Mercurial > repos > nml > staramr

annotate test-data/test1-pointfinder.tsv @ 18:3b22de20bd4b draft default tip

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planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/staramr commit 1a2d7c4c5b7c0d3aac10d1d5fbd8d33550f840ed
author nml
date Tue, 19 Sep 2023 18:41:35 +0000
parents 141afacabcfa
children
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141afacabcfa planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/staramr commit e752f6e09372d3513de79d85baa619c5f5065303
nml
parents: 16
diff changeset
1 Isolate ID Gene Predicted Phenotype CGE Predicted Phenotype Type Position Mutation %Identity %Overlap HSP Length/Total Length Contig Start End Pointfinder Position CGE Notes CGE Required Mutation CGE Mechanism CGE PMID
141afacabcfa planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/staramr commit e752f6e09372d3513de79d85baa619c5f5065303
nml
parents: 16
diff changeset
2 16S-rc_gyrA-rc_beta-lactam.fsa 16S_rrsD (C1065T) spectinomycin Spectinomycin nucleotide 1065 C -> T 99.94 100.00 1544/1544 16S_rrsD 1604 61 C1065T Target modification 12402084
141afacabcfa planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/staramr commit e752f6e09372d3513de79d85baa619c5f5065303
nml
parents: 16
diff changeset
3 16S-rc_gyrA-rc_beta-lactam.fsa gyrA (A67P) ciprofloxacin I/R, nalidixic acid Nalidixic acid,Ciprofloxacin codon 67 GCC -> CCC (A -> P) 99.96 100.00 2637/2637 16S_rrsD 4317 1681 A67P gyrA_G81C.S.H.D Target modification 7492118