Mercurial > repos > nml > spades_fasta_header_fixer

diff spades_header_fixer.xml @ 2:2cc9e69419d2 draft default tip

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planemo upload for repository https://github.com/phac-nml/galaxy_tools commit c32ec4a9284ec939d001bd7d7d551c15feaa5333
author nml
date Mon, 07 Nov 2022 23:41:29 +0000
parents 4a80a8ffb288
children
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--- a/spades_header_fixer.xml	Fri Sep 02 20:18:41 2022 +0000
+++ b/spades_header_fixer.xml	Mon Nov 07 23:41:29 2022 +0000
@@ -1,9 +1,9 @@
-<tool id="spades_header_fixer" name="SPAdes fasta header fixer" version="1.1.2+galaxy0">
+<tool id="spades_header_fixer" name="SPAdes fasta header fixer" version="1.1.2+galaxy1">
 	<description>Fixes Spades Fasta ids</description>
   <requirements>
       <requirement type="package" version="4.7.0">sed</requirement>
   </requirements>
-  <command >sed -r "s/>NODE(_[0-9]+)_(.*)|>contig/>${input.element_identifier}\1 \2/g" $input >$output</command>
+  <command >sed -r "s/>NODE(_[0-9]+)_(.*)|>contig/>${input.element_identifier}\1_\2/g" $input >$output</command>
 	<inputs>
 		<param name="input" type="data" format="fasta" label="Fix these fasta headers"/>
 		</inputs>