Mercurial > repos > nml > staramr

annotate test-data/test1-detailed-summary.tsv @ 7:f1adc47e017a draft

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planemo upload for repository https://github.com/phac-nml/staramr commit dad82f0ddadb5e106a54d5aa6609918325e49d23
author nml
date Thu, 16 May 2019 15:29:53 -0400
parents 3c09557ac425
children 61a3e97aa865
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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7
f1adc47e017a planemo upload for repository https://github.com/phac-nml/staramr commit dad82f0ddadb5e106a54d5aa6609918325e49d23
nml
parents: 6
diff changeset
1 Isolate ID Gene/Plasmid Predicted Phenotype %Identity %Overlap HSP Length/Total Length Contig Start End Accession Data Type
6
3c09557ac425 planemo upload for repository https://github.com/phac-nml/staramr commit 52535d98ad1e03c83c93f230abf966613b4b8fa2
nml
parents:
diff changeset
2 16S-rc_gyrA-rc_beta-lactam.fsa None Plasmid
3c09557ac425 planemo upload for repository https://github.com/phac-nml/staramr commit 52535d98ad1e03c83c93f230abf966613b4b8fa2
nml
parents:
diff changeset
3 16S-rc_gyrA-rc_beta-lactam.fsa 16S_rrsD (C1065T) spectinomycin 99.94 100.0 1544/1544 16S_rrsD 1604 61 Resistance
3c09557ac425 planemo upload for repository https://github.com/phac-nml/staramr commit 52535d98ad1e03c83c93f230abf966613b4b8fa2
nml
parents:
diff changeset
4 16S-rc_gyrA-rc_beta-lactam.fsa blaIMP-42 ampicillin, amoxicillin/clavulanic acid, cefoxitin, ceftriaxone, meropenem 99.73 100.0 741/741 16S_rrsD 4381 5121 AB753456 Resistance
3c09557ac425 planemo upload for repository https://github.com/phac-nml/staramr commit 52535d98ad1e03c83c93f230abf966613b4b8fa2
nml
parents:
diff changeset
5 16S-rc_gyrA-rc_beta-lactam.fsa gyrA (A67P) ciprofloxacin I/R, nalidixic acid 99.96 100.0 2637/2637 16S_rrsD 4317 1681 Resistance