Mercurial > repos > nml > suite_snvphyl_1_2_2

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"planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 40963ccf728b0470320c5c7ffc3861fad12eec62"
author nml
date Thu, 03 Sep 2020 17:24:14 +0000
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77a9422303ce "planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 40963ccf728b0470320c5c7ffc3861fad12eec62"
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1 <?xml version="1.0" ?>
77a9422303ce "planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 40963ccf728b0470320c5c7ffc3861fad12eec62"
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2 <repositories description="A suite of tools associated with SNVphyl pipeline">
77a9422303ce "planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 40963ccf728b0470320c5c7ffc3861fad12eec62"
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3 <repository name="regex_find_replace" owner="galaxyp" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="ae8c4b2488e7"/>
77a9422303ce "planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 40963ccf728b0470320c5c7ffc3861fad12eec62"
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4 <repository name="freebayes" owner="devteam" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="ef2c525bd8cd"/>
77a9422303ce "planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 40963ccf728b0470320c5c7ffc3861fad12eec62"
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5 <repository name="bcftools_mpileup" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="f65383c7ed49"/>
77a9422303ce "planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 40963ccf728b0470320c5c7ffc3861fad12eec62"
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6 <repository name="bcftools_view" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="c4a9b38b435d"/>
77a9422303ce "planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 40963ccf728b0470320c5c7ffc3861fad12eec62"
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7 <repository name="bcftools_call" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="5801eff9ac7e"/>
77a9422303ce "planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 40963ccf728b0470320c5c7ffc3861fad12eec62"
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8 <repository name="phyml" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="2bf47d57ebb5"/>
77a9422303ce "planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 40963ccf728b0470320c5c7ffc3861fad12eec62"
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9 <repository name="smalt" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="5ba47ab90254"/>
77a9422303ce "planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 40963ccf728b0470320c5c7ffc3861fad12eec62"
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10 <repository name="filter_vcf" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="48922d9ca355"/>
77a9422303ce "planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 40963ccf728b0470320c5c7ffc3861fad12eec62"
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11 <repository name="snv_matrix" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="4d3e3d7aa0c4"/>
77a9422303ce "planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 40963ccf728b0470320c5c7ffc3861fad12eec62"
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12 <repository name="find_repeats" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="7e6be57de1a0"/>
77a9422303ce "planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 40963ccf728b0470320c5c7ffc3861fad12eec62"
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13 <repository name="vcf2snvalignment" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="d2096d0c149e"/>
77a9422303ce "planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 40963ccf728b0470320c5c7ffc3861fad12eec62"
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14 <repository name="consolidate_vcfs" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="4c249c0aebad"/>
77a9422303ce "planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 40963ccf728b0470320c5c7ffc3861fad12eec62"
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15 <repository name="bundle_collections" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="705ebd286b57"/>
77a9422303ce "planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 40963ccf728b0470320c5c7ffc3861fad12eec62"
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16 <repository name="verify_map" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="80b7566e62ec"/>
77a9422303ce "planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 40963ccf728b0470320c5c7ffc3861fad12eec62"
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17 <repository name="filter_stats" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="2fbea749a1d1"/>
77a9422303ce "planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 40963ccf728b0470320c5c7ffc3861fad12eec62"
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18 <repository name="filter_density" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="c9a43abcd993"/>
77a9422303ce "planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 40963ccf728b0470320c5c7ffc3861fad12eec62"
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19 <repository name="collapse_collections" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="90981f86000f"/>
77a9422303ce "planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 40963ccf728b0470320c5c7ffc3861fad12eec62"
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20 <repository name="positions2snv_alignment" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="1cf81ca17e9d"/>
77a9422303ce "planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 40963ccf728b0470320c5c7ffc3861fad12eec62"
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21 <repository name="positions2snv_invariant_alignment" owner="nml" toolshed="https://toolshed.g2.bx.psu.edu" changeset_revision="5dc704146cc6"/>
77a9422303ce "planemo upload for repository https://github.com/phac-nml/snvphyl-galaxy commit 40963ccf728b0470320c5c7ffc3861fad12eec62"
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22 </repositories>