Mercurial > repos > nml > staramr
diff test-data/test1-pointfinder.tsv @ 17:141afacabcfa draft
planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/staramr commit e752f6e09372d3513de79d85baa619c5f5065303
| author | nml |
|---|---|
| date | Thu, 31 Aug 2023 15:55:49 +0000 |
| parents | 4d83eccf5f81 |
| children |
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--- a/test-data/test1-pointfinder.tsv Mon Nov 07 17:33:35 2022 +0000 +++ b/test-data/test1-pointfinder.tsv Thu Aug 31 15:55:49 2023 +0000 @@ -1,3 +1,3 @@ -Isolate ID Gene Predicted Phenotype Type Position Mutation %Identity %Overlap HSP Length/Total Length Contig Start End Pointfinder Position -16S-rc_gyrA-rc_beta-lactam.fsa 16S_rrsD (C1065T) spectinomycin nucleotide 1065 C -> T 99.94 100.00 1544/1544 16S_rrsD 1604 61 C1065T -16S-rc_gyrA-rc_beta-lactam.fsa gyrA (A67P) ciprofloxacin I/R, nalidixic acid codon 67 GCC -> CCC (A -> P) 99.96 100.00 2637/2637 16S_rrsD 4317 1681 A67P +Isolate ID Gene Predicted Phenotype CGE Predicted Phenotype Type Position Mutation %Identity %Overlap HSP Length/Total Length Contig Start End Pointfinder Position CGE Notes CGE Required Mutation CGE Mechanism CGE PMID +16S-rc_gyrA-rc_beta-lactam.fsa 16S_rrsD (C1065T) spectinomycin Spectinomycin nucleotide 1065 C -> T 99.94 100.00 1544/1544 16S_rrsD 1604 61 C1065T Target modification 12402084 +16S-rc_gyrA-rc_beta-lactam.fsa gyrA (A67P) ciprofloxacin I/R, nalidixic acid Nalidixic acid,Ciprofloxacin codon 67 GCC -> CCC (A -> P) 99.96 100.00 2637/2637 16S_rrsD 4317 1681 A67P gyrA_G81C.S.H.D Target modification 7492118