annotate tool_dependencies.xml @ 2:3c91920654d3 draft

planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit fb90aafc93e5e63acfcdac4c27cfd865cdf06c5a-dirty
author nturaga
date Tue, 19 Apr 2016 12:21:45 -0400
parents d0cee75b3e2e
children 3cdf77791243
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1 <?xml version="1.0"?>
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2 <tool_dependency>
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3 <package name="libcurl" version="7.35">
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4 <repository changeset_revision="0d934b13250c" name="package_libcurl_7_35" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
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5 </package>
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6 <package name="R" version="3.2.1">
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7 <repository changeset_revision="d0bf97420fb5" name="package_r_3_2_1" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" />
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8 </package>
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9 <!-- <package name="r-getopt" version="1.20.0">
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10 <repository name="package_r_3_2_1_getopt_1_20_0" owner="bebatut" prior_installation_required="True" />
3c91920654d3 planemo upload for repository https://github.com/nitesh1989/tools-iuc/tree/methylation/tool_collections/methylation_toolkit/minfi commit fb90aafc93e5e63acfcdac4c27cfd865cdf06c5a-dirty
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11 </package> -->
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12 <package name="minfi" version="1.16.0">
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13 <install version="1.0">
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14 <actions>
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15 <action type="setup_r_environment">
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16 <package name="libcurl" version="7.35">
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17 <repository name="package_libcurl_7_35" owner="iuc" prior_installation_required="True" />
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18 </package>
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21 </package>
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66 <package>https://bioarchive.galaxyproject.org/siggenes_1.44.0.tar.gz</package>
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67 <package>https://bioarchive.galaxyproject.org/preprocessCore_1.32.0.tar.gz</package>
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68 <package>https://bioarchive.galaxyproject.org/base64_1.1.tar.gz</package>
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69 <package>https://bioarchive.galaxyproject.org/illuminaio_0.12.0.tar.gz</package>
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70 <package>https://bioarchive.galaxyproject.org/mclust_5.0.2.tar.gz</package>
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71 <package>https://bioarchive.galaxyproject.org/annotate_1.48.0.tar.gz</package>
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72 <package>https://bioarchive.galaxyproject.org/genefilter_1.52.0.tar.gz</package>
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73 <package>https://bioarchive.galaxyproject.org/Rcpp_0.12.1.tar.gz</package>
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74 <package>https://bioarchive.galaxyproject.org/plyr_1.8.3.tar.gz</package>
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75 <package>https://bioarchive.galaxyproject.org/reshape_0.8.5.tar.gz</package>
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76 <package>https://bioarchive.galaxyproject.org/quadprog_1.5-5.tar.gz</package>
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77 <package>https://bioarchive.galaxyproject.org/GEOquery_2.35.7.tar.gz</package>
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78 <package>https://bioarchive.galaxyproject.org/minfi_1.16.0.tar.gz</package>
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79 </action>
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80 </actions>
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81 </install>
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82 <readme>
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83 </readme>
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84 </package>
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85 </tool_dependency>