Mercurial > repos > nml > staramr
changeset 8:da787fc8b740 draft
planemo upload for repository https://github.com/phac-nml/galaxy_tools/tree/master/tools/staramr commit f1641993d71fc04fadf20753a63cc72a412f4af5
| author | nml |
|---|---|
| date | Mon, 24 Jun 2019 15:21:42 -0400 |
| parents | f1adc47e017a |
| children | 61a3e97aa865 |
| files | staramr_search.xml |
| diffstat | 1 files changed, 4 insertions(+), 4 deletions(-) [+] |
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--- a/staramr_search.xml Thu May 16 15:29:53 2019 -0400 +++ b/staramr_search.xml Mon Jun 24 15:21:42 2019 -0400 @@ -12,8 +12,8 @@ #set $named_genomes = '' #for $genome in $genomes - #set $_named_genome = re.sub(r'(\s|\(|\))', '_', '"{}.fasta"'.format($genome.element_identifier)) - ln -s "$genome" $_named_genome && + #set $_named_genome = re.sub(r'(\s|\(|\)|\/)', '_', '"{}.fasta"'.format($genome.element_identifier)) + ln -s '$genome' $_named_genome && #set $named_genomes = $named_genomes + ' ' + $_named_genome #end for @@ -353,7 +353,7 @@ plasmidfinder_db_commit = 81919954cbedaff39056610ab584ab4c06011ed8 plasmidfinder_db_date = Tue, 20 Nov 2018 08:51 pointfinder_gene_drug_version = 050218 - resfinder_gene_drug_version = 050218.1 + resfinder_gene_drug_version = 050218.1 results.xlsx ```````````` @@ -363,7 +363,7 @@ BLAST Hits `````````` -The dataset collection **hits** stores fasta files of the specific blast hits. +The dataset collection **hits** stores fasta files of the specific blast hits. Galaxy wrapper written by Aaron Petkau at the National Microbiology Laboratory, Public Health Agency of Canada.