q30	DP=14663;AC=56;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	5911	.	t	g	3	q30	DP=14670;AC=57;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	5928	.	t	a	2	q30	DP=14327;AC=54;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	5930	.	c	a	21	q30	DP=14598;AC=75;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	5939	.	t	a	1	q30	DP=14373;AC=49;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	5948	.	t	a	1	q30	DP=14694;AC=52;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	5948	.	t	g	5	q30	DP=14694;AC=60;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	5952	.	t	a	5	q30	DP=14648;AC=60;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	5953	.	g	t	6	q30	DP=14575;AC=61;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	5954	.	g	a	3	q30	DP=14469;AC=57;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	5954	.	g	t	2	q30	DP=14469;AC=54;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	5955	.	g	a	6	q30	DP=14271;AC=60;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	5955	.	g	t	32	PASS	DP=14271;AC=80;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	5958	.	t	a	2	q30	DP=14428;AC=53;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	5958	.	t	g	1	q30	DP=14428;AC=52;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	5967	.	t	a	8	q30	DP=14265;AC=63;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	5967	.	t	g	9	q30	DP=14265;AC=64;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	5968	.	c	a	5	q30	DP=14233;AC=58;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	5971	.	t	g	5	q30	DP=14236;AC=59;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	5977	.	c	a	3	q30	DP=14149;AC=55;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	5985	.	t	a	22	q30	DP=13583;AC=71;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	5985	.	t	g	20	q30	DP=13583;AC=70;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	5986	.	c	a	4	q30	DP=13504;AC=55;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	5989	.	c	a	2	q30	DP=13555;AC=50;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	5994	.	t	a	15	q30	DP=13501;AC=66;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	5994	.	t	g	31	PASS	DP=13501;AC=76;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	5995	.	c	a	6	q30	DP=13364;AC=57;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	5998	.	c	a	1	q30	DP=13304;AC=46;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	5999	.	g	t	18	q30	DP=13313;AC=67;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	6001	.	c	a	21	q30	DP=13246;AC=69;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	6004	.	c	a	5	q30	DP=12960;AC=54;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	6006	.	t	a	2	q30	DP=12923;AC=48;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	6006	.	t	g	36	PASS	DP=12923;AC=76;AF=0.0059
SIVmac239M5SpXplasmid_reference_1269-10407	6007	.	c	a	20	q30	DP=12910;AC=67;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	6010	.	c	a	42	PASS	DP=12974;AC=79;AF=0.0061
SIVmac239M5SpXplasmid_reference_1269-10407	6016	.	t	g	5	q30	DP=13149;AC=54;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	6018	.	g	t	5	q30	DP=13123;AC=55;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	6022	.	t	g	3	q30	DP=12864;AC=50;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	6023	.	g	t	8	q30	DP=12759;AC=57;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	6025	.	t	a	11	q30	DP=13168;AC=61;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	6025	.	t	g	40	PASS	DP=13168;AC=79;AF=0.0060
SIVmac239M5SpXplasmid_reference_1269-10407	6026	.	c	a	65	PASS	DP=13202;AC=90;AF=0.0068
SIVmac239M5SpXplasmid_reference_1269-10407	6027	.	c	a	44	PASS	DP=13207;AC=81;AF=0.0061
SIVmac239M5SpXplasmid_reference_1269-10407	6031	.	a	c	1	q30	DP=13297;AC=48;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	6032	.	g	a	4	q30	DP=13335;AC=54;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	6034	.	c	a	14	q30	DP=12491;AC=61;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	6038	.	t	g	2	q30	DP=12923;AC=49;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	6039	.	t	a	7	q30	DP=12912;AC=56;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	6039	.	t	g	3	q30	DP=12912;AC=50;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	6040	.	c	a	100	PASS	DP=12919;AC=107;AF=0.0083
SIVmac239M5SpXplasmid_reference_1269-10407	6041	.	t	a	4	q30	DP=12796;AC=52;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	6041	.	t	g	4	q30	DP=12796;AC=51;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	6043	.	g	t	1	q30	DP=13080;AC=46;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	6048	.	g	t	1	q30	DP=12272;AC=44;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	6049	.	c	a	19	q30	DP=12210;AC=63;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	6050	.	c	a	100	PASS	DP=12103;AC=116;AF=0.0096
SIVmac239M5SpXplasmid_reference_1269-10407	6050	.	c	t	1	q30	DP=12103;AC=43;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	6051	.	c	a	36	PASS	DP=12043;AC=72;AF=0.0060
SIVmac239M5SpXplasmid_reference_1269-10407	6053	.	g	a	3	q30	DP=11955;AC=47;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	6053	.	g	t	3	q30	DP=11955;AC=46;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	6054	.	g	t	2	q30	DP=12109;AC=46;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	6056	.	t	a	92	PASS	DP=12207;AC=94;AF=0.0077
SIVmac239M5SpXplasmid_reference_1269-10407	6056	.	t	g	10	q30	DP=12207;AC=56;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	6057	.	c	a	100	PASS	DP=11683;AC=113;AF=0.0097
SIVmac239M5SpXplasmid_reference_1269-10407	6060	.	t	a	5	q30	DP=11753;AC=49;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	6060	.	t	g	1	q30	DP=11753;AC=41;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	6062	.	c	a	29	q30	DP=11727;AC=67;AF=0.0057
SIVmac239M5SpXplasmid_reference_1269-10407	6064	.	c	a	34	PASS	DP=11627;AC=69;AF=0.0059
SIVmac239M5SpXplasmid_reference_1269-10407	6068	.	c	a	28	q30	DP=12757;AC=71;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	6069	.	t	a	11	q30	DP=12816;AC=60;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	6069	.	t	g	100	PASS	DP=12816;AC=102;AF=0.0080
SIVmac239M5SpXplasmid_reference_1269-10407	6070	.	t	g	4	q30	DP=12775;AC=52;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	6072	.	g	a	1	q30	DP=13121;AC=45;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	6072	.	g	t	1	q30	DP=13121;AC=46;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	6075	.	c	a	44	PASS	DP=12922;AC=80;AF=0.0062
SIVmac239M5SpXplasmid_reference_1269-10407	6081	.	c	a	27	q30	DP=12871;AC=71;AF=0.0055
SIVmac239M5SpXplasmid_reference_1269-10407	6085	.	t	a	43	PASS	DP=13248;AC=81;AF=0.0061
SIVmac239M5SpXplasmid_reference_1269-10407	6085	.	t	g	1	q30	DP=13248;AC=45;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	6088	.	t	a	3	q30	DP=13368;AC=52;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	6088	.	t	g	4	q30	DP=13368;AC=54;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	6092	.	c	a	10	q30	DP=13772;AC=63;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	6093	.	t	g	1	q30	DP=13540;AC=47;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	6095	.	t	g	1	q30	DP=13618;AC=49;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	6099	.	t	a	3	q30	DP=13840;AC=53;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	6099	.	t	g	33	PASS	DP=13840;AC=79;AF=0.0057
SIVmac239M5SpXplasmid_reference_1269-10407	6100	.	t	a	3	q30	DP=13663;AC=53;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	6100	.	t	g	5	q30	DP=13663;AC=56;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	6101	.	c	a	100	PASS	DP=13849;AC=120;AF=0.0087
SIVmac239M5SpXplasmid_reference_1269-10407	6106	.	t	g	1	q30	DP=14219;AC=50;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	6107	.	g	t	3	q30	DP=14015;AC=55;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	6109	.	c	a	18	q30	DP=14001;AC=70;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	6111	.	g	t	2	q30	DP=14114;AC=52;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	6112	.	g	a	10	q30	DP=13980;AC=64;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	6112	.	g	t	18	q30	DP=13980;AC=70;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	6122	.	a	g	3	q30	DP=13558;AC=53;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	6125	.	c	a	30	PASS	DP=13641;AC=76;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	6138	.	t	g	1	q30	DP=13717;AC=50;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	6140	.	c	a	15	q30	DP=13795;AC=67;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	6141	.	c	a	18	q30	DP=13775;AC=69;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	6143	.	g	a	1	q30	DP=13844;AC=50;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	6146	.	a	t	2	q30	DP=13688;AC=51;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	6147	.	a	t	1	q30	DP=14416;AC=51;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	6149	.	t	a	5	q30	DP=14430;AC=60;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	6149	.	t	g	34	PASS	DP=14430;AC=82;AF=0.0057
SIVmac239M5SpXplasmid_reference_1269-10407	6150	.	t	g	38	PASS	DP=14418;AC=84;AF=0.0058
SIVmac239M5SpXplasmid_reference_1269-10407	6151	.	g	t	3	q30	DP=14422;AC=57;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	6156	.	t	g	6	q30	DP=13866;AC=59;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	6157	.	c	a	8	q30	DP=14189;AC=62;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	6164	.	t	a	1	q30	DP=14614;AC=50;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	6164	.	t	g	10	q30	DP=14614;AC=66;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	6165	.	t	g	49	PASS	DP=14590;AC=90;AF=0.0062
SIVmac239M5SpXplasmid_reference_1269-10407	6167	.	g	t	4	q30	DP=14326;AC=57;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	6177	.	c	a	2	q30	DP=14633;AC=54;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	6180	.	g	t	2	q30	DP=14691;AC=56;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	6181	.	g	a	1	q30	DP=14782;AC=52;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	6181	.	g	t	8	q30	DP=14782;AC=65;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	6182	.	g	t	2	q30	DP=15309;AC=56;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	6215	.	g	t	2	q30	DP=14753;AC=54;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	6219	.	c	a	11	q30	DP=14813;AC=68;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	6240	.	c	a	28	q30	DP=14072;AC=77;AF=0.0055
SIVmac239M5SpXplasmid_reference_1269-10407	6245	.	g	t	2	q30	DP=13889;AC=53;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	6252	.	g	t	1	q30	DP=13678;AC=49;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	6265	.	g	t	7	q30	DP=13975;AC=60;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	6266	.	g	t	42	PASS	DP=13343;AC=81;AF=0.0061
SIVmac239M5SpXplasmid_reference_1269-10407	6267	.	g	t	6	q30	DP=13023;AC=55;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	6279	.	t	g	2	q30	DP=13942;AC=51;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	6280	.	t	g	16	q30	DP=12724;AC=63;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	6283	.	g	t	4	q30	DP=12721;AC=51;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	6284	.	g	t	2	q30	DP=12778;AC=47;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	6287	.	t	g	2	q30	DP=12337;AC=45;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	6291	.	g	t	16	q30	DP=12212;AC=61;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	6295	.	c	a	6	q30	DP=12126;AC=52;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	6296	.	t	g	4	q30	DP=12097;AC=49;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	6300	.	g	t	6	q30	DP=12074;AC=52;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	6301	.	g	t	9	q30	DP=12088;AC=55;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	6308	.	t	g	1	q30	DP=11354;AC=39;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	6309	.	t	g	1	q30	DP=11337;AC=41;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	6320	.	t	g	8	q30	DP=11203;AC=50;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	6324	.	g	t	8	q30	DP=11236;AC=50;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	6328	.	c	a	1	q30	DP=11310;AC=39;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	6330	.	c	a	5	q30	DP=11342;AC=47;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	6335	.	t	g	2	q30	DP=11587;AC=43;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	6336	.	t	g	1	q30	DP=11443;AC=39;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	6339	.	g	t	1	q30	DP=11033;AC=39;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	6340	.	g	t	1	q30	DP=11021;AC=38;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	6341	.	c	a	1	q30	DP=10963;AC=38;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	6342	.	t	g	4	q30	DP=10811;AC=44;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	6343	.	t	g	8	q30	DP=10610;AC=48;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	6344	.	t	g	1	q30	DP=10591;AC=37;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	6348	.	c	a	1	q30	DP=10522;AC=37;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	6352	.	a	c	3	q30	DP=10378;AC=41;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	6353	.	a	c	3	q30	DP=10387;AC=41;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	6366	.	g	t	1	q30	DP=9409;AC=32;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	6368	.	g	t	3	q30	DP=9367;AC=36;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	6371	.	c	a	5	q30	DP=9333;AC=39;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	6373	.	c	a	6	q30	DP=9331;AC=40;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	6374	.	t	g	4	q30	DP=9286;AC=38;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	6375	.	t	g	4	q30	DP=9277;AC=38;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	6380	.	c	a	5	q30	DP=9128;AC=39;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	6397	.	c	a	1	q30	DP=8331;AC=30;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	6406	.	c	a	2	q30	DP=8201;AC=31;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	6413	.	g	t	3	q30	DP=7655;AC=30;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	6417	.	g	t	1	q30	DP=7498;AC=25;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	6462	.	c	a	6	q30	DP=5068;AC=23;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	6463	.	a	c	1	q30	DP=5053;AC=18;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	6488	.	t	c	2	q30;ac5	DP=1141;AC=4;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	6490	.	g	t	1	q30;ac5	DP=872;AC=3;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	6491	.	t	a	4	q30;ac5	DP=815;AC=4;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	6491	.	t	g	2	q30;ac5	DP=815;AC=3;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	6492	.	t	c	1	q30;ac5	DP=762;AC=2;AF=0.0026
SIVmac239M5SpXplasmid_reference_1269-10407	6492	.	t	g	1	q30;ac5	DP=762;AC=2;AF=0.0026
SIVmac239M5SpXplasmid_reference_1269-10407	6493	.	t	a	1	q30;ac5	DP=736;AC=2;AF=0.0027
SIVmac239M5SpXplasmid_reference_1269-10407	6496	.	a	c	1	q30;ac5	DP=736;AC=2;AF=0.0027
SIVmac239M5SpXplasmid_reference_1269-10407	6497	.	t	g	11	q30	DP=745;AC=6;AF=0.0081
SIVmac239M5SpXplasmid_reference_1269-10407	6500	.	g	t	2	q30;ac5	DP=1018;AC=4;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	6503	.	t	a	1	q30;ac5	DP=1178;AC=4;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	6508	.	a	c	1	q30;ac5	DP=1385;AC=4;AF=0.0029
SIVmac239M5SpXplasmid_reference_1269-10407	6509	.	t	a	1	q30;ac5	DP=1354;AC=4;AF=0.0030
SIVmac239M5SpXplasmid_reference_1269-10407	6509	.	t	g	1	q30;ac5	DP=1354;AC=4;AF=0.0030
SIVmac239M5SpXplasmid_reference_1269-10407	6511	.	t	c	1	q30;ac5	DP=1436;AC=4;AF=0.0028
SIVmac239M5SpXplasmid_reference_1269-10407	6511	.	t	g	1	q30	DP=1436;AC=5;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	6517	.	t	a	1	q30	DP=1617;AC=5;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	6517	.	t	g	1	q30	DP=1617;AC=5;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	6518	.	g	t	1	q30	DP=1747;AC=6;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	6526	.	g	t	2	q30	DP=2234;AC=8;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	6529	.	g	t	1	q30	DP=2274;AC=8;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	6530	.	a	g	2	q30	DP=2268;AC=8;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	6531	.	c	a	4	q30	DP=2303;AC=10;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	6531	.	c	t	1	q30	DP=2303;AC=8;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	6532	.	c	t	5	q30	DP=2292;AC=11;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	6535	.	g	t	2	q30	DP=2396;AC=9;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	6542	.	g	t	1	q30	DP=2636;AC=8;AF=0.0030
SIVmac239M5SpXplasmid_reference_1269-10407	6549	.	t	a	1	q30	DP=2937;AC=9;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	6550	.	t	g	4	q30	DP=2944;AC=13;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	6555	.	g	t	1	q30	DP=3002;AC=10;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	6556	.	t	a	3	q30	DP=3004;AC=12;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	6557	.	c	a	2	q30	DP=3009;AC=11;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	6562	.	t	g	1	q30	DP=3366;AC=11;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	6563	.	t	g	1	q30	DP=3364;AC=11;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	6567	.	t	a	2	q30	DP=3416;AC=13;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	6570	.	g	t	2	q30	DP=3387;AC=13;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	6572	.	a	t	1	q30	DP=3399;AC=11;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	6575	.	g	t	1	q30	DP=3401;AC=11;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	6579	.	t	g	11	q30	DP=3454;AC=19;AF=0.0055
SIVmac239M5SpXplasmid_reference_1269-10407	6582	.	c	a	1	q30	DP=3468;AC=11;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	6586	.	c	a	5	q30	DP=3621;AC=16;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	6591	.	c	a	4	q30	DP=3721;AC=16;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	6592	.	c	a	1	q30	DP=3709;AC=13;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	6595	.	t	g	7	q30	DP=3999;AC=19;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	6596	.	c	a	29	q30	DP=4027;AC=29;AF=0.0072
SIVmac239M5SpXplasmid_reference_1269-10407	6599	.	t	a	1	q30	DP=4103;AC=13;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	6600	.	g	t	1	q30	DP=4106;AC=13;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	6602	.	t	g	8	q30	DP=4087;AC=20;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	6605	.	g	a	1	q30	DP=3999;AC=14;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	6606	.	c	a	26	q30	DP=3998;AC=28;AF=0.0070
SIVmac239M5SpXplasmid_reference_1269-10407	6607	.	c	a	50	PASS	DP=3984;AC=35;AF=0.0088
SIVmac239M5SpXplasmid_reference_1269-10407	6610	.	a	c	1	q30	DP=4006;AC=14;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	6612	.	c	a	2	q30	DP=4014;AC=15;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	6618	.	t	g	1	q30	DP=4010;AC=14;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	6619	.	g	t	8	q30	DP=4036;AC=20;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	6621	.	t	a	1	q30	DP=4393;AC=14;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	6623	.	t	c	3	q30	DP=4384;AC=18;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	6623	.	t	g	7	q30	DP=4384;AC=21;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	6627	.	t	a	4	q30	DP=4565;AC=19;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	6627	.	t	g	3	q30	DP=4565;AC=18;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	6628	.	t	c	1	q30	DP=4560;AC=16;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	6628	.	t	g	1	q30	DP=4560;AC=15;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	6637	.	a	c	1	q30	DP=5101;AC=17;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	6647	.	t	g	5	q30	DP=5478;AC=24;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	6658	.	a	c	1	q30	DP=6424;AC=22;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	6661	.	t	g	4	q30	DP=6536;AC=27;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	6665	.	g	t	5	q30	DP=6848;AC=29;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	6666	.	c	a	1	q30	DP=6839;AC=24;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	6670	.	c	a	30	PASS	DP=7042;AC=45;AF=0.0064
SIVmac239M5SpXplasmid_reference_1269-10407	6671	.	c	a	7	q30	DP=7038;AC=32;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	6683	.	t	g	41	PASS	DP=8227;AC=55;AF=0.0067
SIVmac239M5SpXplasmid_reference_1269-10407	6684	.	c	a	2	q30	DP=8315;AC=31;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	6685	.	c	a	25	q30	DP=8338;AC=49;AF=0.0059
SIVmac239M5SpXplasmid_reference_1269-10407	6686	.	c	a	5	q30	DP=8563;AC=36;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	6690	.	t	g	10	q30	DP=9359;AC=44;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	6692	.	t	g	4	q30	DP=9596;AC=39;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	6697	.	g	t	1	q30	DP=9984;AC=36;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	6707	.	t	g	6	q30	DP=11234;AC=48;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	6718	.	t	g	9	q30	DP=10871;AC=50;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	6722	.	t	g	71	PASS	DP=10878;AC=80;AF=0.0074
SIVmac239M5SpXplasmid_reference_1269-10407	6723	.	t	g	33	PASS	DP=10900;AC=65;AF=0.0060
SIVmac239M5SpXplasmid_reference_1269-10407	6724	.	t	g	3	q30	DP=10893;AC=43;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	6730	.	c	a	4	q30	DP=11048;AC=45;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	6731	.	t	c	1	q30	DP=11182;AC=38;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	6731	.	t	g	7	q30	DP=11182;AC=49;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	6732	.	c	a	16	q30	DP=11241;AC=57;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	6733	.	c	a	4	q30	DP=11274;AC=45;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	6747	.	c	a	23	q30	DP=11435;AC=62;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	6748	.	c	a	4	q30	DP=11411;AC=46;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	6749	.	g	t	4	q30	DP=11431;AC=46;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	6750	.	g	t	5	q30	DP=11573;AC=48;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	6757	.	c	a	8	q30	DP=12014;AC=53;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	6758	.	c	a	14	q30	DP=12046;AC=59;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	6759	.	t	a	1	q30	DP=11952;AC=41;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	6759	.	t	g	11	q30	DP=11952;AC=56;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	6766	.	g	t	20	q30	DP=12028;AC=63;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	6773	.	t	g	5	q30	DP=12498;AC=52;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	6780	.	g	t	2	q30	DP=13142;AC=48;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	6787	.	t	a	11	q30	DP=14177;AC=65;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	6788	.	c	a	6	q30	DP=14371;AC=60;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	6789	.	c	a	4	q30	DP=14338;AC=57;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	6790	.	t	g	1	q30	DP=14306;AC=49;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	6791	.	c	a	1	q30	DP=14574;AC=52;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	6800	.	a	c	2	q30	DP=14298;AC=54;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	6806	.	t	g	21	q30	DP=14121;AC=73;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	6808	.	g	t	3	q30	DP=14182;AC=56;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	6813	.	c	a	3	q30	DP=14366;AC=55;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	6816	.	a	c	3	q30	DP=14481;AC=56;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	6817	.	a	c	4	q30	DP=14429;AC=58;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	6820	.	g	t	16	q30	DP=14558;AC=71;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	6845	.	c	a	1	q30	DP=14392;AC=50;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	6846	.	c	a	13	q30	DP=14369;AC=68;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	6852	.	c	a	4	q30	DP=13910;AC=56;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	6853	.	c	a	29	q30	DP=13928;AC=77;AF=0.0055
SIVmac239M5SpXplasmid_reference_1269-10407	6881	.	g	t	5	q30	DP=12274;AC=51;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	6882	.	c	a	2	q30	DP=12291;AC=47;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	6883	.	c	a	18	q30	DP=12101;AC=62;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	6901	.	t	g	1	q30	DP=10265;AC=35;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	6904	.	t	g	5	q30	DP=10343;AC=43;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	6905	.	c	a	6	q30	DP=10342;AC=45;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	6911	.	t	a	2	q30	DP=9542;AC=36;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	6911	.	t	g	100	PASS	DP=9542;AC=93;AF=0.0097
SIVmac239M5SpXplasmid_reference_1269-10407	6912	.	t	g	20	q30	DP=9540;AC=52;AF=0.0055
SIVmac239M5SpXplasmid_reference_1269-10407	6913	.	g	t	11	q30	DP=9674;AC=46;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	6924	.	g	t	1	q30	DP=9180;AC=31;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	6930	.	a	c	3	q30	DP=9127;AC=35;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	6934	.	t	g	4	q30	DP=9164;AC=38;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	6935	.	t	g	1	q30	DP=9153;AC=33;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	6936	.	t	g	1	q30	DP=9151;AC=32;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	6938	.	t	g	14	q30	DP=9147;AC=46;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	6941	.	g	t	5	q30	DP=9112;AC=38;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	6942	.	c	a	24	q30	DP=9128;AC=52;AF=0.0057
SIVmac239M5SpXplasmid_reference_1269-10407	6943	.	c	a	21	q30	DP=9233;AC=51;AF=0.0055
SIVmac239M5SpXplasmid_reference_1269-10407	6944	.	t	a	1	q30	DP=9220;AC=32;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	6944	.	t	g	2	q30	DP=9220;AC=34;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	6945	.	c	a	1	q30	DP=9221;AC=33;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	6946	.	c	a	1	q30	DP=9241;AC=33;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	6949	.	g	t	4	q30	DP=9393;AC=38;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	6953	.	g	t	40	PASS	DP=8881;AC=58;AF=0.0065
SIVmac239M5SpXplasmid_reference_1269-10407	6954	.	g	t	25	q30	DP=8846;AC=51;AF=0.0058
SIVmac239M5SpXplasmid_reference_1269-10407	6955	.	g	t	29	q30	DP=8801;AC=53;AF=0.0060
SIVmac239M5SpXplasmid_reference_1269-10407	6957	.	g	t	11	q30	DP=8665;AC=42;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	6959	.	c	a	14	q30	DP=8649;AC=44;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	6960	.	c	a	12	q30	DP=8558;AC=42;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	6961	.	t	g	7	q30	DP=8517;AC=38;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	6962	.	c	a	15	q30	DP=8513;AC=44;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	6971	.	c	a	1	q30	DP=9017;AC=32;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	6972	.	t	a	4	q30	DP=8986;AC=36;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	6972	.	t	g	25	q30	DP=8986;AC=52;AF=0.0058
SIVmac239M5SpXplasmid_reference_1269-10407	6973	.	c	a	32	PASS	DP=8953;AC=55;AF=0.0061
SIVmac239M5SpXplasmid_reference_1269-10407	6974	.	c	a	38	PASS	DP=8795;AC=57;AF=0.0065
SIVmac239M5SpXplasmid_reference_1269-10407	6976	.	c	a	3	q30	DP=8830;AC=34;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	6979	.	t	a	1	q30	DP=8517;AC=30;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	6980	.	g	t	3	q30	DP=8591;AC=34;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	6982	.	c	a	10	q30	DP=8565;AC=41;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	6983	.	c	a	18	q30	DP=8512;AC=46;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	6985	.	g	t	4	q30	DP=8899;AC=36;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	6987	.	c	a	2	q30	DP=8899;AC=34;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	6988	.	t	g	2	q30	DP=8852;AC=33;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	7000	.	t	g	7	q30	DP=8700;AC=39;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	7003	.	a	c	3	q30	DP=8659;AC=34;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	7004	.	t	a	1	q30	DP=8654;AC=31;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	7004	.	t	g	19	q30	DP=8654;AC=47;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	7006	.	g	t	2	q30	DP=8532;AC=31;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	7009	.	t	a	1	q30	DP=8485;AC=29;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	7014	.	g	t	3	q30	DP=8396;AC=33;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	7015	.	g	t	6	q30	DP=8321;AC=36;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	7019	.	c	a	5	q30	DP=8392;AC=35;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	7020	.	c	a	7	q30	DP=8272;AC=37;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	7022	.	a	c	3	q30	DP=8257;AC=33;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	7024	.	c	a	2	q30	DP=8320;AC=31;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	7025	.	t	g	1	q30	DP=8235;AC=28;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	7030	.	t	g	2	q30	DP=8136;AC=31;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	7031	.	c	a	7	q30	DP=8144;AC=37;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	7033	.	c	a	1	q30	DP=7973;AC=28;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	7034	.	c	a	14	q30	DP=7908;AC=41;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	7036	.	t	g	2	q30	DP=7775;AC=29;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	7037	.	g	t	1	q30	DP=7815;AC=27;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	7041	.	g	t	1	q30	DP=7547;AC=26;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	7045	.	a	c	2	q30	DP=7376;AC=28;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	7046	.	g	t	12	q30	DP=7375;AC=37;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	7049	.	g	t	2	q30	DP=7131;AC=26;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	7051	.	c	a	35	PASS	DP=7118;AC=47;AF=0.0066
SIVmac239M5SpXplasmid_reference_1269-10407	7054	.	a	c	2	q30	DP=7185;AC=26;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	7061	.	t	a	3	q30	DP=7067;AC=28;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	7064	.	a	c	5	q30	DP=6634;AC=28;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	7065	.	t	a	1	q30	DP=6625;AC=23;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	7065	.	t	g	4	q30	DP=6625;AC=27;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	7067	.	g	t	1	q30	DP=6550;AC=23;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	7068	.	g	t	1	q30	DP=6631;AC=22;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	7071	.	t	g	2	q30	DP=6619;AC=25;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	7073	.	g	t	2	q30	DP=6490;AC=24;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	7074	.	g	a	2	q30	DP=6546;AC=25;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	7076	.	a	c	10	q30	DP=6488;AC=32;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	7076	.	a	t	1	q30	DP=6488;AC=22;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	7079	.	t	g	1	q30	DP=6472;AC=23;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	7080	.	t	g	4	q30	DP=6467;AC=27;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	7084	.	a	c	2	q30	DP=6515;AC=24;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	7086	.	t	g	2	q30	DP=6380;AC=23;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	7087	.	t	g	1	q30	DP=6331;AC=21;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	7090	.	t	g	3	q30	DP=6133;AC=24;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	7092	.	g	t	4	q30	DP=6111;AC=25;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	7094	.	g	t	1	q30	DP=5682;AC=19;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	7095	.	a	g	1	q30	DP=5615;AC=19;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	7096	.	t	g	1	q30	DP=5597;AC=18;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	7097	.	c	a	18	q30	DP=5521;AC=32;AF=0.0058
SIVmac239M5SpXplasmid_reference_1269-10407	7099	.	c	a	3	q30	DP=5326;AC=21;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	7100	.	t	g	9	q30	DP=5311;AC=26;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	7101	.	c	a	17	q30	DP=5346;AC=31;AF=0.0058
SIVmac239M5SpXplasmid_reference_1269-10407	7102	.	c	a	16	q30	DP=5270;AC=30;AF=0.0057
SIVmac239M5SpXplasmid_reference_1269-10407	7105	.	t	g	10	q30	DP=5161;AC=26;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	7106	.	t	g	5	q30	DP=5112;AC=22;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	7107	.	g	t	4	q30	DP=5094;AC=21;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	7108	.	g	t	1	q30	DP=4946;AC=17;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	7111	.	t	g	1	q30	DP=4765;AC=17;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	7112	.	g	t	21	q30	DP=4805;AC=30;AF=0.0062
SIVmac239M5SpXplasmid_reference_1269-10407	7113	.	g	t	6	q30	DP=4830;AC=22;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	7114	.	c	a	5	q30	DP=4802;AC=21;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	7115	.	c	a	40	PASS	DP=4835;AC=37;AF=0.0077
SIVmac239M5SpXplasmid_reference_1269-10407	7115	.	c	t	3	q30	DP=4835;AC=19;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	7116	.	c	a	75	PASS	DP=4776;AC=46;AF=0.0096
SIVmac239M5SpXplasmid_reference_1269-10407	7116	.	c	t	4	q30	DP=4776;AC=20;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	7117	.	c	a	54	PASS	DP=4813;AC=41;AF=0.0085
SIVmac239M5SpXplasmid_reference_1269-10407	7118	.	c	a	100	PASS	DP=4820;AC=55;AF=0.0114
SIVmac239M5SpXplasmid_reference_1269-10407	7120	.	c	a	1	q30	DP=4842;AC=16;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	7123	.	a	c	2	q30	DP=4881;AC=18;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	7123	.	a	t	1	q30	DP=4881;AC=16;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	7127	.	g	t	5	q30	DP=4827;AC=21;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	7129	.	a	t	1	q30	DP=4794;AC=17;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	7131	.	a	g	6	q30	DP=4624;AC=21;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	7131	.	a	t	5	q30	DP=4624;AC=20;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	7132	.	g	t	37	PASS	DP=4653;AC=35;AF=0.0075
SIVmac239M5SpXplasmid_reference_1269-10407	7133	.	g	t	12	q30	DP=4811;AC=26;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	7136	.	c	a	2	q30	DP=4824;AC=18;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	7137	.	a	g	3	q30	DP=4772;AC=19;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	7139	.	t	g	1	q30	DP=4843;AC=16;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	7141	.	c	a	1	q30	DP=4859;AC=17;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	7143	.	g	t	22	q30	DP=4527;AC=29;AF=0.0064
SIVmac239M5SpXplasmid_reference_1269-10407	7144	.	g	t	6	q30	DP=4501;AC=21;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	7146	.	g	t	20	q30	DP=4465;AC=28;AF=0.0063
SIVmac239M5SpXplasmid_reference_1269-10407	7147	.	g	t	2	q30	DP=4307;AC=16;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	7148	.	c	a	22	q30	DP=4306;AC=28;AF=0.0065
SIVmac239M5SpXplasmid_reference_1269-10407	7150	.	c	a	9	q30	DP=4277;AC=22;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	7151	.	c	a	28	q30	DP=4266;AC=30;AF=0.0070
SIVmac239M5SpXplasmid_reference_1269-10407	7152	.	t	c	8	q30	DP=4257;AC=21;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	7152	.	t	g	1	q30	DP=4257;AC=15;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	7153	.	c	a	18	q30	DP=4266;AC=26;AF=0.0061
SIVmac239M5SpXplasmid_reference_1269-10407	7153	.	c	t	1	q30	DP=4266;AC=14;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	7154	.	a	c	2	q30	DP=4273;AC=16;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	7154	.	a	t	1	q30	DP=4273;AC=14;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	7155	.	a	c	28	q30	DP=4274;AC=30;AF=0.0070
SIVmac239M5SpXplasmid_reference_1269-10407	7157	.	a	c	24	q30	DP=4376;AC=29;AF=0.0066
SIVmac239M5SpXplasmid_reference_1269-10407	7157	.	a	t	1	q30	DP=4376;AC=14;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	7158	.	a	c	29	q30	DP=4383;AC=31;AF=0.0071
SIVmac239M5SpXplasmid_reference_1269-10407	7158	.	a	g	1	q30	DP=4383;AC=14;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	7159	.	a	c	21	q30	DP=4402;AC=28;AF=0.0064
SIVmac239M5SpXplasmid_reference_1269-10407	7159	.	a	t	2	q30	DP=4402;AC=16;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	7160	.	t	g	52	PASS	DP=4416;AC=38;AF=0.0086
SIVmac239M5SpXplasmid_reference_1269-10407	7161	.	a	c	14	q30	DP=4406;AC=25;AF=0.0057
SIVmac239M5SpXplasmid_reference_1269-10407	7162	.	a	c	18	q30	DP=4421;AC=27;AF=0.0061
SIVmac239M5SpXplasmid_reference_1269-10407	7163	.	a	c	14	q30	DP=4415;AC=25;AF=0.0057
SIVmac239M5SpXplasmid_reference_1269-10407	7163	.	a	g	2	q30	DP=4415;AC=16;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	7164	.	a	c	31	PASS	DP=4432;AC=32;AF=0.0072
SIVmac239M5SpXplasmid_reference_1269-10407	7166	.	a	c	3	q30	DP=4260;AC=17;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	7166	.	a	g	3	q30	DP=4260;AC=17;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	7166	.	a	t	20	q30	DP=4260;AC=27;AF=0.0063
SIVmac239M5SpXplasmid_reference_1269-10407	7168	.	g	t	18	q30	DP=4214;AC=26;AF=0.0062
SIVmac239M5SpXplasmid_reference_1269-10407	7169	.	g	t	35	PASS	DP=4226;AC=32;AF=0.0076
SIVmac239M5SpXplasmid_reference_1269-10407	7170	.	g	t	13	q30	DP=4258;AC=24;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	7171	.	t	a	10	q30	DP=4234;AC=22;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	7171	.	t	g	2	q30	DP=4234;AC=16;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	7172	.	c	a	6	q30	DP=4269;AC=20;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	7172	.	c	t	1	q30	DP=4269;AC=14;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	7173	.	t	g	44	PASS	DP=4251;AC=35;AF=0.0082
SIVmac239M5SpXplasmid_reference_1269-10407	7174	.	t	a	1	q30	DP=4266;AC=14;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	7174	.	t	g	15	q30	DP=4266;AC=25;AF=0.0059
SIVmac239M5SpXplasmid_reference_1269-10407	7175	.	t	g	28	q30	DP=4261;AC=30;AF=0.0070
SIVmac239M5SpXplasmid_reference_1269-10407	7176	.	g	t	3	q30	DP=4459;AC=18;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	7177	.	t	g	5	q30	DP=4448;AC=20;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	7178	.	g	t	1	q30	DP=4448;AC=14;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	7179	.	c	a	2	q30	DP=4399;AC=16;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	7180	.	t	g	15	q30	DP=4337;AC=25;AF=0.0058
SIVmac239M5SpXplasmid_reference_1269-10407	7181	.	a	c	3	q30	DP=4311;AC=17;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	7181	.	a	g	1	q30	DP=4311;AC=14;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	7181	.	a	t	4	q30	DP=4311;AC=18;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	7182	.	g	t	8	q30	DP=4323;AC=21;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	7183	.	g	t	19	q30	DP=4365;AC=27;AF=0.0062
SIVmac239M5SpXplasmid_reference_1269-10407	7184	.	g	t	12	q30	DP=4411;AC=24;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	7185	.	t	a	4	q30	DP=4211;AC=18;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	7185	.	t	c	4	q30	DP=4211;AC=18;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	7185	.	t	g	3	q30	DP=4211;AC=17;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	7186	.	t	a	1	q30	DP=4217;AC=14;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	7186	.	t	g	23	q30	DP=4217;AC=28;AF=0.0066
SIVmac239M5SpXplasmid_reference_1269-10407	7187	.	c	a	2	q30	DP=4217;AC=16;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	7188	.	t	g	14	q30	DP=4207;AC=24;AF=0.0057
SIVmac239M5SpXplasmid_reference_1269-10407	7189	.	t	g	18	q30	DP=4210;AC=26;AF=0.0062
SIVmac239M5SpXplasmid_reference_1269-10407	7191	.	g	t	2	q30	DP=4207;AC=16;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	7192	.	g	t	2	q30	DP=4198;AC=16;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	7193	.	t	a	5	q30	DP=4129;AC=18;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	7193	.	t	c	5	q30	DP=4129;AC=18;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	7193	.	t	g	13	q30	DP=4129;AC=23;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	7194	.	t	g	10	q30	DP=4155;AC=22;AF=0.0053
SIVmac239M5SpXplasmid_reference_1269-10407	7195	.	t	g	24	q30	DP=4151;AC=28;AF=0.0067
SIVmac239M5SpXplasmid_reference_1269-10407	7196	.	t	g	87	PASS	DP=4169;AC=45;AF=0.0108
SIVmac239M5SpXplasmid_reference_1269-10407	7198	.	t	a	2	q30	DP=4162;AC=15;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	7198	.	t	g	17	q30	DP=4162;AC=25;AF=0.0060
SIVmac239M5SpXplasmid_reference_1269-10407	7199	.	c	a	1	q30	DP=4164;AC=14;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	7201	.	c	a	4	q30	DP=4161;AC=18;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	7202	.	a	c	3	q30	DP=4155;AC=17;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	7202	.	a	t	1	q30	DP=4155;AC=14;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	7203	.	a	g	7	q30	DP=4182;AC=20;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	7205	.	g	t	14	q30	DP=4214;AC=24;AF=0.0057
SIVmac239M5SpXplasmid_reference_1269-10407	7206	.	g	t	1	q30	DP=4205;AC=14;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	7207	.	c	a	2	q30	DP=4206;AC=15;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	7208	.	a	c	2	q30	DP=4201;AC=16;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	7208	.	a	t	4	q30	DP=4201;AC=18;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	7211	.	t	a	9	q30	DP=4332;AC=22;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	7211	.	t	c	33	PASS	DP=4332;AC=32;AF=0.0074
SIVmac239M5SpXplasmid_reference_1269-10407	7211	.	t	g	22	q30	DP=4332;AC=28;AF=0.0065
SIVmac239M5SpXplasmid_reference_1269-10407	7212	.	t	g	9	q30	DP=4311;AC=22;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	7213	.	c	a	2	q30	DP=4334;AC=16;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	7214	.	t	g	15	q30	DP=4310;AC=25;AF=0.0058
SIVmac239M5SpXplasmid_reference_1269-10407	7215	.	g	t	1	q30	DP=4373;AC=14;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	7216	.	c	a	3	q30	DP=4366;AC=17;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	7219	.	t	g	9	q30	DP=4105;AC=21;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	7220	.	g	a	2	q30	DP=4129;AC=15;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	7220	.	g	t	13	q30	DP=4129;AC=23;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	7221	.	g	t	11	q30	DP=4116;AC=22;AF=0.0053
SIVmac239M5SpXplasmid_reference_1269-10407	7222	.	g	t	7	q30	DP=4147;AC=20;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	7223	.	c	a	6	q30	DP=4142;AC=19;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	7223	.	c	g	2	q30	DP=4142;AC=15;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	7225	.	c	a	3	q30	DP=4132;AC=17;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	7226	.	g	a	1	q30	DP=4125;AC=14;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	7226	.	g	t	1	q30	DP=4125;AC=14;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	7228	.	c	a	12	q30	DP=4138;AC=23;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	7230	.	t	a	3	q30	DP=4114;AC=16;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	7230	.	t	g	17	q30	DP=4114;AC=25;AF=0.0061
SIVmac239M5SpXplasmid_reference_1269-10407	7231	.	c	a	7	q30	DP=4120;AC=20;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	7233	.	t	g	2	q30	DP=4127;AC=16;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	7234	.	t	g	47	PASS	DP=4126;AC=35;AF=0.0085
SIVmac239M5SpXplasmid_reference_1269-10407	7236	.	a	g	1	q30	DP=4157;AC=13;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	7237	.	c	a	2	q30	DP=4142;AC=15;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	7239	.	c	a	3	q30	DP=4102;AC=16;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	7240	.	t	g	6	q30	DP=4063;AC=19;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	7241	.	g	a	1	q30	DP=4078;AC=13;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	7241	.	g	t	1	q30	DP=4078;AC=14;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	7242	.	a	c	1	q30	DP=4076;AC=14;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	7242	.	a	g	1	q30	DP=4076;AC=13;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	7243	.	c	a	9	q30	DP=4096;AC=21;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	7244	.	c	a	31	PASS	DP=4060;AC=30;AF=0.0074
SIVmac239M5SpXplasmid_reference_1269-10407	7244	.	c	t	2	q30	DP=4060;AC=15;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	7245	.	g	t	1	q30	DP=4080;AC=13;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	7246	.	c	a	8	q30	DP=4088;AC=20;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	7247	.	t	a	3	q30	DP=4084;AC=16;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	7247	.	t	c	31	PASS	DP=4084;AC=30;AF=0.0073
SIVmac239M5SpXplasmid_reference_1269-10407	7247	.	t	g	8	q30	DP=4084;AC=20;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	7248	.	c	a	17	q30	DP=4079;AC=25;AF=0.0061
SIVmac239M5SpXplasmid_reference_1269-10407	7249	.	a	c	11	q30	DP=4041;AC=22;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	7252	.	c	a	10	q30	DP=4217;AC=22;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	7252	.	c	g	1	q30	DP=4217;AC=14;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	7253	.	c	a	29	q30	DP=4194;AC=30;AF=0.0072
SIVmac239M5SpXplasmid_reference_1269-10407	7253	.	c	t	1	q30	DP=4194;AC=14;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	7254	.	c	a	6	q30	DP=4162;AC=19;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	7255	.	g	t	2	q30	DP=4164;AC=16;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	7256	.	a	c	96	PASS	DP=4325;AC=48;AF=0.0111
SIVmac239M5SpXplasmid_reference_1269-10407	7256	.	a	t	9	q30	DP=4325;AC=22;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	7257	.	a	c	6	q30	DP=4353;AC=20;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	7259	.	t	a	1	q30	DP=4323;AC=14;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	7259	.	t	g	43	PASS	DP=4323;AC=35;AF=0.0081
SIVmac239M5SpXplasmid_reference_1269-10407	7260	.	t	a	2	q30	DP=4368;AC=16;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	7260	.	t	g	64	PASS	DP=4368;AC=41;AF=0.0094
SIVmac239M5SpXplasmid_reference_1269-10407	7261	.	t	g	38	PASS	DP=4386;AC=34;AF=0.0078
SIVmac239M5SpXplasmid_reference_1269-10407	7262	.	a	c	29	q30	DP=4400;AC=31;AF=0.0070
SIVmac239M5SpXplasmid_reference_1269-10407	7263	.	t	g	42	PASS	DP=4399;AC=35;AF=0.0080
SIVmac239M5SpXplasmid_reference_1269-10407	7264	.	t	g	10	q30	DP=4387;AC=23;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	7267	.	c	a	4	q30	DP=4539;AC=19;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	7267	.	c	g	1	q30	DP=4539;AC=16;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	7268	.	t	a	5	q30	DP=4480;AC=20;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	7268	.	t	g	13	q30	DP=4480;AC=25;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	7269	.	g	t	20	q30	DP=4488;AC=28;AF=0.0062
SIVmac239M5SpXplasmid_reference_1269-10407	7270	.	g	a	5	q30	DP=4586;AC=20;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	7270	.	g	t	6	q30	DP=4586;AC=21;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	7271	.	g	t	5	q30	DP=4582;AC=20;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	7272	.	a	c	38	PASS	DP=4578;AC=35;AF=0.0076
SIVmac239M5SpXplasmid_reference_1269-10407	7272	.	a	g	4	q30	DP=4578;AC=19;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	7272	.	a	t	17	q30	DP=4578;AC=27;AF=0.0059
SIVmac239M5SpXplasmid_reference_1269-10407	7273	.	t	a	1	q30	DP=4565;AC=16;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	7273	.	t	g	38	PASS	DP=4565;AC=35;AF=0.0077
SIVmac239M5SpXplasmid_reference_1269-10407	7274	.	a	c	17	q30	DP=4336;AC=26;AF=0.0060
SIVmac239M5SpXplasmid_reference_1269-10407	7276	.	t	a	1	q30	DP=4511;AC=16;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	7276	.	t	g	53	PASS	DP=4511;AC=39;AF=0.0086
SIVmac239M5SpXplasmid_reference_1269-10407	7277	.	g	t	8	q30	DP=4514;AC=22;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	7278	.	c	a	27	q30	DP=4504;AC=31;AF=0.0069
SIVmac239M5SpXplasmid_reference_1269-10407	7279	.	a	g	1	q30	DP=4365;AC=14;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	7280	.	g	t	2	q30	DP=4398;AC=16;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	7281	.	c	a	3	q30	DP=4397;AC=18;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	7282	.	a	c	21	q30	DP=4399;AC=28;AF=0.0064
SIVmac239M5SpXplasmid_reference_1269-10407	7283	.	a	c	2	q30	DP=4390;AC=16;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	7285	.	a	c	7	q30	DP=4213;AC=20;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	7286	.	g	t	2	q30	DP=4258;AC=16;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	7287	.	c	a	8	q30	DP=4262;AC=21;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	7288	.	a	c	10	q30	DP=4250;AC=22;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	7290	.	c	a	2	q30	DP=4228;AC=16;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	7291	.	a	c	3	q30	DP=4235;AC=17;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	7293	.	c	a	3	q30	DP=4341;AC=17;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	7294	.	t	g	17	q30	DP=4331;AC=26;AF=0.0060
SIVmac239M5SpXplasmid_reference_1269-10407	7296	.	t	a	3	q30	DP=4352;AC=17;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	7296	.	t	c	3	q30	DP=4352;AC=17;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	7296	.	t	g	65	PASS	DP=4352;AC=41;AF=0.0094
SIVmac239M5SpXplasmid_reference_1269-10407	7297	.	t	g	1	q30	DP=4351;AC=14;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	7298	.	g	t	21	q30	DP=4360;AC=28;AF=0.0064
SIVmac239M5SpXplasmid_reference_1269-10407	7299	.	g	a	1	q30	DP=4339;AC=15;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	7299	.	g	t	2	q30	DP=4339;AC=16;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	7300	.	a	c	5	q30	DP=4339;AC=19;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	7301	.	c	a	44	PASS	DP=4270;AC=35;AF=0.0082
SIVmac239M5SpXplasmid_reference_1269-10407	7303	.	t	a	1	q30	DP=4205;AC=14;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	7303	.	t	g	12	q30	DP=4205;AC=23;AF=0.0055
SIVmac239M5SpXplasmid_reference_1269-10407	7304	.	g	a	11	q30	DP=4302;AC=23;AF=0.0053
SIVmac239M5SpXplasmid_reference_1269-10407	7304	.	g	t	17	q30	DP=4302;AC=26;AF=0.0060
SIVmac239M5SpXplasmid_reference_1269-10407	7305	.	g	a	1	q30	DP=4375;AC=14;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	7306	.	t	g	1	q30	DP=4375;AC=15;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	7307	.	c	a	61	PASS	DP=4366;AC=40;AF=0.0092
SIVmac239M5SpXplasmid_reference_1269-10407	7308	.	a	c	9	q30	DP=4358;AC=22;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	7309	.	a	c	6	q30	DP=4390;AC=20;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	7310	.	g	t	3	q30	DP=4391;AC=18;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	7311	.	a	g	1	q30	DP=4384;AC=15;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	7312	.	g	a	1	q30	DP=4369;AC=15;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	7312	.	g	t	3	q30	DP=4369;AC=17;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	7313	.	a	g	4	q30	DP=4266;AC=18;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	7314	.	c	a	1	q30	DP=4286;AC=15;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	7315	.	a	g	1	q30	DP=4279;AC=15;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	7318	.	a	c	5	q30	DP=4297;AC=19;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	7319	.	a	c	3	q30	DP=4290;AC=17;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	7319	.	a	g	1	q30	DP=4290;AC=15;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	7320	.	g	t	1	q30	DP=4334;AC=14;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	7321	.	a	c	15	q30	DP=4317;AC=25;AF=0.0058
SIVmac239M5SpXplasmid_reference_1269-10407	7321	.	a	g	6	q30	DP=4317;AC=20;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	7323	.	t	g	59	PASS	DP=4248;AC=39;AF=0.0092
SIVmac239M5SpXplasmid_reference_1269-10407	7324	.	t	a	1	q30	DP=4250;AC=15;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	7324	.	t	g	48	PASS	DP=4250;AC=36;AF=0.0085
SIVmac239M5SpXplasmid_reference_1269-10407	7326	.	t	g	14	q30	DP=4225;AC=24;AF=0.0057
SIVmac239M5SpXplasmid_reference_1269-10407	7327	.	t	a	1	q30	DP=4218;AC=14;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	7327	.	t	g	21	q30	DP=4218;AC=27;AF=0.0064
SIVmac239M5SpXplasmid_reference_1269-10407	7328	.	g	t	4	q30	DP=4240;AC=18;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	7329	.	c	a	1	q30	DP=4207;AC=14;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	7330	.	g	t	12	q30	DP=4188;AC=23;AF=0.0055
SIVmac239M5SpXplasmid_reference_1269-10407	7333	.	t	g	11	q30	DP=4096;AC=22;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	7335	.	a	g	3	q30	DP=4094;AC=16;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	7335	.	a	t	3	q30	DP=4094;AC=16;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	7336	.	c	a	5	q30	DP=4096;AC=18;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	7337	.	c	a	17	q30	DP=4084;AC=25;AF=0.0061
SIVmac239M5SpXplasmid_reference_1269-10407	7339	.	t	g	45	PASS	DP=4038;AC=34;AF=0.0084
SIVmac239M5SpXplasmid_reference_1269-10407	7340	.	c	a	26	q30	DP=4039;AC=28;AF=0.0069
SIVmac239M5SpXplasmid_reference_1269-10407	7340	.	c	g	1	q30	DP=4039;AC=14;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	7341	.	t	g	1	q30	DP=4036;AC=13;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	7342	.	g	t	1	q30	DP=4049;AC=13;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	7343	.	g	t	5	q30	DP=4040;AC=18;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	7344	.	g	t	12	q30	DP=4028;AC=22;AF=0.0055
SIVmac239M5SpXplasmid_reference_1269-10407	7345	.	g	t	8	q30	DP=4054;AC=20;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	7346	.	a	c	3	q30	DP=4016;AC=16;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	7346	.	a	g	10	q30	DP=4016;AC=21;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	7346	.	a	t	1	q30	DP=4016;AC=14;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	7348	.	c	a	2	q30	DP=4056;AC=15;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	7349	.	a	c	1	q30	DP=4055;AC=13;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	7350	.	a	c	1	q30	DP=4051;AC=13;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	7351	.	a	c	5	q30	DP=4022;AC=18;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	7353	.	a	g	1	q30	DP=4027;AC=13;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	7354	.	a	g	16	q30	DP=3996;AC=24;AF=0.0060
SIVmac239M5SpXplasmid_reference_1269-10407	7354	.	a	t	2	q30	DP=3996;AC=15;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	7355	.	c	a	5	q30	DP=4045;AC=18;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	7356	.	c	a	11	q30	DP=4108;AC=22;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	7357	.	t	a	4	q30	DP=4051;AC=17;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	7357	.	t	g	49	PASS	DP=4051;AC=35;AF=0.0086
SIVmac239M5SpXplasmid_reference_1269-10407	7358	.	c	a	23	q30	DP=4070;AC=27;AF=0.0066
SIVmac239M5SpXplasmid_reference_1269-10407	7359	.	c	a	3	q30	DP=4055;AC=16;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	7362	.	a	c	3	q30	DP=4323;AC=17;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	7363	.	c	a	2	q30	DP=4346;AC=16;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	7363	.	c	t	1	q30	DP=4346;AC=15;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	7364	.	t	g	5	q30	DP=4295;AC=19;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	7366	.	g	t	3	q30	DP=4257;AC=17;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	7367	.	g	t	1	q30	DP=4284;AC=15;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	7368	.	g	a	5	q30	DP=4278;AC=19;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	7369	.	t	g	3	q30	DP=4225;AC=17;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	7370	.	c	a	19	q30	DP=4138;AC=26;AF=0.0063
SIVmac239M5SpXplasmid_reference_1269-10407	7370	.	c	g	1	q30	DP=4138;AC=14;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	7371	.	a	c	3	q30	DP=4121;AC=16;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	7371	.	a	g	3	q30	DP=4121;AC=16;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	7372	.	c	a	5	q30	DP=4120;AC=18;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	7373	.	t	g	17	q30	DP=4118;AC=25;AF=0.0061
SIVmac239M5SpXplasmid_reference_1269-10407	7375	.	c	a	5	q30	DP=4134;AC=18;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	7376	.	c	a	15	q30	DP=4050;AC=24;AF=0.0059
SIVmac239M5SpXplasmid_reference_1269-10407	7378	.	t	a	13	q30	DP=4089;AC=23;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	7378	.	t	g	51	PASS	DP=4089;AC=36;AF=0.0088
SIVmac239M5SpXplasmid_reference_1269-10407	7379	.	c	a	3	q30	DP=4095;AC=16;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	7380	.	g	t	4	q30	DP=4114;AC=17;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	7381	.	a	c	9	q30	DP=4107;AC=21;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	7383	.	a	c	9	q30	DP=4080;AC=21;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	7385	.	g	t	2	q30	DP=4137;AC=15;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	7386	.	t	a	1	q30	DP=4103;AC=13;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	7386	.	t	g	7	q30	DP=4103;AC=20;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	7387	.	a	c	1	q30	DP=4208;AC=15;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	7389	.	t	a	3	q30	DP=4231;AC=17;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	7389	.	t	g	2	q30	DP=4231;AC=16;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	7390	.	t	a	1	q30	DP=4249;AC=14;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	7390	.	t	g	13	q30	DP=4249;AC=24;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	7395	.	g	t	3	q30	DP=4206;AC=17;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	7396	.	a	c	1	q30	DP=4137;AC=14;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	7397	.	c	a	3	q30	DP=4140;AC=17;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	7398	.	c	a	6	q30	DP=4123;AC=19;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	7400	.	g	t	1	q30	DP=4133;AC=13;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	7401	.	g	t	3	q30	DP=4144;AC=17;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	7402	.	c	a	24	q30	DP=4149;AC=28;AF=0.0067
SIVmac239M5SpXplasmid_reference_1269-10407	7404	.	c	a	7	q30	DP=4131;AC=20;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	7405	.	a	c	1	q30	DP=4117;AC=13;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	7408	.	t	g	3	q30	DP=4180;AC=17;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	7409	.	g	t	9	q30	DP=4181;AC=21;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	7411	.	a	c	1	q30	DP=4140;AC=14;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	7412	.	t	a	2	q30	DP=4151;AC=16;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	7412	.	t	g	2	q30	DP=4151;AC=16;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	7415	.	t	g	7	q30	DP=4159;AC=20;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	7416	.	t	g	2	q30	DP=4164;AC=16;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	7417	.	g	t	7	q30	DP=4171;AC=20;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	7418	.	g	t	10	q30	DP=4181;AC=22;AF=0.0053
SIVmac239M5SpXplasmid_reference_1269-10407	7419	.	g	t	2	q30	DP=4195;AC=15;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	7421	.	a	c	2	q30	DP=4184;AC=16;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	7422	.	t	g	1	q30	DP=4002;AC=14;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	7424	.	t	g	4	q30	DP=3984;AC=17;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	7425	.	g	t	2	q30	DP=4019;AC=15;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	7426	.	c	a	3	q30	DP=4063;AC=16;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	7428	.	t	g	2	q30	DP=4047;AC=15;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	7429	.	t	g	1	q30	DP=4074;AC=14;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	7434	.	c	a	13	q30	DP=4082;AC=23;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	7438	.	t	g	5	q30	DP=4039;AC=18;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	7439	.	c	a	8	q30	DP=4062;AC=20;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	7440	.	t	g	5	q30	DP=4042;AC=18;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	7441	.	g	t	2	q30	DP=4066;AC=15;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	7442	.	c	a	1	q30	DP=4162;AC=14;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	7445	.	c	a	2	q30	DP=4209;AC=16;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	7455	.	c	a	4	q30	DP=5049;AC=21;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	7461	.	c	a	3	q30	DP=4370;AC=17;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	7462	.	c	a	3	q30	DP=4341;AC=17;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	7465	.	a	c	4	q30	DP=4321;AC=18;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	7466	.	t	g	2	q30	DP=4572;AC=17;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	7468	.	c	a	4	q30	DP=4600;AC=19;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	7470	.	a	c	1	q30	DP=4588;AC=15;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	7472	.	t	g	22	q30	DP=4755;AC=30;AF=0.0063
SIVmac239M5SpXplasmid_reference_1269-10407	7473	.	c	a	4	q30	DP=4798;AC=20;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	7474	.	t	g	24	q30	DP=4793;AC=31;AF=0.0065
SIVmac239M5SpXplasmid_reference_1269-10407	7477	.	c	a	3	q30	DP=4922;AC=20;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	7479	.	c	a	13	q30	DP=4948;AC=27;AF=0.0055
SIVmac239M5SpXplasmid_reference_1269-10407	7480	.	c	a	12	q30	DP=4908;AC=26;AF=0.0053
SIVmac239M5SpXplasmid_reference_1269-10407	7482	.	a	c	1	q30	DP=5062;AC=18;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	7484	.	g	t	2	q30	DP=5156;AC=19;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	7485	.	t	c	1	q30	DP=5152;AC=17;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	7485	.	t	g	6	q30	DP=5152;AC=23;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	7486	.	g	t	6	q30	DP=5125;AC=23;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	7487	.	g	a	1	q30	DP=5159;AC=17;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	7487	.	g	t	1	q30	DP=5159;AC=17;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	7490	.	c	a	5	q30	DP=5309;AC=23;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	7493	.	t	g	2	q30	DP=5280;AC=19;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	7494	.	g	t	2	q30	DP=5279;AC=19;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	7495	.	a	g	8	q30	DP=5260;AC=25;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	7496	.	g	t	1	q30	DP=5310;AC=18;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	7497	.	a	g	5	q30	DP=5313;AC=23;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	7498	.	c	a	7	q30	DP=5326;AC=25;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	7499	.	t	a	1	q30	DP=5272;AC=18;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	7499	.	t	g	30	PASS	DP=5272;AC=36;AF=0.0068
SIVmac239M5SpXplasmid_reference_1269-10407	7503	.	c	a	7	q30	DP=5436;AC=25;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	7504	.	a	c	6	q30	DP=5403;AC=24;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	7507	.	a	c	4	q30	DP=5508;AC=23;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	7509	.	t	a	16	q30	DP=5483;AC=31;AF=0.0057
SIVmac239M5SpXplasmid_reference_1269-10407	7509	.	t	g	1	q30	DP=5483;AC=18;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	7510	.	g	t	5	q30	DP=5482;AC=24;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	7511	.	g	t	2	q30	DP=5483;AC=20;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	7512	.	g	a	2	q30	DP=5488;AC=20;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	7512	.	g	t	2	q30	DP=5488;AC=20;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	7515	.	c	a	4	q30	DP=5455;AC=23;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	7517	.	a	c	1	q30	DP=5448;AC=18;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	7519	.	a	c	5	q30	DP=5491;AC=24;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	7520	.	g	t	1	q30	DP=5501;AC=19;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	7522	.	t	g	1	q30	DP=5541;AC=19;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	7526	.	c	a	1	q30	DP=5570;AC=18;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	7527	.	t	g	5	q30	DP=5547;AC=24;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	7528	.	t	a	1	q30	DP=5568;AC=18;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	7528	.	t	g	10	q30	DP=5568;AC=28;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	7529	.	c	a	2	q30	DP=5562;AC=21;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	7530	.	t	a	6	q30	DP=5542;AC=25;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	7530	.	t	g	22	q30	DP=5542;AC=34;AF=0.0061
SIVmac239M5SpXplasmid_reference_1269-10407	7541	.	t	g	22	q30	DP=6141;AC=37;AF=0.0060
SIVmac239M5SpXplasmid_reference_1269-10407	7546	.	c	a	1	q30	DP=6190;AC=21;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	7549	.	c	a	35	PASS	DP=5938;AC=41;AF=0.0069
SIVmac239M5SpXplasmid_reference_1269-10407	7550	.	c	a	35	PASS	DP=5919;AC=41;AF=0.0069
SIVmac239M5SpXplasmid_reference_1269-10407	7551	.	c	a	30	PASS	DP=6307;AC=41;AF=0.0065
SIVmac239M5SpXplasmid_reference_1269-10407	7552	.	t	a	16	q30	DP=6617;AC=36;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	7552	.	t	g	18	q30	DP=6617;AC=37;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	7553	.	c	a	15	q30	DP=6888;AC=37;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	7554	.	c	a	13	q30	DP=6912;AC=36;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	7555	.	t	g	2	q30	DP=6900;AC=25;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	7563	.	g	t	2	q30	DP=6113;AC=23;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	7564	.	c	a	8	q30	DP=6126;AC=29;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	7570	.	t	g	24	q30	DP=6215;AC=38;AF=0.0061
SIVmac239M5SpXplasmid_reference_1269-10407	7571	.	t	a	4	q30	DP=6185;AC=26;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	7571	.	t	g	18	q30	DP=6185;AC=35;AF=0.0057
SIVmac239M5SpXplasmid_reference_1269-10407	7572	.	c	a	3	q30	DP=6215;AC=25;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	7579	.	a	c	1	q30	DP=6325;AC=22;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	7596	.	t	g	1	q30	DP=6108;AC=20;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	7602	.	a	c	3	q30	DP=6005;AC=24;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	7607	.	g	t	4	q30	DP=5957;AC=25;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	7613	.	c	a	1	q30	DP=5825;AC=19;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	7616	.	g	a	1	q30	DP=5796;AC=19;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	7616	.	g	t	13	q30	DP=5796;AC=31;AF=0.0053
SIVmac239M5SpXplasmid_reference_1269-10407	7617	.	g	t	1	q30	DP=5789;AC=19;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	7618	.	a	c	1	q30	DP=5774;AC=20;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	7621	.	t	a	2	q30	DP=5490;AC=21;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	7623	.	t	a	1	q30	DP=5492;AC=19;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	7630	.	a	c	3	q30	DP=5141;AC=20;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	7638	.	g	t	1	q30	DP=4980;AC=16;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	7668	.	t	g	1	q30	DP=1970;AC=6;AF=0.0030
SIVmac239M5SpXplasmid_reference_1269-10407	7669	.	a	c	1	q30	DP=1824;AC=6;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	7676	.	t	a	7	q30	DP=1204;AC=7;AF=0.0058
SIVmac239M5SpXplasmid_reference_1269-10407	7677	.	t	g	1	q30;ac5	DP=1193;AC=4;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	7680	.	a	c	3	q30	DP=1177;AC=5;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	7690	.	g	t	1	q30;ac5	DP=1158;AC=4;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	7696	.	t	g	3	q30	DP=1144;AC=5;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	7698	.	c	a	1	q30;ac5	DP=1187;AC=4;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	7708	.	t	g	8	q30	DP=1516;AC=9;AF=0.0059
SIVmac239M5SpXplasmid_reference_1269-10407	7712	.	g	t	1	q30	DP=1911;AC=6;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	7714	.	t	g	2	q30	DP=1974;AC=7;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	7727	.	a	c	8	q30	DP=2653;AC=14;AF=0.0053
SIVmac239M5SpXplasmid_reference_1269-10407	7728	.	a	c	2	q30	DP=2680;AC=10;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	7729	.	t	a	3	q30	DP=2713;AC=11;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	7736	.	t	g	1	q30	DP=2803;AC=9;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	7741	.	t	g	9	q30	DP=3016;AC=16;AF=0.0053
SIVmac239M5SpXplasmid_reference_1269-10407	7745	.	g	t	4	q30	DP=3098;AC=13;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	7748	.	g	t	4	q30	DP=3157;AC=14;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	7749	.	g	t	4	q30	DP=3221;AC=14;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	7750	.	g	a	1	q30	DP=3335;AC=11;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	7750	.	g	t	14	q30	DP=3335;AC=20;AF=0.0060
SIVmac239M5SpXplasmid_reference_1269-10407	7757	.	g	t	6	q30	DP=3789;AC=18;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	7759	.	c	a	3	q30	DP=3819;AC=15;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	7761	.	g	t	1	q30	DP=3806;AC=12;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	7765	.	t	g	3	q30	DP=3910;AC=16;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	7769	.	t	g	3	q30	DP=4044;AC=16;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	7770	.	t	a	6	q30	DP=4055;AC=19;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	7770	.	t	g	3	q30	DP=4055;AC=16;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	7772	.	c	a	2	q30	DP=4021;AC=15;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	7772	.	c	t	4	q30	DP=4021;AC=17;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	7773	.	c	a	1	q30	DP=4045;AC=14;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	7774	.	c	a	3	q30	DP=4043;AC=16;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	7777	.	c	a	4	q30	DP=4059;AC=17;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	7779	.	t	a	2	q30	DP=4176;AC=16;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	7779	.	t	c	2	q30	DP=4176;AC=16;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	7779	.	t	g	21	q30	DP=4176;AC=27;AF=0.0065
SIVmac239M5SpXplasmid_reference_1269-10407	7781	.	t	g	13	q30	DP=4303;AC=24;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	7782	.	t	g	6	q30	DP=4335;AC=20;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	7784	.	t	g	2	q30	DP=4408;AC=16;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	7785	.	t	g	21	q30	DP=4401;AC=28;AF=0.0064
SIVmac239M5SpXplasmid_reference_1269-10407	7786	.	t	a	1	q30	DP=4409;AC=14;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	7786	.	t	g	18	q30	DP=4409;AC=27;AF=0.0061
SIVmac239M5SpXplasmid_reference_1269-10407	7790	.	g	t	2	q30	DP=4341;AC=16;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	7793	.	g	t	1	q30	DP=4375;AC=14;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	7795	.	c	a	17	q30	DP=4517;AC=27;AF=0.0060
SIVmac239M5SpXplasmid_reference_1269-10407	7796	.	c	a	32	PASS	DP=4553;AC=33;AF=0.0072
SIVmac239M5SpXplasmid_reference_1269-10407	7797	.	c	a	15	q30	DP=4555;AC=26;AF=0.0057
SIVmac239M5SpXplasmid_reference_1269-10407	7799	.	t	g	8	q30	DP=4682;AC=23;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	7800	.	a	c	15	q30	DP=4750;AC=27;AF=0.0057
SIVmac239M5SpXplasmid_reference_1269-10407	7801	.	t	a	8	q30	DP=4772;AC=23;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	7801	.	t	g	96	PASS	DP=4772;AC=51;AF=0.0107
SIVmac239M5SpXplasmid_reference_1269-10407	7802	.	c	a	4	q30	DP=4761;AC=20;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	7803	.	c	a	7	q30	DP=4825;AC=23;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	7805	.	a	c	3	q30	DP=4823;AC=19;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	7806	.	c	a	1	q30	DP=4823;AC=17;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	7808	.	g	t	5	q30	DP=4765;AC=21;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	7809	.	g	t	2	q30	DP=4748;AC=18;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	7810	.	a	c	2	q30	DP=4787;AC=18;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	7810	.	a	t	1	q30	DP=4787;AC=16;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	7812	.	c	a	1	q30	DP=4744;AC=16;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	7812	.	c	t	13	q30	DP=4744;AC=26;AF=0.0055
SIVmac239M5SpXplasmid_reference_1269-10407	7813	.	c	a	11	q30	DP=4758;AC=25;AF=0.0053
SIVmac239M5SpXplasmid_reference_1269-10407	7814	.	g	t	2	q30	DP=4758;AC=18;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	7815	.	g	t	6	q30	DP=4796;AC=22;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	7817	.	a	c	32	PASS	DP=4789;AC=34;AF=0.0071
SIVmac239M5SpXplasmid_reference_1269-10407	7819	.	t	g	13	q30	DP=4772;AC=26;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	7821	.	c	a	1	q30	DP=4821;AC=17;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	7822	.	c	a	7	q30	DP=4850;AC=23;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	7823	.	a	c	6	q30	DP=4875;AC=22;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	7824	.	a	c	7	q30	DP=4891;AC=23;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	7825	.	c	a	4	q30	DP=4934;AC=21;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	7826	.	c	a	1	q30	DP=4937;AC=16;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	7827	.	a	c	22	q30	DP=4932;AC=31;AF=0.0063
SIVmac239M5SpXplasmid_reference_1269-10407	7828	.	g	t	2	q30	DP=4944;AC=18;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	7829	.	a	c	100	PASS	DP=4918;AC=57;AF=0.0116
SIVmac239M5SpXplasmid_reference_1269-10407	7829	.	a	g	27	q30	DP=4918;AC=33;AF=0.0067
SIVmac239M5SpXplasmid_reference_1269-10407	7829	.	a	t	6	q30	DP=4918;AC=22;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	7830	.	g	t	13	q30	DP=4921;AC=27;AF=0.0055
SIVmac239M5SpXplasmid_reference_1269-10407	7831	.	a	c	49	PASS	DP=4906;AC=40;AF=0.0082
SIVmac239M5SpXplasmid_reference_1269-10407	7831	.	a	t	6	q30	DP=4906;AC=22;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	7832	.	a	c	30	PASS	DP=4902;AC=34;AF=0.0069
SIVmac239M5SpXplasmid_reference_1269-10407	7833	.	g	t	5	q30	DP=4951;AC=22;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	7834	.	g	t	4	q30	DP=4945;AC=21;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	7835	.	c	a	13	q30	DP=4962;AC=27;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	7836	.	a	c	3	q30	DP=4954;AC=20;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	7837	.	a	c	26	q30	DP=4965;AC=33;AF=0.0066
SIVmac239M5SpXplasmid_reference_1269-10407	7838	.	a	c	17	q30	DP=4969;AC=29;AF=0.0058
SIVmac239M5SpXplasmid_reference_1269-10407	7839	.	g	t	2	q30	DP=5041;AC=19;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	7840	.	a	c	28	q30	DP=5036;AC=34;AF=0.0068
SIVmac239M5SpXplasmid_reference_1269-10407	7841	.	a	c	4	q30	DP=5022;AC=21;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	7841	.	a	g	2	q30	DP=5022;AC=19;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	7842	.	a	c	1	q30	DP=4949;AC=17;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	7843	.	g	t	6	q30	DP=4979;AC=23;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	7844	.	a	c	58	PASS	DP=4984;AC=43;AF=0.0086
SIVmac239M5SpXplasmid_reference_1269-10407	7844	.	a	g	35	PASS	DP=4984;AC=36;AF=0.0072
SIVmac239M5SpXplasmid_reference_1269-10407	7845	.	g	t	14	q30	DP=5024;AC=28;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	7846	.	a	c	34	PASS	DP=5035;AC=36;AF=0.0071
SIVmac239M5SpXplasmid_reference_1269-10407	7846	.	a	t	4	q30	DP=5035;AC=21;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	7847	.	c	a	4	q30	DP=5052;AC=21;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	7849	.	g	t	1	q30	DP=5039;AC=18;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	7850	.	t	a	1	q30	DP=5090;AC=17;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	7850	.	t	c	3	q30	DP=5090;AC=20;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	7850	.	t	g	1	q30	DP=5090;AC=18;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	7851	.	g	t	2	q30	DP=5123;AC=19;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	7852	.	g	t	12	q30	DP=5131;AC=27;AF=0.0053
SIVmac239M5SpXplasmid_reference_1269-10407	7853	.	a	c	42	PASS	DP=5115;AC=39;AF=0.0076
SIVmac239M5SpXplasmid_reference_1269-10407	7854	.	g	t	7	q30	DP=5119;AC=24;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	7855	.	a	c	27	q30	DP=5119;AC=34;AF=0.0066
SIVmac239M5SpXplasmid_reference_1269-10407	7855	.	a	t	1	q30	DP=5119;AC=17;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	7856	.	a	c	10	q30	DP=5088;AC=26;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	7857	.	g	t	1	q30	DP=5079;AC=17;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	7858	.	g	t	9	q30	DP=5014;AC=25;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	7860	.	g	t	1	q30	DP=4950;AC=16;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	7862	.	t	c	1	q30	DP=4946;AC=17;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	7862	.	t	g	4	q30	DP=4946;AC=21;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	7864	.	g	t	11	q30	DP=4965;AC=26;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	7867	.	a	c	7	q30	DP=5045;AC=24;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	7869	.	a	c	5	q30	DP=5029;AC=22;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	7872	.	t	a	38	PASS	DP=5160;AC=38;AF=0.0074
SIVmac239M5SpXplasmid_reference_1269-10407	7872	.	t	c	100	PASS	DP=5160;AC=63;AF=0.0122
SIVmac239M5SpXplasmid_reference_1269-10407	7872	.	t	g	22	q30	DP=5160;AC=32;AF=0.0062
SIVmac239M5SpXplasmid_reference_1269-10407	7873	.	c	a	15	q30	DP=5170;AC=29;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	7874	.	c	a	22	q30	DP=5123;AC=32;AF=0.0062
SIVmac239M5SpXplasmid_reference_1269-10407	7875	.	t	g	6	q30	DP=5124;AC=23;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	7876	.	g	t	17	q30	DP=5189;AC=30;AF=0.0058
SIVmac239M5SpXplasmid_reference_1269-10407	7877	.	g	t	1	q30	DP=5197;AC=18;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	7878	.	c	a	1	q30	DP=5199;AC=18;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	7879	.	c	a	22	q30	DP=5163;AC=32;AF=0.0062
SIVmac239M5SpXplasmid_reference_1269-10407	7882	.	g	t	10	q30	DP=5151;AC=26;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	7883	.	g	t	3	q30	DP=5134;AC=20;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	7885	.	a	c	4	q30	DP=5066;AC=21;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	7887	.	a	c	19	q30	DP=5160;AC=31;AF=0.0060
SIVmac239M5SpXplasmid_reference_1269-10407	7889	.	a	c	13	q30	DP=5165;AC=28;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	7891	.	a	c	31	PASS	DP=5389;AC=37;AF=0.0069
SIVmac239M5SpXplasmid_reference_1269-10407	7892	.	a	c	15	q30	DP=5413;AC=30;AF=0.0055
SIVmac239M5SpXplasmid_reference_1269-10407	7893	.	t	g	1	q30	DP=5413;AC=18;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	7895	.	t	g	4	q30	DP=5377;AC=22;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	7896	.	a	c	3	q30	DP=5344;AC=21;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	7897	.	t	a	1	q30	DP=5389;AC=18;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	7897	.	t	g	1	q30	DP=5389;AC=19;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	7898	.	t	a	2	q30	DP=5364;AC=20;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	7899	.	c	a	30	PASS	DP=5279;AC=36;AF=0.0068
SIVmac239M5SpXplasmid_reference_1269-10407	7900	.	a	c	9	q30	DP=5089;AC=25;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	7901	.	t	a	1	q30	DP=5107;AC=17;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	7902	.	t	g	10	q30	DP=5126;AC=26;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	7903	.	t	a	1	q30	DP=5107;AC=18;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	7903	.	t	g	12	q30	DP=5107;AC=27;AF=0.0053
SIVmac239M5SpXplasmid_reference_1269-10407	7904	.	c	a	5	q30	DP=5111;AC=22;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	7905	.	c	a	9	q30	DP=5069;AC=25;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	7908	.	a	c	32	PASS	DP=4988;AC=35;AF=0.0070
SIVmac239M5SpXplasmid_reference_1269-10407	7909	.	t	a	14	q30	DP=5064;AC=28;AF=0.0055
SIVmac239M5SpXplasmid_reference_1269-10407	7909	.	t	g	9	q30	DP=5064;AC=25;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	7910	.	c	a	7	q30	DP=5055;AC=24;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	7911	.	c	a	16	q30	DP=5026;AC=29;AF=0.0058
SIVmac239M5SpXplasmid_reference_1269-10407	7913	.	c	a	8	q30	DP=4929;AC=24;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	7914	.	c	a	14	q30	DP=4897;AC=27;AF=0.0055
SIVmac239M5SpXplasmid_reference_1269-10407	7920	.	a	c	9	q30	DP=4855;AC=24;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	7921	.	t	g	1	q30	DP=4844;AC=16;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	7924	.	g	t	2	q30	DP=4746;AC=18;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	7925	.	c	a	4	q30	DP=4897;AC=21;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	7926	.	c	a	10	q30	DP=4872;AC=25;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	7927	.	t	a	3	q30	DP=4856;AC=19;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	7927	.	t	c	10	q30	DP=4856;AC=25;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	7927	.	t	g	6	q30	DP=4856;AC=22;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	7928	.	c	a	16	q30	DP=4862;AC=28;AF=0.0058
SIVmac239M5SpXplasmid_reference_1269-10407	7929	.	t	g	5	q30	DP=4841;AC=21;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	7931	.	g	a	1	q30	DP=4880;AC=16;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	7932	.	a	c	5	q30	DP=4882;AC=21;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	7933	.	c	a	1	q30	DP=4867;AC=16;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	7934	.	t	a	1	q30	DP=4711;AC=16;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	7934	.	t	g	2	q30	DP=4711;AC=18;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	7936	.	g	t	36	PASS	DP=4711;AC=35;AF=0.0074
SIVmac239M5SpXplasmid_reference_1269-10407	7937	.	g	t	10	q30	DP=4686;AC=24;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	7938	.	c	a	4	q30	DP=4652;AC=20;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	7940	.	a	c	18	q30	DP=4637;AC=28;AF=0.0060
SIVmac239M5SpXplasmid_reference_1269-10407	7941	.	t	g	2	q30	DP=4665;AC=17;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	7944	.	a	c	7	q30	DP=4607;AC=22;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	7945	.	g	t	4	q30	DP=4614;AC=19;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	7947	.	a	c	14	q30	DP=4596;AC=26;AF=0.0057
SIVmac239M5SpXplasmid_reference_1269-10407	7950	.	t	a	1	q30	DP=4603;AC=15;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	7950	.	t	g	1	q30	DP=4603;AC=15;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	7951	.	g	t	7	q30	DP=4487;AC=21;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	7953	.	a	c	3	q30	DP=4535;AC=18;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	7954	.	g	t	3	q30	DP=4558;AC=18;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	7955	.	a	c	35	PASS	DP=4556;AC=34;AF=0.0075
SIVmac239M5SpXplasmid_reference_1269-10407	7955	.	a	t	1	q30	DP=4556;AC=16;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	7956	.	a	c	3	q30	DP=4570;AC=18;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	7958	.	c	a	2	q30	DP=4412;AC=16;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	7959	.	t	g	14	q30	DP=4429;AC=25;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	7960	.	t	g	3	q30	DP=4418;AC=18;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	7961	.	g	t	1	q30	DP=4442;AC=15;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	7962	.	c	a	2	q30	DP=4444;AC=16;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	7966	.	c	a	6	q30	DP=4525;AC=21;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	7967	.	g	t	17	q30	DP=4514;AC=27;AF=0.0060
SIVmac239M5SpXplasmid_reference_1269-10407	7968	.	a	c	15	q30	DP=4478;AC=26;AF=0.0058
SIVmac239M5SpXplasmid_reference_1269-10407	7968	.	a	t	2	q30	DP=4478;AC=16;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	7969	.	g	t	5	q30	DP=4556;AC=20;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	7970	.	a	c	22	q30	DP=4494;AC=29;AF=0.0065
SIVmac239M5SpXplasmid_reference_1269-10407	7970	.	a	t	1	q30	DP=4494;AC=15;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	7971	.	g	t	2	q30	DP=4616;AC=17;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	7976	.	c	a	20	q30	DP=4715;AC=29;AF=0.0062
SIVmac239M5SpXplasmid_reference_1269-10407	7977	.	c	a	7	q30	DP=4684;AC=22;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	7977	.	c	t	1	q30	DP=4684;AC=15;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	7979	.	g	t	1	q30	DP=4547;AC=16;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	7980	.	a	c	4	q30	DP=4422;AC=19;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	7980	.	a	t	2	q30	DP=4422;AC=17;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	7981	.	t	a	2	q30	DP=4435;AC=17;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	7981	.	t	g	59	PASS	DP=4435;AC=40;AF=0.0090
SIVmac239M5SpXplasmid_reference_1269-10407	7982	.	c	a	4	q30	DP=4398;AC=19;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	7983	.	c	a	7	q30	DP=4352;AC=21;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	7984	.	t	g	13	q30	DP=4326;AC=24;AF=0.0055
SIVmac239M5SpXplasmid_reference_1269-10407	7985	.	c	a	7	q30	DP=4341;AC=21;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	7986	.	c	a	1	q30	DP=4331;AC=15;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	7986	.	c	t	1	q30	DP=4331;AC=15;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	7987	.	a	c	2	q30	DP=4391;AC=16;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	7988	.	a	c	2	q30	DP=4391;AC=17;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	7989	.	c	a	6	q30	DP=4415;AC=20;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	7990	.	c	a	31	PASS	DP=4428;AC=32;AF=0.0072
SIVmac239M5SpXplasmid_reference_1269-10407	7992	.	a	c	16	q30	DP=4419;AC=26;AF=0.0059
SIVmac239M5SpXplasmid_reference_1269-10407	7992	.	a	t	2	q30	DP=4419;AC=16;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	7993	.	t	g	41	PASS	DP=4410;AC=35;AF=0.0079
SIVmac239M5SpXplasmid_reference_1269-10407	7994	.	a	c	6	q30	DP=4405;AC=20;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	7994	.	a	g	7	q30	DP=4405;AC=21;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	7995	.	c	a	2	q30	DP=4506;AC=17;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	7996	.	t	a	21	q30	DP=4433;AC=28;AF=0.0063
SIVmac239M5SpXplasmid_reference_1269-10407	7996	.	t	c	1	q30	DP=4433;AC=14;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	7996	.	t	g	63	PASS	DP=4433;AC=41;AF=0.0092
SIVmac239M5SpXplasmid_reference_1269-10407	7997	.	c	a	18	q30	DP=4450;AC=27;AF=0.0061
SIVmac239M5SpXplasmid_reference_1269-10407	7998	.	c	a	2	q30	DP=4430;AC=17;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	8001	.	a	c	4	q30	DP=4320;AC=18;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	8001	.	a	g	3	q30	DP=4320;AC=17;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	8001	.	a	t	1	q30	DP=4320;AC=14;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	8002	.	g	a	1	q30	DP=4347;AC=14;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	8002	.	g	t	9	q30	DP=4347;AC=22;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	8003	.	g	a	1	q30	DP=4317;AC=14;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	8003	.	g	t	1	q30	DP=4317;AC=14;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	8005	.	t	a	5	q30	DP=4208;AC=19;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	8005	.	t	c	8	q30	DP=4208;AC=21;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	8005	.	t	g	1	q30	DP=4208;AC=14;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	8006	.	c	a	6	q30	DP=4339;AC=20;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	8007	.	t	g	8	q30	DP=4329;AC=21;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	8008	.	c	a	4	q30	DP=4351;AC=18;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	8012	.	g	a	1	q30	DP=4341;AC=15;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	8012	.	g	t	5	q30	DP=4341;AC=19;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	8013	.	a	c	1	q30	DP=4441;AC=14;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	8016	.	c	a	1	q30	DP=4514;AC=16;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	8017	.	t	a	1	q30	DP=4509;AC=15;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	8017	.	t	g	5	q30	DP=4509;AC=20;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	8020	.	a	c	1	q30	DP=4524;AC=16;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	8020	.	a	g	1	q30	DP=4524;AC=15;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	8021	.	g	t	1	q30	DP=4524;AC=16;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	8022	.	a	c	14	q30	DP=4417;AC=25;AF=0.0057
SIVmac239M5SpXplasmid_reference_1269-10407	8022	.	a	g	3	q30	DP=4417;AC=18;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	8023	.	g	t	20	q30	DP=4485;AC=28;AF=0.0062
SIVmac239M5SpXplasmid_reference_1269-10407	8025	.	a	c	12	q30	DP=4409;AC=24;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	8025	.	a	t	1	q30	DP=4409;AC=14;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	8026	.	t	a	2	q30	DP=4453;AC=17;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	8026	.	t	g	23	q30	DP=4453;AC=29;AF=0.0065
SIVmac239M5SpXplasmid_reference_1269-10407	8027	.	t	a	1	q30	DP=4437;AC=15;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	8027	.	t	g	8	q30	DP=4437;AC=22;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	8028	.	c	a	2	q30	DP=4432;AC=16;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	8032	.	a	c	8	q30	DP=4421;AC=22;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	8033	.	a	c	1	q30	DP=4399;AC=14;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	8034	.	g	t	1	q30	DP=4482;AC=16;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	8035	.	t	a	1	q30	DP=4447;AC=14;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	8035	.	t	g	12	q30	DP=4447;AC=24;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	8036	.	c	a	13	q30	DP=4551;AC=25;AF=0.0055
SIVmac239M5SpXplasmid_reference_1269-10407	8037	.	c	a	19	q30	DP=4551;AC=28;AF=0.0062
SIVmac239M5SpXplasmid_reference_1269-10407	8038	.	t	a	2	q30	DP=4546;AC=17;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	8038	.	t	g	8	q30	DP=4546;AC=22;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	8039	.	c	a	1	q30	DP=4515;AC=16;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	8040	.	a	c	4	q30	DP=4515;AC=19;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	8042	.	g	t	5	q30	DP=4679;AC=21;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	8043	.	a	c	3	q30	DP=4613;AC=18;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	8045	.	t	g	17	q30	DP=4519;AC=27;AF=0.0060
SIVmac239M5SpXplasmid_reference_1269-10407	8047	.	a	c	3	q30	DP=4651;AC=19;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	8050	.	t	g	1	q30	DP=4493;AC=16;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	8051	.	g	t	4	q30	DP=4569;AC=19;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	8052	.	a	c	2	q30	DP=4570;AC=17;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	8053	.	c	a	6	q30	DP=4624;AC=21;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	8055	.	t	g	5	q30	DP=4561;AC=20;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	8056	.	a	c	5	q30	DP=4872;AC=21;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	8058	.	c	a	8	q30	DP=5005;AC=24;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	8059	.	t	g	14	q30	DP=5010;AC=28;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	8060	.	a	c	2	q30	DP=4974;AC=18;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	8061	.	c	a	1	q30	DP=5155;AC=17;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	8062	.	a	c	4	q30	DP=5138;AC=22;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	8063	.	a	c	11	q30	DP=5198;AC=27;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	8063	.	a	g	1	q30	DP=5198;AC=17;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	8064	.	t	a	4	q30	DP=5202;AC=22;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	8064	.	t	g	100	PASS	DP=5202;AC=65;AF=0.0125
SIVmac239M5SpXplasmid_reference_1269-10407	8065	.	a	c	24	q30	DP=5188;AC=33;AF=0.0064
SIVmac239M5SpXplasmid_reference_1269-10407	8065	.	a	g	4	q30	DP=5188;AC=22;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	8066	.	t	g	75	PASS	DP=5233;AC=49;AF=0.0094
SIVmac239M5SpXplasmid_reference_1269-10407	8067	.	g	t	1	q30	DP=5246;AC=17;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	8069	.	g	t	10	q30	DP=5283;AC=27;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	8070	.	t	c	7	q30	DP=5117;AC=24;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	8070	.	t	g	62	PASS	DP=5117;AC=45;AF=0.0088
SIVmac239M5SpXplasmid_reference_1269-10407	8071	.	g	t	5	q30	DP=5098;AC=22;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	8072	.	g	a	1	q30	DP=5144;AC=17;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	8072	.	g	t	3	q30	DP=5144;AC=20;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	8073	.	a	g	19	q30	DP=5149;AC=31;AF=0.0060
SIVmac239M5SpXplasmid_reference_1269-10407	8073	.	a	t	8	q30	DP=5149;AC=25;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	8076	.	t	g	51	PASS	DP=5139;AC=42;AF=0.0082
SIVmac239M5SpXplasmid_reference_1269-10407	8077	.	a	c	1	q30	DP=5212;AC=18;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	8078	.	t	g	100	PASS	DP=5220;AC=63;AF=0.0121
SIVmac239M5SpXplasmid_reference_1269-10407	8079	.	t	g	88	PASS	DP=5232;AC=52;AF=0.0099
SIVmac239M5SpXplasmid_reference_1269-10407	8080	.	t	g	100	PASS	DP=5269;AC=63;AF=0.0120
SIVmac239M5SpXplasmid_reference_1269-10407	8081	.	c	a	1	q30	DP=5277;AC=18;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	8082	.	c	a	2	q30	DP=5219;AC=19;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	8083	.	a	g	6	q30	DP=5223;AC=24;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	8083	.	a	t	2	q30	DP=5223;AC=20;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	8084	.	t	g	100	PASS	DP=5219;AC=75;AF=0.0144
SIVmac239M5SpXplasmid_reference_1269-10407	8085	.	g	t	4	q30	DP=5221;AC=22;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	8086	.	a	c	24	q30	DP=5189;AC=33;AF=0.0064
SIVmac239M5SpXplasmid_reference_1269-10407	8086	.	a	g	100	PASS	DP=5189;AC=84;AF=0.0162
SIVmac239M5SpXplasmid_reference_1269-10407	8087	.	g	t	24	q30	DP=5187;AC=33;AF=0.0064
SIVmac239M5SpXplasmid_reference_1269-10407	8088	.	g	t	5	q30	DP=5198;AC=23;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	8090	.	g	a	1	q30	DP=5176;AC=18;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	8090	.	g	t	15	q30	DP=5176;AC=29;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	8092	.	t	g	61	PASS	DP=5360;AC=46;AF=0.0086
SIVmac239M5SpXplasmid_reference_1269-10407	8093	.	c	a	8	q30	DP=5393;AC=26;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	8094	.	c	a	8	q30	DP=5393;AC=26;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	8094	.	c	t	1	q30	DP=5393;AC=19;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	8095	.	a	c	1	q30	DP=5369;AC=18;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	8096	.	g	t	10	q30	DP=5376;AC=27;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	8098	.	c	a	5	q30	DP=5379;AC=23;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	8099	.	c	a	24	q30	DP=5327;AC=34;AF=0.0064
SIVmac239M5SpXplasmid_reference_1269-10407	8101	.	t	c	3	q30	DP=5393;AC=21;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	8101	.	t	g	100	PASS	DP=5393;AC=57;AF=0.0106
SIVmac239M5SpXplasmid_reference_1269-10407	8102	.	c	a	1	q30	DP=5427;AC=19;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	8103	.	t	g	13	q30	DP=5428;AC=29;AF=0.0053
SIVmac239M5SpXplasmid_reference_1269-10407	8104	.	g	t	2	q30	DP=5436;AC=20;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	8105	.	g	t	1	q30	DP=5438;AC=19;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	8106	.	a	g	13	q30	DP=5428;AC=29;AF=0.0053
SIVmac239M5SpXplasmid_reference_1269-10407	8107	.	g	t	3	q30	DP=5429;AC=21;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	8108	.	a	c	8	q30	DP=5453;AC=26;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	8108	.	a	g	14	q30	DP=5453;AC=30;AF=0.0055
SIVmac239M5SpXplasmid_reference_1269-10407	8108	.	a	t	1	q30	DP=5453;AC=18;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	8109	.	t	a	9	q30	DP=5337;AC=26;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	8109	.	t	g	89	PASS	DP=5337;AC=53;AF=0.0099
SIVmac239M5SpXplasmid_reference_1269-10407	8110	.	c	a	1	q30	DP=5365;AC=18;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	8111	.	t	g	89	PASS	DP=5348;AC=53;AF=0.0099
SIVmac239M5SpXplasmid_reference_1269-10407	8112	.	g	t	13	q30	DP=5371;AC=29;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	8113	.	c	a	1	q30	DP=5370;AC=18;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	8115	.	a	c	1	q30	DP=5398;AC=18;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	8117	.	a	c	3	q30	DP=5347;AC=21;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	8119	.	a	c	8	q30	DP=5358;AC=26;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	8119	.	a	g	100	PASS	DP=5358;AC=64;AF=0.0119
SIVmac239M5SpXplasmid_reference_1269-10407	8119	.	a	t	5	q30	DP=5358;AC=23;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	8120	.	g	t	1	q30	DP=5375;AC=18;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	8121	.	a	c	2	q30	DP=5367;AC=20;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	8121	.	a	g	6	q30	DP=5367;AC=24;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	8122	.	c	a	5	q30	DP=5428;AC=24;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	8122	.	c	g	1	q30	DP=5428;AC=18;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	8122	.	c	t	1	q30	DP=5428;AC=19;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	8123	.	t	c	3	q30	DP=5424;AC=21;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	8123	.	t	g	91	PASS	DP=5424;AC=54;AF=0.0100
SIVmac239M5SpXplasmid_reference_1269-10407	8124	.	c	a	13	q30	DP=5429;AC=29;AF=0.0053
SIVmac239M5SpXplasmid_reference_1269-10407	8125	.	t	g	96	PASS	DP=5394;AC=55;AF=0.0102
SIVmac239M5SpXplasmid_reference_1269-10407	8126	.	t	g	57	PASS	DP=5392;AC=45;AF=0.0083
SIVmac239M5SpXplasmid_reference_1269-10407	8127	.	g	t	29	q30	DP=5393;AC=36;AF=0.0067
SIVmac239M5SpXplasmid_reference_1269-10407	8128	.	c	a	10	q30	DP=5381;AC=27;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	8129	.	g	t	10	q30	DP=5370;AC=27;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	8130	.	g	t	3	q30	DP=5353;AC=21;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	8131	.	g	t	3	q30	DP=5345;AC=21;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	8132	.	c	a	18	q30	DP=5309;AC=31;AF=0.0058
SIVmac239M5SpXplasmid_reference_1269-10407	8132	.	c	g	1	q30	DP=5309;AC=18;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	8133	.	g	t	1	q30	DP=5314;AC=17;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	8134	.	c	a	10	q30	DP=5346;AC=27;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	8136	.	t	a	11	q30	DP=5394;AC=28;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	8136	.	t	c	11	q30	DP=5394;AC=28;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	8136	.	t	g	6	q30	DP=5394;AC=24;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	8137	.	g	t	23	q30	DP=5406;AC=34;AF=0.0063
SIVmac239M5SpXplasmid_reference_1269-10407	8138	.	g	a	3	q30	DP=5423;AC=21;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	8138	.	g	t	3	q30	DP=5423;AC=21;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	8141	.	a	c	100	PASS	DP=5422;AC=79;AF=0.0146
SIVmac239M5SpXplasmid_reference_1269-10407	8141	.	a	g	34	PASS	DP=5422;AC=38;AF=0.0070
SIVmac239M5SpXplasmid_reference_1269-10407	8141	.	a	t	40	PASS	DP=5422;AC=40;AF=0.0074
SIVmac239M5SpXplasmid_reference_1269-10407	8143	.	a	c	52	PASS	DP=5631;AC=45;AF=0.0080
SIVmac239M5SpXplasmid_reference_1269-10407	8143	.	a	g	11	q30	DP=5631;AC=29;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	8143	.	a	t	2	q30	DP=5631;AC=21;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	8144	.	c	a	1	q30	DP=5734;AC=19;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	8145	.	t	c	1	q30	DP=5709;AC=20;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	8145	.	t	g	14	q30	DP=5709;AC=31;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	8146	.	t	g	65	PASS	DP=5695;AC=49;AF=0.0086
SIVmac239M5SpXplasmid_reference_1269-10407	8147	.	a	c	14	q30	DP=5725;AC=31;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	8147	.	a	t	1	q30	DP=5725;AC=20;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	8148	.	t	g	5	q30	DP=5721;AC=25;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	8149	.	g	t	5	q30	DP=5691;AC=25;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	8150	.	g	t	23	q30	DP=5677;AC=35;AF=0.0062
SIVmac239M5SpXplasmid_reference_1269-10407	8152	.	a	c	52	PASS	DP=5431;AC=44;AF=0.0081
SIVmac239M5SpXplasmid_reference_1269-10407	8152	.	a	g	26	q30	DP=5431;AC=35;AF=0.0064
SIVmac239M5SpXplasmid_reference_1269-10407	8154	.	a	c	9	q30	DP=5435;AC=27;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	8154	.	a	g	1	q30	DP=5435;AC=19;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	8155	.	c	a	2	q30	DP=5880;AC=22;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	8156	.	t	a	5	q30	DP=5946;AC=26;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	8156	.	t	c	3	q30	DP=5946;AC=24;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	8156	.	t	g	40	PASS	DP=5946;AC=43;AF=0.0072
SIVmac239M5SpXplasmid_reference_1269-10407	8157	.	c	a	10	q30	DP=6045;AC=30;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	8158	.	t	c	10	q30	DP=6037;AC=30;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	8158	.	t	g	28	q30	DP=6037;AC=39;AF=0.0065
SIVmac239M5SpXplasmid_reference_1269-10407	8159	.	t	g	8	q30	DP=6061;AC=29;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	8160	.	a	c	2	q30	DP=6072;AC=23;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	8163	.	a	c	39	PASS	DP=6012;AC=43;AF=0.0072
SIVmac239M5SpXplasmid_reference_1269-10407	8163	.	a	g	19	q30	DP=6012;AC=35;AF=0.0058
SIVmac239M5SpXplasmid_reference_1269-10407	8163	.	a	t	3	q30	DP=6012;AC=24;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	8165	.	a	c	34	PASS	DP=5589;AC=39;AF=0.0070
SIVmac239M5SpXplasmid_reference_1269-10407	8165	.	a	g	10	q30	DP=5589;AC=28;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	8165	.	a	t	1	q30	DP=5589;AC=20;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	8169	.	g	t	9	q30	DP=5690;AC=28;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	8170	.	g	t	1	q30	DP=5704;AC=20;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	8171	.	a	c	2	q30	DP=5701;AC=21;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	8172	.	a	c	2	q30	DP=5697;AC=21;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	8174	.	a	c	3	q30	DP=5663;AC=22;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	8174	.	a	g	2	q30	DP=5663;AC=21;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	8175	.	t	g	1	q30	DP=5596;AC=18;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	8176	.	g	a	5	q30	DP=5555;AC=24;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	8176	.	g	t	10	q30	DP=5555;AC=28;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	8178	.	a	c	1	q30	DP=5565;AC=18;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	8181	.	c	a	1	q30	DP=5586;AC=19;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	8182	.	t	g	4	q30	DP=5560;AC=23;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	8183	.	c	a	13	q30	DP=5566;AC=30;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	8186	.	a	c	4	q30	DP=5541;AC=23;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	8187	.	a	c	17	q30	DP=5561;AC=32;AF=0.0058
SIVmac239M5SpXplasmid_reference_1269-10407	8187	.	a	t	2	q30	DP=5561;AC=21;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	8188	.	t	a	15	q30	DP=5575;AC=31;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	8188	.	t	g	56	PASS	DP=5575;AC=46;AF=0.0083
SIVmac239M5SpXplasmid_reference_1269-10407	8189	.	c	a	16	q30	DP=5711;AC=32;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	8190	.	c	a	18	q30	DP=5704;AC=33;AF=0.0058
SIVmac239M5SpXplasmid_reference_1269-10407	8191	.	c	a	33	PASS	DP=5696;AC=39;AF=0.0068
SIVmac239M5SpXplasmid_reference_1269-10407	8192	.	c	a	33	PASS	DP=5693;AC=39;AF=0.0069
SIVmac239M5SpXplasmid_reference_1269-10407	8193	.	a	c	11	q30	DP=5690;AC=29;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	8196	.	a	c	55	PASS	DP=5657;AC=46;AF=0.0081
SIVmac239M5SpXplasmid_reference_1269-10407	8199	.	a	c	29	q30	DP=5785;AC=38;AF=0.0066
SIVmac239M5SpXplasmid_reference_1269-10407	8200	.	t	g	2	q30	DP=5805;AC=22;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	8208	.	g	t	5	q30	DP=5659;AC=25;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	8209	.	g	t	4	q30	DP=5745;AC=24;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	8211	.	c	a	6	q30	DP=5711;AC=26;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	8218	.	t	c	6	q30	DP=5606;AC=25;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	8218	.	t	g	1	q30	DP=5606;AC=19;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	8221	.	c	a	1	q30	DP=5767;AC=20;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	8222	.	t	g	4	q30	DP=5771;AC=24;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	8223	.	c	a	9	q30	DP=5947;AC=29;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	8224	.	t	a	1	q30	DP=5913;AC=21;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	8224	.	t	c	25	q30	DP=5913;AC=37;AF=0.0063
SIVmac239M5SpXplasmid_reference_1269-10407	8226	.	t	g	2	q30	DP=6049;AC=23;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	8229	.	t	g	2	q30	DP=6027;AC=22;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	8230	.	g	t	1	q30	DP=6036;AC=20;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	8231	.	a	c	9	q30	DP=6001;AC=29;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	8232	.	g	t	1	q30	DP=5866;AC=20;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	8233	.	g	a	2	q30	DP=5932;AC=22;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	8233	.	g	t	2	q30	DP=5932;AC=22;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	8234	.	g	t	1	q30	DP=5807;AC=20;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	8240	.	a	c	10	q30	DP=6090;AC=30;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	8242	.	t	g	2	q30	DP=6017;AC=22;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	8247	.	t	a	3	q30	DP=6195;AC=25;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	8247	.	t	g	6	q30	DP=6195;AC=28;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	8250	.	g	t	5	q30	DP=6270;AC=27;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	8251	.	g	t	5	q30	DP=6310;AC=27;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	8252	.	g	t	2	q30	DP=6326;AC=24;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	8269	.	c	a	10	q30	DP=8422;AC=40;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	8270	.	c	a	5	q30	DP=8388;AC=36;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	8280	.	c	a	26	q30	DP=8504;AC=50;AF=0.0059
SIVmac239M5SpXplasmid_reference_1269-10407	8281	.	c	a	92	PASS	DP=8483;AC=73;AF=0.0086
SIVmac239M5SpXplasmid_reference_1269-10407	8282	.	c	a	13	q30	DP=8583;AC=43;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	8285	.	c	a	3	q30	DP=8695;AC=34;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	8286	.	t	g	1	q30	DP=8709;AC=29;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	8302	.	t	g	20	q30	DP=8981;AC=49;AF=0.0055
SIVmac239M5SpXplasmid_reference_1269-10407	8322	.	t	g	49	PASS	DP=9374;AC=64;AF=0.0068
SIVmac239M5SpXplasmid_reference_1269-10407	8324	.	t	g	3	q30	DP=9310;AC=37;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	8328	.	t	a	5	q30	DP=9513;AC=40;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	8328	.	t	g	14	q30	DP=9513;AC=48;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	8333	.	t	g	2	q30	DP=10757;AC=40;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	8337	.	t	a	1	q30	DP=10615;AC=36;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	8344	.	g	t	5	q30	DP=9531;AC=40;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	8346	.	t	a	1	q30	DP=9523;AC=34;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	8346	.	t	g	10	q30	DP=9523;AC=45;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	8349	.	t	g	1	q30	DP=9468;AC=34;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	8350	.	g	t	7	q30	DP=9450;AC=42;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	8352	.	c	a	8	q30	DP=9591;AC=43;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	8353	.	t	g	65	PASS	DP=9401;AC=70;AF=0.0074
SIVmac239M5SpXplasmid_reference_1269-10407	8355	.	g	t	1	q30	DP=9464;AC=33;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	8359	.	g	t	6	q30	DP=9447;AC=41;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	8360	.	g	t	18	q30	DP=9705;AC=51;AF=0.0053
SIVmac239M5SpXplasmid_reference_1269-10407	8361	.	g	a	33	PASS	DP=9663;AC=59;AF=0.0061
SIVmac239M5SpXplasmid_reference_1269-10407	8361	.	g	t	9	q30	DP=9663;AC=45;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	8365	.	t	a	1	q30	DP=9716;AC=35;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	8365	.	t	g	1	q30	DP=9716;AC=35;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	8366	.	c	a	7	q30	DP=9719;AC=43;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	8372	.	g	t	5	q30	DP=9157;AC=38;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	8374	.	c	a	21	q30	DP=9200;AC=51;AF=0.0055
SIVmac239M5SpXplasmid_reference_1269-10407	8375	.	c	a	99	PASS	DP=9182;AC=79;AF=0.0086
SIVmac239M5SpXplasmid_reference_1269-10407	8382	.	t	a	8	q30	DP=9150;AC=42;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	8383	.	c	a	51	PASS	DP=9215;AC=64;AF=0.0069
SIVmac239M5SpXplasmid_reference_1269-10407	8384	.	c	a	95	PASS	DP=9236;AC=78;AF=0.0084
SIVmac239M5SpXplasmid_reference_1269-10407	8385	.	c	a	73	PASS	DP=9489;AC=73;AF=0.0077
SIVmac239M5SpXplasmid_reference_1269-10407	8386	.	c	a	9	q30	DP=9507;AC=44;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	8393	.	c	a	16	q30	DP=9758;AC=50;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	8398	.	a	g	1	q30	DP=9804;AC=33;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	8401	.	t	a	2	q30	DP=9863;AC=37;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	8401	.	t	g	58	PASS	DP=9863;AC=70;AF=0.0071
SIVmac239M5SpXplasmid_reference_1269-10407	8403	.	c	a	2	q30	DP=9895;AC=36;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	8407	.	t	a	1	q30	DP=9657;AC=33;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	8407	.	t	g	31	PASS	DP=9657;AC=58;AF=0.0060
SIVmac239M5SpXplasmid_reference_1269-10407	8411	.	c	a	14	q30	DP=10008;AC=50;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	8423	.	c	a	13	q30	DP=9987;AC=49;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	8424	.	t	a	1	q30	DP=9891;AC=33;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	8425	.	c	a	26	q30	DP=9789;AC=56;AF=0.0057
SIVmac239M5SpXplasmid_reference_1269-10407	8435	.	a	c	1	q30	DP=9814;AC=35;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	8443	.	g	t	14	q30	DP=10047;AC=50;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	8444	.	g	t	31	PASS	DP=10053;AC=60;AF=0.0060
SIVmac239M5SpXplasmid_reference_1269-10407	8445	.	g	t	9	q30	DP=10021;AC=46;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	8446	.	g	t	5	q30	DP=10013;AC=42;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	8447	.	g	t	3	q30	DP=10112;AC=39;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	8449	.	c	a	5	q30	DP=10232;AC=43;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	8455	.	g	t	10	q30	DP=10337;AC=48;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	8456	.	g	a	2	q30	DP=9934;AC=38;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	8456	.	g	t	30	PASS	DP=9934;AC=59;AF=0.0059
SIVmac239M5SpXplasmid_reference_1269-10407	8459	.	t	g	1	q30	DP=10808;AC=37;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	8460	.	t	g	9	q30	DP=10973;AC=50;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	8461	.	t	g	2	q30	DP=10942;AC=40;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	8463	.	t	g	11	q30	DP=10999;AC=52;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	8470	.	g	t	2	q30	DP=10244;AC=38;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	8471	.	c	a	12	q30	DP=10287;AC=50;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	8486	.	t	a	4	q30	DP=10988;AC=45;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	8486	.	t	g	25	q30	DP=10988;AC=61;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	8488	.	t	g	20	q30	DP=10928;AC=58;AF=0.0053
SIVmac239M5SpXplasmid_reference_1269-10407	8500	.	t	g	10	q30	DP=10513;AC=49;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	8512	.	g	t	1	q30	DP=10596;AC=37;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	8515	.	g	t	9	q30	DP=10527;AC=48;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	8519	.	t	a	3	q30	DP=10511;AC=41;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	8519	.	t	g	10	q30	DP=10511;AC=49;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	8522	.	t	g	1	q30	DP=10690;AC=36;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	8525	.	c	a	4	q30	DP=10578;AC=43;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	8529	.	t	g	15	q30	DP=10358;AC=52;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	8531	.	g	t	1	q30	DP=9871;AC=35;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	8533	.	c	a	1	q30	DP=9881;AC=33;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	8535	.	g	t	1	q30	DP=9940;AC=35;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	8544	.	c	a	14	q30	DP=9931;AC=50;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	8545	.	t	g	16	q30	DP=9739;AC=50;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	8546	.	c	a	5	q30	DP=9771;AC=41;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	8551	.	c	a	6	q30	DP=9761;AC=42;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	8552	.	c	a	9	q30	DP=9540;AC=44;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	8558	.	t	g	13	q30	DP=9631;AC=48;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	8565	.	c	a	4	q30	DP=9292;AC=38;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	8566	.	c	a	29	q30	DP=9242;AC=55;AF=0.0060
SIVmac239M5SpXplasmid_reference_1269-10407	8567	.	c	a	41	PASS	DP=9218;AC=60;AF=0.0065
SIVmac239M5SpXplasmid_reference_1269-10407	8575	.	t	g	99	PASS	DP=9017;AC=78;AF=0.0087
SIVmac239M5SpXplasmid_reference_1269-10407	8576	.	t	g	57	PASS	DP=9008;AC=65;AF=0.0072
SIVmac239M5SpXplasmid_reference_1269-10407	8590	.	a	c	1	q30	DP=8986;AC=32;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	8591	.	a	c	1	q30	DP=8921;AC=32;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	8593	.	t	g	2	q30	DP=8832;AC=32;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	8597	.	t	g	1	q30	DP=8662;AC=30;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	8598	.	c	a	9	q30	DP=8649;AC=40;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	8599	.	c	a	41	PASS	DP=8400;AC=56;AF=0.0067
SIVmac239M5SpXplasmid_reference_1269-10407	8600	.	c	a	13	q30	DP=8564;AC=43;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	8611	.	t	a	1	q30	DP=7895;AC=27;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	8611	.	t	g	6	q30	DP=7895;AC=35;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	8617	.	g	t	1	q30	DP=7422;AC=25;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	8619	.	g	t	9	q30	DP=7385;AC=35;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	8621	.	c	a	7	q30	DP=7384;AC=33;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	8625	.	g	t	1	q30	DP=7305;AC=26;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	8629	.	g	t	3	q30	DP=7010;AC=27;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	8630	.	a	t	1	q30	DP=7020;AC=25;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	8633	.	a	g	2	q30	DP=6886;AC=26;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	8634	.	g	t	2	q30	DP=6622;AC=25;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	8635	.	g	t	4	q30	DP=6641;AC=27;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	8637	.	g	t	4	q30	DP=6580;AC=27;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	8640	.	t	g	1	q30	DP=6478;AC=22;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	8641	.	t	g	3	q30	DP=6422;AC=26;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	8643	.	t	g	11	q30	DP=6567;AC=33;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	8644	.	t	g	1	q30	DP=6475;AC=21;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	8645	.	t	g	8	q30	DP=6453;AC=30;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	8652	.	t	g	1	q30	DP=5094;AC=17;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	8653	.	c	a	4	q30	DP=5094;AC=21;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	8654	.	c	a	3	q30	DP=5092;AC=20;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	8656	.	g	t	1	q30	DP=4974;AC=16;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	8657	.	c	a	2	q30	DP=4898;AC=18;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	8658	.	t	a	1	q30	DP=4825;AC=16;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	8658	.	t	g	1	q30	DP=4825;AC=16;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	8659	.	c	a	4	q30	DP=4828;AC=20;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	8663	.	c	a	6	q30	DP=4780;AC=22;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	8664	.	t	a	1	q30	DP=4688;AC=15;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	8664	.	t	g	73	PASS	DP=4688;AC=45;AF=0.0096
SIVmac239M5SpXplasmid_reference_1269-10407	8665	.	t	g	5	q30	DP=4699;AC=21;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	8666	.	c	a	11	q30	DP=4696;AC=25;AF=0.0053
SIVmac239M5SpXplasmid_reference_1269-10407	8667	.	c	a	8	q30	DP=4699;AC=23;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	8668	.	c	a	16	q30	DP=4638;AC=27;AF=0.0058
SIVmac239M5SpXplasmid_reference_1269-10407	8670	.	g	t	1	q30	DP=4637;AC=15;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	8671	.	t	a	4	q30	DP=4617;AC=19;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	8671	.	t	g	4	q30	DP=4617;AC=19;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	8672	.	g	t	14	q30	DP=4592;AC=26;AF=0.0057
SIVmac239M5SpXplasmid_reference_1269-10407	8673	.	g	t	9	q30	DP=4620;AC=23;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	8674	.	g	t	4	q30	DP=4596;AC=19;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	8676	.	t	g	5	q30	DP=4557;AC=20;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	8677	.	g	t	1	q30	DP=4535;AC=15;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	8679	.	c	a	18	q30	DP=4622;AC=28;AF=0.0061
SIVmac239M5SpXplasmid_reference_1269-10407	8680	.	c	a	9	q30	DP=4606;AC=23;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	8680	.	c	g	7	q30	DP=4606;AC=22;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	8681	.	c	a	19	q30	DP=4586;AC=28;AF=0.0061
SIVmac239M5SpXplasmid_reference_1269-10407	8682	.	t	a	1	q30	DP=4564;AC=15;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	8682	.	t	g	19	q30	DP=4564;AC=28;AF=0.0061
SIVmac239M5SpXplasmid_reference_1269-10407	8683	.	t	g	3	q30	DP=4552;AC=18;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	8684	.	g	t	9	q30	DP=4562;AC=23;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	8685	.	g	t	4	q30	DP=4474;AC=19;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	8686	.	g	t	23	q30	DP=4469;AC=29;AF=0.0065
SIVmac239M5SpXplasmid_reference_1269-10407	8687	.	g	t	2	q30	DP=4444;AC=17;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	8688	.	a	g	18	q30	DP=4244;AC=26;AF=0.0061
SIVmac239M5SpXplasmid_reference_1269-10407	8690	.	a	g	1	q30	DP=4207;AC=14;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	8694	.	t	g	2	q30	DP=4310;AC=16;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	8695	.	c	a	13	q30	DP=4310;AC=24;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	8699	.	c	a	2	q30	DP=4283;AC=16;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	8701	.	t	g	6	q30	DP=4038;AC=19;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	8702	.	g	t	3	q30	DP=4038;AC=16;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	8703	.	g	t	1	q30	DP=4030;AC=14;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	8705	.	a	c	7	q30	DP=4097;AC=20;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	8707	.	t	g	2	q30	DP=4075;AC=15;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	8708	.	t	g	8	q30	DP=4063;AC=20;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	8711	.	a	g	19	q30	DP=4113;AC=26;AF=0.0063
SIVmac239M5SpXplasmid_reference_1269-10407	8711	.	a	t	3	q30	DP=4113;AC=16;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	8712	.	t	a	1	q30	DP=4110;AC=13;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	8712	.	t	g	51	PASS	DP=4110;AC=36;AF=0.0088
SIVmac239M5SpXplasmid_reference_1269-10407	8713	.	c	a	17	q30	DP=4111;AC=25;AF=0.0061
SIVmac239M5SpXplasmid_reference_1269-10407	8714	.	c	a	34	PASS	DP=4096;AC=31;AF=0.0076
SIVmac239M5SpXplasmid_reference_1269-10407	8716	.	a	t	1	q30	DP=4128;AC=13;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	8717	.	c	a	7	q30	DP=4119;AC=20;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	8718	.	t	g	75	PASS	DP=4119;AC=42;AF=0.0102
SIVmac239M5SpXplasmid_reference_1269-10407	8719	.	c	a	2	q30	DP=4112;AC=15;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	8720	.	t	g	1	q30	DP=4034;AC=14;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	8721	.	g	t	3	q30	DP=4139;AC=17;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	8723	.	c	a	14	q30	DP=4163;AC=24;AF=0.0058
SIVmac239M5SpXplasmid_reference_1269-10407	8724	.	c	a	12	q30	DP=4172;AC=23;AF=0.0055
SIVmac239M5SpXplasmid_reference_1269-10407	8725	.	t	g	20	q30	DP=4111;AC=26;AF=0.0063
SIVmac239M5SpXplasmid_reference_1269-10407	8727	.	c	a	23	q30	DP=4222;AC=28;AF=0.0066
SIVmac239M5SpXplasmid_reference_1269-10407	8728	.	a	t	1	q30	DP=4222;AC=14;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	8729	.	c	a	3	q30	DP=4447;AC=18;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	8730	.	t	g	34	PASS	DP=4272;AC=32;AF=0.0075
SIVmac239M5SpXplasmid_reference_1269-10407	8731	.	t	g	4	q30	DP=4287;AC=18;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	8733	.	t	g	13	q30	DP=4273;AC=24;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	8735	.	a	g	2	q30	DP=4204;AC=16;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	8736	.	g	t	8	q30	DP=4219;AC=21;AF=0.0050
SIVmac239M5SpXplasmid_reference_1269-10407	8738	.	c	a	37	PASS	DP=4107;AC=32;AF=0.0078
SIVmac239M5SpXplasmid_reference_1269-10407	8740	.	t	g	11	q30	DP=4116;AC=22;AF=0.0053
SIVmac239M5SpXplasmid_reference_1269-10407	8742	.	t	a	4	q30	DP=4237;AC=18;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	8742	.	t	g	10	q30	DP=4237;AC=22;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	8744	.	t	g	6	q30	DP=4272;AC=20;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	8745	.	t	g	8	q30	DP=4267;AC=21;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	8748	.	a	g	3	q30	DP=4215;AC=17;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	8749	.	t	a	4	q30	DP=4202;AC=18;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	8749	.	t	g	53	PASS	DP=4202;AC=37;AF=0.0088
SIVmac239M5SpXplasmid_reference_1269-10407	8751	.	c	a	36	PASS	DP=4166;AC=32;AF=0.0077
SIVmac239M5SpXplasmid_reference_1269-10407	8752	.	c	a	45	PASS	DP=4039;AC=34;AF=0.0084
SIVmac239M5SpXplasmid_reference_1269-10407	8752	.	c	g	1	q30	DP=4039;AC=13;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	8752	.	c	t	6	q30	DP=4039;AC=19;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	8753	.	c	a	23	q30	DP=4040;AC=27;AF=0.0067
SIVmac239M5SpXplasmid_reference_1269-10407	8756	.	a	c	10	q30	DP=4014;AC=21;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	8756	.	a	g	5	q30	DP=4014;AC=18;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	8757	.	a	c	3	q30	DP=4018;AC=16;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	8758	.	g	t	2	q30	DP=4022;AC=15;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	8759	.	a	c	1	q30	DP=3950;AC=14;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	8759	.	a	g	5	q30	DP=3950;AC=18;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	8759	.	a	t	1	q30	DP=3950;AC=14;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	8761	.	t	g	63	PASS	DP=3936;AC=38;AF=0.0097
SIVmac239M5SpXplasmid_reference_1269-10407	8762	.	t	g	100	PASS	DP=3940;AC=51;AF=0.0129
SIVmac239M5SpXplasmid_reference_1269-10407	8763	.	t	g	1	q30	DP=3937;AC=13;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	8764	.	g	t	1	q30	DP=3925;AC=13;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	8765	.	g	t	9	q30	DP=3901;AC=20;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	8769	.	c	a	29	q30	DP=3850;AC=28;AF=0.0073
SIVmac239M5SpXplasmid_reference_1269-10407	8772	.	g	t	2	q30	DP=3905;AC=15;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	8773	.	t	a	1	q30	DP=3898;AC=13;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	8773	.	t	g	73	PASS	DP=3898;AC=40;AF=0.0103
SIVmac239M5SpXplasmid_reference_1269-10407	8774	.	c	a	6	q30	DP=3899;AC=18;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	8776	.	g	t	2	q30	DP=3906;AC=15;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	8778	.	c	a	6	q30	DP=3897;AC=18;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	8779	.	c	a	9	q30	DP=3889;AC=20;AF=0.0051
SIVmac239M5SpXplasmid_reference_1269-10407	8780	.	t	g	5	q30	DP=3812;AC=17;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	8782	.	t	a	3	q30	DP=3857;AC=15;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	8782	.	t	g	57	PASS	DP=3857;AC=36;AF=0.0093
SIVmac239M5SpXplasmid_reference_1269-10407	8783	.	c	a	15	q30	DP=3876;AC=23;AF=0.0059
SIVmac239M5SpXplasmid_reference_1269-10407	8787	.	g	t	6	q30	DP=3847;AC=18;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	8791	.	g	t	3	q30	DP=3728;AC=15;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	8792	.	a	g	5	q30	DP=3706;AC=17;AF=0.0046
SIVmac239M5SpXplasmid_reference_1269-10407	8793	.	g	t	5	q30	DP=3791;AC=17;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	8795	.	t	a	2	q30	DP=3759;AC=14;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	8795	.	t	g	2	q30	DP=3759;AC=14;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	8796	.	t	a	3	q30	DP=3750;AC=15;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	8796	.	t	g	19	q30	DP=3750;AC=24;AF=0.0064
SIVmac239M5SpXplasmid_reference_1269-10407	8802	.	a	g	1	q30	DP=3435;AC=12;AF=0.0035
SIVmac239M5SpXplasmid_reference_1269-10407	8804	.	g	a	3	q30	DP=3431;AC=14;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	8806	.	c	a	6	q30	DP=3426;AC=16;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	8809	.	a	g	19	q30	DP=3338;AC=22;AF=0.0066
SIVmac239M5SpXplasmid_reference_1269-10407	8809	.	a	t	1	q30	DP=3338;AC=11;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	8810	.	c	a	3	q30	DP=3371;AC=14;AF=0.0042
SIVmac239M5SpXplasmid_reference_1269-10407	8813	.	c	a	25	q30	DP=3331;AC=24;AF=0.0072
SIVmac239M5SpXplasmid_reference_1269-10407	8817	.	a	c	7	q30	DP=3292;AC=16;AF=0.0049
SIVmac239M5SpXplasmid_reference_1269-10407	8821	.	c	a	8	q30	DP=3274;AC=17;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	8822	.	t	g	9	q30	DP=3221;AC=17;AF=0.0053
SIVmac239M5SpXplasmid_reference_1269-10407	8823	.	t	g	9	q30	DP=3257;AC=17;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	8824	.	c	a	2	q30	DP=3266;AC=12;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	8825	.	t	g	1	q30	DP=3246;AC=11;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	8829	.	c	a	1	q30	DP=3194;AC=10;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	8830	.	a	c	1	q30	DP=3052;AC=10;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	8831	.	t	g	5	q30	DP=3010;AC=14;AF=0.0047
SIVmac239M5SpXplasmid_reference_1269-10407	8832	.	g	t	1	q30	DP=2903;AC=9;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	8834	.	c	a	8	q30	DP=2896;AC=15;AF=0.0052
SIVmac239M5SpXplasmid_reference_1269-10407	8835	.	t	g	10	q30	DP=2836;AC=16;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	8838	.	c	a	11	q30	DP=2810;AC=16;AF=0.0057
SIVmac239M5SpXplasmid_reference_1269-10407	8846	.	a	t	1	q30	DP=2696;AC=9;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	8847	.	a	c	1	q30	DP=2663;AC=8;AF=0.0030
SIVmac239M5SpXplasmid_reference_1269-10407	8847	.	a	g	2	q30	DP=2663;AC=10;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	8848	.	a	g	8	q30	DP=2660;AC=14;AF=0.0053
SIVmac239M5SpXplasmid_reference_1269-10407	8849	.	c	a	3	q30	DP=2661;AC=11;AF=0.0041
SIVmac239M5SpXplasmid_reference_1269-10407	8850	.	t	a	1	q30	DP=2619;AC=9;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	8850	.	t	g	24	q30	DP=2619;AC=20;AF=0.0076
SIVmac239M5SpXplasmid_reference_1269-10407	8853	.	c	a	1	q30	DP=2613;AC=9;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	8858	.	a	g	1	q30	DP=2590;AC=8;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	8864	.	g	t	9	q30	DP=2538;AC=14;AF=0.0055
SIVmac239M5SpXplasmid_reference_1269-10407	8865	.	g	a	4	q30	DP=2516;AC=11;AF=0.0044
SIVmac239M5SpXplasmid_reference_1269-10407	8865	.	g	t	2	q30	DP=2516;AC=9;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	8870	.	t	g	1	q30	DP=2426;AC=8;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	8872	.	c	a	4	q30	DP=2427;AC=11;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	8873	.	c	a	2	q30	DP=2415;AC=9;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	8874	.	a	c	1	q30	DP=2398;AC=8;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	8875	.	c	a	13	q30	DP=2395;AC=15;AF=0.0063
SIVmac239M5SpXplasmid_reference_1269-10407	8879	.	g	t	4	q30	DP=2241;AC=10;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	8880	.	g	t	3	q30	DP=2240;AC=9;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	8882	.	a	t	2	q30	DP=2190;AC=8;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	8885	.	t	a	2	q30	DP=2197;AC=8;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	8888	.	c	a	5	q30	DP=2069;AC=10;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	8889	.	g	t	7	q30	DP=2047;AC=11;AF=0.0054
SIVmac239M5SpXplasmid_reference_1269-10407	8890	.	g	t	1	q30	DP=2052;AC=7;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	8893	.	a	c	3	q30	DP=1861;AC=8;AF=0.0043
SIVmac239M5SpXplasmid_reference_1269-10407	8893	.	a	g	1	q30	DP=1861;AC=6;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	8896	.	t	a	1	q30	DP=1847;AC=6;AF=0.0032
SIVmac239M5SpXplasmid_reference_1269-10407	8898	.	c	a	1	q30	DP=1833;AC=6;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	8899	.	t	a	1	q30	DP=1778;AC=6;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	8899	.	t	g	2	q30	DP=1778;AC=7;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	8900	.	g	t	4	q30	DP=1769;AC=8;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	8901	.	g	t	3	q30	DP=1740;AC=7;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	8902	.	g	t	1	q30	DP=1736;AC=5;AF=0.0029
SIVmac239M5SpXplasmid_reference_1269-10407	8904	.	a	c	5	q30	DP=1448;AC=7;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	8904	.	a	g	7	q30	DP=1448;AC=8;AF=0.0055
SIVmac239M5SpXplasmid_reference_1269-10407	8906	.	g	t	7	q30	DP=1437;AC=8;AF=0.0056
SIVmac239M5SpXplasmid_reference_1269-10407	8907	.	a	c	1	q30;ac5	DP=1415;AC=4;AF=0.0028
SIVmac239M5SpXplasmid_reference_1269-10407	8910	.	c	a	2	q30	DP=1360;AC=5;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	8911	.	g	t	1	q30;ac5	DP=1340;AC=4;AF=0.0030
SIVmac239M5SpXplasmid_reference_1269-10407	8913	.	t	c	2	q30	DP=1337;AC=5;AF=0.0037
SIVmac239M5SpXplasmid_reference_1269-10407	8915	.	g	t	2	q30	DP=1324;AC=5;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	8916	.	g	t	1	q30;ac5	DP=1316;AC=4;AF=0.0030
SIVmac239M5SpXplasmid_reference_1269-10407	8918	.	a	c	1	q30;ac5	DP=1308;AC=4;AF=0.0031
SIVmac239M5SpXplasmid_reference_1269-10407	8920	.	c	a	2	q30	DP=1245;AC=5;AF=0.0040
SIVmac239M5SpXplasmid_reference_1269-10407	8920	.	c	t	4	q30	DP=1245;AC=6;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	8922	.	c	a	1	q30;ac5	DP=1208;AC=4;AF=0.0033
SIVmac239M5SpXplasmid_reference_1269-10407	8923	.	c	a	13	q30	DP=1206;AC=9;AF=0.0075
SIVmac239M5SpXplasmid_reference_1269-10407	8924	.	c	a	21	q30	DP=1202;AC=11;AF=0.0092
SIVmac239M5SpXplasmid_reference_1269-10407	8925	.	a	c	1	q30;ac5	DP=1188;AC=4;AF=0.0034
SIVmac239M5SpXplasmid_reference_1269-10407	8930	.	c	a	2	q30;ac5	DP=1102;AC=4;AF=0.0036
SIVmac239M5SpXplasmid_reference_1269-10407	8934	.	a	c	1	q30;ac5	DP=1058;AC=3;AF=0.0028
SIVmac239M5SpXplasmid_reference_1269-10407	8934	.	a	t	9	q30	DP=1058;AC=7;AF=0.0066
SIVmac239M5SpXplasmid_reference_1269-10407	8937	.	t	g	2	q30;ac5	DP=798;AC=3;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	8941	.	a	c	2	q30;ac5	DP=774;AC=3;AF=0.0039
SIVmac239M5SpXplasmid_reference_1269-10407	8942	.	a	g	1	q30;ac5	DP=760;AC=2;AF=0.0026
SIVmac239M5SpXplasmid_reference_1269-10407	8942	.	a	t	1	q30;ac5	DP=760;AC=2;AF=0.0026
SIVmac239M5SpXplasmid_reference_1269-10407	8946	.	c	a	13	q30	DP=492;AC=5;AF=0.0102
SIVmac239M5SpXplasmid_reference_1269-10407	8947	.	a	g	1	q30;ac5	DP=388;AC=1;AF=0.0026
SIVmac239M5SpXplasmid_reference_1269-10407	8948	.	c	a	1	q30;ac5	DP=387;AC=1;AF=0.0026
SIVmac239M5SpXplasmid_reference_1269-10407	8950	.	g	a	1	q30;ac5	DP=333;AC=1;AF=0.0030
SIVmac239M5SpXplasmid_reference_1269-10407	8952	.	a	t	1	q30;ac5	DP=266;AC=1;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	8953	.	t	a	2	q30;ac5	DP=260;AC=1;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	8953	.	t	g	2	q30;ac5	DP=260;AC=1;AF=0.0038
SIVmac239M5SpXplasmid_reference_1269-10407	8954	.	t	c	2	q30;ac5	DP=222;AC=1;AF=0.0045
SIVmac239M5SpXplasmid_reference_1269-10407	8956	.	c	t	2	q30;ac5	DP=210;AC=1;AF=0.0048
SIVmac239M5SpXplasmid_reference_1269-10407	8959	.	t	g	5	q30;ac5;dp100	DP=92;AC=1;AF=0.0109
SIVmac239M5SpXplasmid_reference_1269-10407	8963	.	t	a	100	dp100	DP=63;AC=15;AF=0.2381
SIVmac239M5SpXplasmid_reference_1269-10407	8965	.	t	g	6	q30;ac5;dp100	DP=64;AC=1;AF=0.0156
SIVmac239M5SpXplasmid_reference_1269-10407	8966	.	t	a	100	dp100	DP=62;AC=16;AF=0.2581
SIVmac239M5SpXplasmid_reference_1269-10407	8967	.	c	a	6	q30;ac5;dp100	DP=64;AC=1;AF=0.0156
SIVmac239M5SpXplasmid_reference_1269-10407	8968	.	a	t	6	q30;ac5;dp100	DP=64;AC=1;AF=0.0156
SIVmac239M5SpXplasmid_reference_1269-10407	8972	.	g	c	7	q30;ac5;dp100	DP=47;AC=1;AF=0.0213
SIVmac239M5SpXplasmid_reference_1269-10407	8973	.	c	a	7	q30;ac5;dp100	DP=48;AC=1;AF=0.0208
SIVmac239M5SpXplasmid_reference_1269-10407	8976	.	t	a	7	q30;ac5;dp100	DP=48;AC=1;AF=0.0208
SIVmac239M5SpXplasmid_reference_1269-10407	8978	.	c	a	7	q30;ac5;dp100	DP=48;AC=1;AF=0.0208
SIVmac239M5SpXplasmid_reference_1269-10407	8980	.	g	c	7	q30;ac5;dp100	DP=48;AC=1;AF=0.0208
SIVmac239M5SpXplasmid_reference_1269-10407	8981	.	a	t	7	q30;ac5;dp100	DP=48;AC=1;AF=0.0208
SIVmac239M5SpXplasmid_reference_1269-10407	8983	.	a	g	7	q30;ac5;dp100	DP=50;AC=1;AF=0.0200
SIVmac239M5SpXplasmid_reference_1269-10407	8986	.	c	a	7	q30;ac5;dp100	DP=50;AC=1;AF=0.0200
SIVmac239M5SpXplasmid_reference_1269-10407	8988	.	g	t	7	q30;ac5;dp100	DP=51;AC=1;AF=0.0196
SIVmac239M5SpXplasmid_reference_1269-10407	8990	.	c	a	7	q30;ac5;dp100	DP=51;AC=1;AF=0.0196
SIVmac239M5SpXplasmid_reference_1269-10407	8994	.	t	g	7	q30;ac5;dp100	DP=50;AC=1;AF=0.0200
SIVmac239M5SpXplasmid_reference_1269-10407	8995	.	t	c	7	q30;ac5;dp100	DP=50;AC=1;AF=0.0200
SIVmac239M5SpXplasmid_reference_1269-10407	8996	.	g	t	7	q30;ac5;dp100	DP=50;AC=1;AF=0.0200
SIVmac239M5SpXplasmid_reference_1269-10407	8999	.	c	a	7	q30;ac5;dp100	DP=50;AC=1;AF=0.0200
SIVmac239M5SpXplasmid_reference_1269-10407	9002	.	t	c	7	q30;ac5;dp100	DP=50;AC=1;AF=0.0200
SIVmac239M5SpXplasmid_reference_1269-10407	9003	.	g	a	7	q30;ac5;dp100	DP=50;AC=1;AF=0.0200
SIVmac239M5SpXplasmid_reference_1269-10407	9005	.	g	c	7	q30;ac5;dp100	DP=50;AC=1;AF=0.0200
SIVmac239M5SpXplasmid_reference_1269-10407	9005	.	g	t	17	q30;ac5;dp100	DP=50;AC=2;AF=0.0400
SIVmac239M5SpXplasmid_reference_1269-10407	9010	.	t	c	7	q30;ac5;dp100	DP=49;AC=1;AF=0.0204
SIVmac239M5SpXplasmid_reference_1269-10407	9010	.	t	g	7	q30;ac5;dp100	DP=49;AC=1;AF=0.0204
SIVmac239M5SpXplasmid_reference_1269-10407	9011	.	c	t	18	q30;ac5;dp100	DP=49;AC=2;AF=0.0408
SIVmac239M5SpXplasmid_reference_1269-10407	9013	.	c	a	18	q30;ac5;dp100	DP=49;AC=2;AF=0.0408
SIVmac239M5SpXplasmid_reference_1269-10407	9015	.	c	a	7	q30;ac5;dp100	DP=49;AC=1;AF=0.0204
SIVmac239M5SpXplasmid_reference_1269-10407	9020	.	a	t	18	q30;ac5;dp100	DP=47;AC=2;AF=0.0426
SIVmac239M5SpXplasmid_reference_1269-10407	9024	.	g	t	7	q30;ac5;dp100	DP=47;AC=1;AF=0.0213
SIVmac239M5SpXplasmid_reference_1269-10407	9026	.	a	c	8	q30;ac5;dp100	DP=44;AC=1;AF=0.0227
SIVmac239M5SpXplasmid_reference_1269-10407	9030	.	a	g	18	q30;ac5;dp100	DP=45;AC=2;AF=0.0444
SIVmac239M5SpXplasmid_reference_1269-10407	9033	.	g	t	7	q30;ac5;dp100	DP=46;AC=1;AF=0.0217
SIVmac239M5SpXplasmid_reference_1269-10407	9038	.	g	a	7	q30;ac5;dp100	DP=50;AC=1;AF=0.0200
SIVmac239M5SpXplasmid_reference_1269-10407	9039	.	g	t	7	q30;ac5;dp100	DP=50;AC=1;AF=0.0200
SIVmac239M5SpXplasmid_reference_1269-10407	9040	.	t	c	7	q30;ac5;dp100	DP=50;AC=1;AF=0.0200
SIVmac239M5SpXplasmid_reference_1269-10407	9041	.	g	a	18	q30;ac5;dp100	DP=48;AC=2;AF=0.0417
SIVmac239M5SpXplasmid_reference_1269-10407	9042	.	t	c	7	q30;ac5;dp100	DP=47;AC=1;AF=0.0213
SIVmac239M5SpXplasmid_reference_1269-10407	9043	.	t	g	7	q30;ac5;dp100	DP=47;AC=1;AF=0.0213
SIVmac239M5SpXplasmid_reference_1269-10407	9045	.	c	t	7	q30;ac5;dp100	DP=47;AC=1;AF=0.0213
SIVmac239M5SpXplasmid_reference_1269-10407	9046	.	c	a	7	q30;ac5;dp100	DP=48;AC=1;AF=0.0208
SIVmac239M5SpXplasmid_reference_1269-10407	9049	.	c	g	7	q30;ac5;dp100	DP=49;AC=1;AF=0.0204
SIVmac239M5SpXplasmid_reference_1269-10407	9055	.	t	c	7	q30;ac5;dp100	DP=49;AC=1;AF=0.0204
SIVmac239M5SpXplasmid_reference_1269-10407	9056	.	c	a	18	q30;ac5;dp100	DP=49;AC=2;AF=0.0408
SIVmac239M5SpXplasmid_reference_1269-10407	9058	.	c	g	7	q30;ac5;dp100	DP=47;AC=1;AF=0.0213
SIVmac239M5SpXplasmid_reference_1269-10407	9059	.	a	c	7	q30;ac5;dp100	DP=46;AC=1;AF=0.0217
SIVmac239M5SpXplasmid_reference_1269-10407	9060	.	c	a	7	q30;ac5;dp100	DP=46;AC=1;AF=0.0217
SIVmac239M5SpXplasmid_reference_1269-10407	9061	.	c	t	7	q30;ac5;dp100	DP=46;AC=1;AF=0.0217
SIVmac239M5SpXplasmid_reference_1269-10407	9063	.	g	t	8	q30;ac5;dp100	DP=44;AC=1;AF=0.0227
SIVmac239M5SpXplasmid_reference_1269-10407	9064	.	c	a	8	q30;ac5;dp100	DP=44;AC=1;AF=0.0227
SIVmac239M5SpXplasmid_reference_1269-10407	9066	.	c	a	8	q30;ac5;dp100	DP=44;AC=1;AF=0.0227
SIVmac239M5SpXplasmid_reference_1269-10407	9070	.	g	a	8	q30;ac5;dp100	DP=44;AC=1;AF=0.0227
SIVmac239M5SpXplasmid_reference_1269-10407	9071	.	c	a	8	q30;ac5;dp100	DP=44;AC=1;AF=0.0227
SIVmac239M5SpXplasmid_reference_1269-10407	9072	.	c	t	8	q30;ac5;dp100	DP=45;AC=1;AF=0.0222
SIVmac239M5SpXplasmid_reference_1269-10407	9073	.	g	c	8	q30;ac5;dp100	DP=45;AC=1;AF=0.0222
SIVmac239M5SpXplasmid_reference_1269-10407	9078	.	t	a	8	q30;ac5;dp100	DP=44;AC=1;AF=0.0227
SIVmac239M5SpXplasmid_reference_1269-10407	9078	.	t	g	8	q30;ac5;dp100	DP=44;AC=1;AF=0.0227
SIVmac239M5SpXplasmid_reference_1269-10407	9089	.	a	t	9	q30;ac5;dp100	DP=35;AC=1;AF=0.0286
SIVmac239M5SpXplasmid_reference_1269-10407	9094	.	a	t	9	q30;ac5;dp100	DP=35;AC=1;AF=0.0286
SIVmac239M5SpXplasmid_reference_1269-10407	9098	.	t	c	9	q30;ac5;dp100	DP=33;AC=1;AF=0.0303
SIVmac239M5SpXplasmid_reference_1269-10407	9103	.	t	g	9	q30;ac5;dp100	DP=33;AC=1;AF=0.0303
SIVmac239M5SpXplasmid_reference_1269-10407	9104	.	g	t	9	q30;ac5;dp100	DP=33;AC=1;AF=0.0303
SIVmac239M5SpXplasmid_reference_1269-10407	9108	.	a	c	9	q30;ac5;dp100	DP=33;AC=1;AF=0.0303
SIVmac239M5SpXplasmid_reference_1269-10407	9110	.	a	c	9	q30;ac5;dp100	DP=33;AC=1;AF=0.0303
SIVmac239M5SpXplasmid_reference_1269-10407	9125	.	a	c	9	q30;ac5;dp100	DP=32;AC=1;AF=0.0312
SIVmac239M5SpXplasmid_reference_1269-10407	9126	.	g	a	9	q30;ac5;dp100	DP=32;AC=1;AF=0.0312
SIVmac239M5SpXplasmid_reference_1269-10407	9128	.	t	a	9	q30;ac5;dp100	DP=31;AC=1;AF=0.0323