Mercurial > repos > nml > staramr

diff test-data/test1-detailed-summary.tsv @ 17:141afacabcfa draft

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planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/staramr commit e752f6e09372d3513de79d85baa619c5f5065303
author nml
date Thu, 31 Aug 2023 15:55:49 +0000
parents 61a3e97aa865
children
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--- a/test-data/test1-detailed-summary.tsv	Mon Nov 07 17:33:35 2022 +0000
+++ b/test-data/test1-detailed-summary.tsv	Thu Aug 31 15:55:49 2023 +0000
@@ -1,6 +1,6 @@
-Isolate ID	Data	Data Type	Predicted Phenotype	%Identity	%Overlap	HSP Length/Total Length	Contig	Start	End	Accession
-16S-rc_gyrA-rc_beta-lactam.fsa	ST- (-)	MLST								
-16S-rc_gyrA-rc_beta-lactam.fsa	None	Plasmid								
-16S-rc_gyrA-rc_beta-lactam.fsa	16S_rrsD (C1065T)	Resistance	spectinomycin	99.94	100.0	1544/1544	16S_rrsD	1604	61	
-16S-rc_gyrA-rc_beta-lactam.fsa	blaIMP-42	Resistance	ampicillin, amoxicillin/clavulanic acid, cefoxitin, ceftriaxone, meropenem	99.73	100.0	741/741	16S_rrsD	4381	5121	AB753456
-16S-rc_gyrA-rc_beta-lactam.fsa	gyrA (A67P)	Resistance	ciprofloxacin I/R, nalidixic acid	99.96	100.0	2637/2637	16S_rrsD	4317	1681	
+Isolate ID	Data	Data Type	Predicted Phenotype	CGE Predicted Phenotype	%Identity	%Overlap	HSP Length/Total Length	Contig	Start	End	Accession
+16S-rc_gyrA-rc_beta-lactam.fsa	ST- (-)	MLST									
+16S-rc_gyrA-rc_beta-lactam.fsa	None	Plasmid									
+16S-rc_gyrA-rc_beta-lactam.fsa	16S_rrsD (C1065T)	Resistance	spectinomycin	Spectinomycin	99.94	100.0	1544/1544	16S_rrsD	1604	61	
+16S-rc_gyrA-rc_beta-lactam.fsa	blaIMP-42	Resistance	ampicillin, amoxicillin/clavulanic acid, cefoxitin, ceftriaxone, meropenem	Amoxicillin, Amoxicillin+Clavulanic acid, Ampicillin, Ampicillin+Clavulanic acid, Cefepime, Cefixime, Cefotaxime, Cefoxitin, Ceftazidime, Ertapenem, Imipenem, Meropenem, Piperacillin, Piperacillin+Tazobactam	99.73	100.0	741/741	16S_rrsD	4381	5121	AB753456
+16S-rc_gyrA-rc_beta-lactam.fsa	gyrA (A67P)	Resistance	ciprofloxacin I/R, nalidixic acid	Nalidixic acid,Ciprofloxacin	99.96	100.0	2637/2637	16S_rrsD	4317	1681