Mercurial > repos > nml > staramr

view test-data/test1-pointfinder.tsv @ 18:3b22de20bd4b draft default tip

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/staramr commit 1a2d7c4c5b7c0d3aac10d1d5fbd8d33550f840ed
author nml
date Tue, 19 Sep 2023 18:41:35 +0000
parents 141afacabcfa
children
line wrap: on
line source

Isolate ID	Gene	Predicted Phenotype	CGE Predicted Phenotype	Type	Position	Mutation	%Identity	%Overlap	HSP Length/Total Length	Contig	Start	End	Pointfinder Position	CGE Notes	CGE Required Mutation	CGE Mechanism	CGE PMID
16S-rc_gyrA-rc_beta-lactam.fsa	16S_rrsD (C1065T)	spectinomycin	Spectinomycin	nucleotide	1065	C -> T	99.94	100.00	1544/1544	16S_rrsD	1604	61	C1065T			Target modification	12402084
16S-rc_gyrA-rc_beta-lactam.fsa	gyrA (A67P)	ciprofloxacin I/R, nalidixic acid	Nalidixic acid,Ciprofloxacin	codon	67	GCC -> CCC (A -> P)	99.96	100.00	2637/2637	16S_rrsD	4317	1681	A67P		gyrA_G81C.S.H.D	Target modification	7492118