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comparison ITSx_db/HMMs/D.hmm @ 0:f82c70f54bd7 draft

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author okorol
date Tue, 24 Mar 2015 12:02:48 -0400
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-1:000000000000 0:f82c70f54bd7
1 HMMER3/b [3.0 | March 2010]
2 NAME 3_End_Amoebozoa_58S_end_four_long
3 LENG 45
4 ALPH DNA
5 RF no
6 CS no
7 MAP yes
8 DATE Fri Jan 20 23:03:49 2012
9 NSEQ 5
10 EFFN 3.198242
11 CKSUM 1352929219
12 STATS LOCAL MSV -8.1195 0.71934
13 STATS LOCAL VITERBI -7.8448 0.71934
14 STATS LOCAL FORWARD -3.8579 0.71934
15 HMM A C G T
16 m->m m->i m->d i->m i->i d->m d->d
17 COMPO 2.36165 1.09112 1.20867 1.30453
18 1.38629 1.38629 1.38629 1.38629
19 0.03775 3.98866 3.98866 1.46634 0.26236 0.00000 *
20 1 0.14739 3.33958 2.77542 3.23743 1 - -
21 1.38629 1.38629 1.38629 1.38629
22 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547
23 2 3.38618 0.13595 3.43760 2.79470 2 - -
24 1.38629 1.38629 1.38629 1.38629
25 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547
26 3 2.91894 3.54631 0.12180 3.44673 3 - -
27 1.38629 1.38629 1.38629 1.38629
28 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547
29 4 3.04773 2.56910 3.09744 0.18541 4 - -
30 1.38629 1.38629 1.38629 1.38629
31 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547
32 5 2.91894 3.54631 0.12180 3.44673 5 - -
33 1.38629 1.38629 1.38629 1.38629
34 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547
35 6 3.38618 0.13595 3.43760 2.79470 6 - -
36 1.38629 1.38629 1.38629 1.38629
37 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547
38 7 2.91894 3.54631 0.12180 3.44673 7 - -
39 1.38629 1.38629 1.38629 1.38629
40 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547
41 8 2.91894 3.54631 0.12180 3.44673 8 - -
42 1.38629 1.38629 1.38629 1.38629
43 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547
44 9 3.38618 0.13595 3.43760 2.79470 9 - -
45 1.38629 1.38629 1.38629 1.38629
46 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547
47 10 3.38618 0.13595 3.43760 2.79470 10 - -
48 1.38629 1.38629 1.38629 1.38629
49 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547
50 11 3.04773 2.56910 3.09744 0.18541 11 - -
51 1.38629 1.38629 1.38629 1.38629
52 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547
53 12 3.38618 0.13595 3.43760 2.79470 12 - -
54 1.38629 1.38629 1.38629 1.38629
55 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547
56 13 2.91894 3.54631 0.12180 3.44673 13 - -
57 1.38629 1.38629 1.38629 1.38629
58 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547
59 14 3.04773 2.56910 3.09744 0.18541 14 - -
60 1.38629 1.38629 1.38629 1.38629
61 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547
62 15 3.38618 0.13595 3.43760 2.79470 15 - -
63 1.38629 1.38629 1.38629 1.38629
64 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547
65 16 3.04773 2.56910 3.09744 0.18541 16 - -
66 1.38629 1.38629 1.38629 1.38629
67 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547
68 17 3.04773 2.56910 3.09744 0.18541 17 - -
69 1.38629 1.38629 1.38629 1.38629
70 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547
71 18 3.38618 0.13595 3.43760 2.79470 18 - -
72 1.38629 1.38629 1.38629 1.38629
73 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547
74 19 2.91894 3.54631 0.12180 3.44673 19 - -
75 1.38629 1.38629 1.38629 1.38629
76 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547
77 20 2.91894 3.54631 0.12180 3.44673 20 - -
78 1.38629 1.38629 1.38629 1.38629
79 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547
80 21 0.14739 3.33958 2.77542 3.23743 21 - -
81 1.38629 1.38629 1.38629 1.38629
82 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547
83 22 3.38618 0.13595 3.43760 2.79470 22 - -
84 1.38629 1.38629 1.38629 1.38629
85 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547
86 23 2.91894 3.54631 0.12180 3.44673 23 - -
87 1.38629 1.38629 1.38629 1.38629
88 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547
89 24 3.38618 0.13595 3.43760 2.79470 24 - -
90 1.38629 1.38629 1.38629 1.38629
91 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547
92 25 3.04773 2.56910 3.09744 0.18541 25 - -
93 1.38629 1.38629 1.38629 1.38629
94 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547
95 26 2.91894 3.54631 0.12180 3.44673 26 - -
96 1.38629 1.38629 1.38629 1.38629
97 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547
98 27 2.91894 3.54631 0.12180 3.44673 27 - -
99 1.38629 1.38629 1.38629 1.38629
100 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547
101 28 3.38618 0.13595 3.43760 2.79470 28 - -
102 1.38629 1.38629 1.38629 1.38629
103 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547
104 29 3.38618 0.13595 3.43760 2.79470 29 - -
105 1.38629 1.38629 1.38629 1.38629
106 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547
107 30 3.38618 0.13595 3.43760 2.79470 30 - -
108 1.38629 1.38629 1.38629 1.38629
109 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547
110 31 3.04773 2.56910 3.09744 0.18541 31 - -
111 1.38629 1.38629 1.38629 1.38629
112 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547
113 32 3.38618 0.13595 3.43760 2.79470 32 - -
114 1.38629 1.38629 1.38629 1.38629
115 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547
116 33 3.04773 2.56910 3.09744 0.18541 33 - -
117 1.38629 1.38629 1.38629 1.38629
118 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547
119 34 3.04773 2.56910 3.09744 0.18541 34 - -
120 1.38629 1.38629 1.38629 1.38629
121 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547
122 35 2.91894 3.54631 0.12180 3.44673 35 - -
123 1.38629 1.38629 1.38629 1.38629
124 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547
125 36 2.91894 3.54631 0.12180 3.44673 36 - -
126 1.38629 1.38629 1.38629 1.38629
127 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547
128 37 3.38618 0.13595 3.43760 2.79470 37 - -
129 1.38629 1.38629 1.38629 1.38629
130 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547
131 38 3.04773 2.56910 3.09744 0.18541 38 - -
132 1.38629 1.38629 1.38629 1.38629
133 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547
134 39 3.04773 2.56910 3.09744 0.18541 39 - -
135 1.38629 1.38629 1.38629 1.38629
136 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547
137 40 2.91894 3.54631 0.12180 3.44673 40 - -
138 1.38629 1.38629 1.38629 1.38629
139 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547
140 41 3.38618 0.13595 3.43760 2.79470 41 - -
141 1.38629 1.38629 1.38629 1.38629
142 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547
143 42 3.38618 0.13595 3.43760 2.79470 42 - -
144 1.38629 1.38629 1.38629 1.38629
145 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547
146 43 3.04773 2.56910 3.09744 0.18541 43 - -
147 1.38629 1.38629 1.38629 1.38629
148 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547
149 44 3.04773 2.56910 3.09744 0.18541 44 - -
150 1.38629 1.38629 1.38629 1.38629
151 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547
152 45 2.91894 3.54631 0.12180 3.44673 45 - -
153 1.38629 1.38629 1.38629 1.38629
154 0.01905 3.96996 * 1.46634 0.26236 0.00000 *
155 //
156 HMMER3/b [3.0 | March 2010]
157 NAME 3_End_Amoebozoa_58S_end_one_long
158 LENG 45
159 ALPH DNA
160 RF no
161 CS no
162 MAP yes
163 DATE Fri Jan 20 23:03:22 2012
164 NSEQ 2
165 EFFN 2.000000
166 CKSUM 2956303962
167 STATS LOCAL MSV -7.6683 0.72805
168 STATS LOCAL VITERBI -8.2257 0.72805
169 STATS LOCAL FORWARD -3.2732 0.72805
170 HMM A C G T
171 m->m m->i m->d i->m i->i d->m d->d
172 COMPO 1.92481 1.13424 1.33224 1.31474
173 1.38629 1.38629 1.38629 1.38629
174 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
175 1 2.81865 0.23582 2.88868 2.35662 1 - -
176 1.38629 1.38629 1.38629 1.38629
177 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
178 2 0.23862 2.84929 2.43386 2.70756 2 - -
179 1.38629 1.38629 1.38629 1.38629
180 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
181 3 0.23862 2.84929 2.43386 2.70756 3 - -
182 1.38629 1.38629 1.38629 1.38629
183 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
184 4 2.57915 2.25909 2.64442 0.28946 4 - -
185 1.38629 1.38629 1.38629 1.38629
186 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
187 5 2.53331 3.02441 0.20344 2.88069 5 - -
188 1.38629 1.38629 1.38629 1.38629
189 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
190 6 2.81865 0.23582 2.88868 2.35662 6 - -
191 1.38629 1.38629 1.38629 1.38629
192 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
193 7 2.53331 3.02441 0.20344 2.88069 7 - -
194 1.38629 1.38629 1.38629 1.38629
195 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
196 8 2.53331 3.02441 0.20344 2.88069 8 - -
197 1.38629 1.38629 1.38629 1.38629
198 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
199 9 2.81865 0.23582 2.88868 2.35662 9 - -
200 1.38629 1.38629 1.38629 1.38629
201 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
202 10 2.81865 0.23582 2.88868 2.35662 10 - -
203 1.38629 1.38629 1.38629 1.38629
204 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
205 11 2.57915 2.25909 2.64442 0.28946 11 - -
206 1.38629 1.38629 1.38629 1.38629
207 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
208 12 2.57915 2.25909 2.64442 0.28946 12 - -
209 1.38629 1.38629 1.38629 1.38629
210 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
211 13 2.53331 3.02441 0.20344 2.88069 13 - -
212 1.38629 1.38629 1.38629 1.38629
213 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
214 14 2.57915 2.25909 2.64442 0.28946 14 - -
215 1.38629 1.38629 1.38629 1.38629
216 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
217 15 2.81865 0.23582 2.88868 2.35662 15 - -
218 1.38629 1.38629 1.38629 1.38629
219 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
220 16 2.81865 0.23582 2.88868 2.35662 16 - -
221 1.38629 1.38629 1.38629 1.38629
222 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
223 17 2.57915 2.25909 2.64442 0.28946 17 - -
224 1.38629 1.38629 1.38629 1.38629
225 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
226 18 2.81865 0.23582 2.88868 2.35662 18 - -
227 1.38629 1.38629 1.38629 1.38629
228 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
229 19 2.53331 3.02441 0.20344 2.88069 19 - -
230 1.38629 1.38629 1.38629 1.38629
231 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
232 20 2.53331 3.02441 0.20344 2.88069 20 - -
233 1.38629 1.38629 1.38629 1.38629
234 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
235 21 0.23862 2.84929 2.43386 2.70756 21 - -
236 1.38629 1.38629 1.38629 1.38629
237 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
238 22 2.81865 0.23582 2.88868 2.35662 22 - -
239 1.38629 1.38629 1.38629 1.38629
240 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
241 23 0.23862 2.84929 2.43386 2.70756 23 - -
242 1.38629 1.38629 1.38629 1.38629
243 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
244 24 2.81865 0.23582 2.88868 2.35662 24 - -
245 1.38629 1.38629 1.38629 1.38629
246 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
247 25 2.57915 2.25909 2.64442 0.28946 25 - -
248 1.38629 1.38629 1.38629 1.38629
249 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
250 26 2.53331 3.02441 0.20344 2.88069 26 - -
251 1.38629 1.38629 1.38629 1.38629
252 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
253 27 2.53331 3.02441 0.20344 2.88069 27 - -
254 1.38629 1.38629 1.38629 1.38629
255 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
256 28 2.81865 0.23582 2.88868 2.35662 28 - -
257 1.38629 1.38629 1.38629 1.38629
258 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
259 29 2.81865 0.23582 2.88868 2.35662 29 - -
260 1.38629 1.38629 1.38629 1.38629
261 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
262 30 2.81865 0.23582 2.88868 2.35662 30 - -
263 1.38629 1.38629 1.38629 1.38629
264 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
265 31 2.81865 0.23582 2.88868 2.35662 31 - -
266 1.38629 1.38629 1.38629 1.38629
267 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
268 32 2.81865 0.23582 2.88868 2.35662 32 - -
269 1.38629 1.38629 1.38629 1.38629
270 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
271 33 2.57915 2.25909 2.64442 0.28946 33 - -
272 1.38629 1.38629 1.38629 1.38629
273 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
274 34 2.57915 2.25909 2.64442 0.28946 34 - -
275 1.38629 1.38629 1.38629 1.38629
276 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
277 35 2.53331 3.02441 0.20344 2.88069 35 - -
278 1.38629 1.38629 1.38629 1.38629
279 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
280 36 2.53331 3.02441 0.20344 2.88069 36 - -
281 1.38629 1.38629 1.38629 1.38629
282 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
283 37 2.57915 2.25909 2.64442 0.28946 37 - -
284 1.38629 1.38629 1.38629 1.38629
285 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
286 38 2.57915 2.25909 2.64442 0.28946 38 - -
287 1.38629 1.38629 1.38629 1.38629
288 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
289 39 2.57915 2.25909 2.64442 0.28946 39 - -
290 1.38629 1.38629 1.38629 1.38629
291 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
292 40 2.53331 3.02441 0.20344 2.88069 40 - -
293 1.38629 1.38629 1.38629 1.38629
294 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
295 41 2.81865 0.23582 2.88868 2.35662 41 - -
296 1.38629 1.38629 1.38629 1.38629
297 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
298 42 2.81865 0.23582 2.88868 2.35662 42 - -
299 1.38629 1.38629 1.38629 1.38629
300 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
301 43 2.57915 2.25909 2.64442 0.28946 43 - -
302 1.38629 1.38629 1.38629 1.38629
303 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
304 44 2.57915 2.25909 2.64442 0.28946 44 - -
305 1.38629 1.38629 1.38629 1.38629
306 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
307 45 2.53331 3.02441 0.20344 2.88069 45 - -
308 1.38629 1.38629 1.38629 1.38629
309 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
310 //
311 HMMER3/b [3.0 | March 2010]
312 NAME 3_End_Amoebozoa_58S_end_three_long
313 LENG 45
314 ALPH DNA
315 RF no
316 CS no
317 MAP yes
318 DATE Fri Jan 20 23:03:40 2012
319 NSEQ 3
320 EFFN 3.000000
321 CKSUM 3482197706
322 STATS LOCAL MSV -7.9368 0.72097
323 STATS LOCAL VITERBI -7.9470 0.72097
324 STATS LOCAL FORWARD -3.8220 0.72097
325 HMM A C G T
326 m->m m->i m->d i->m i->i d->m d->d
327 COMPO 2.16502 1.08740 1.26141 1.32838
328 1.38629 1.38629 1.38629 1.38629
329 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 *
330 1 3.30705 0.14631 3.36166 2.73626 1 - -
331 1.38629 1.38629 1.38629 1.38629
332 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
333 2 2.86982 3.47591 0.13017 3.36931 2 - -
334 1.38629 1.38629 1.38629 1.38629
335 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
336 3 0.15719 3.27118 2.73043 3.16274 3 - -
337 1.38629 1.38629 1.38629 1.38629
338 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
339 4 2.97980 2.52563 3.03204 0.19727 4 - -
340 1.38629 1.38629 1.38629 1.38629
341 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
342 5 2.86982 3.47591 0.13017 3.36931 5 - -
343 1.38629 1.38629 1.38629 1.38629
344 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
345 6 3.30705 0.14631 3.36166 2.73626 6 - -
346 1.38629 1.38629 1.38629 1.38629
347 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
348 7 2.86982 3.47591 0.13017 3.36931 7 - -
349 1.38629 1.38629 1.38629 1.38629
350 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
351 8 0.15719 3.27118 2.73043 3.16274 8 - -
352 1.38629 1.38629 1.38629 1.38629
353 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
354 9 3.30705 0.14631 3.36166 2.73626 9 - -
355 1.38629 1.38629 1.38629 1.38629
356 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
357 10 3.30705 0.14631 3.36166 2.73626 10 - -
358 1.38629 1.38629 1.38629 1.38629
359 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
360 11 2.97980 2.52563 3.03204 0.19727 11 - -
361 1.38629 1.38629 1.38629 1.38629
362 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
363 12 2.97980 2.52563 3.03204 0.19727 12 - -
364 1.38629 1.38629 1.38629 1.38629
365 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
366 13 2.86982 3.47591 0.13017 3.36931 13 - -
367 1.38629 1.38629 1.38629 1.38629
368 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
369 14 3.30705 0.14631 3.36166 2.73626 14 - -
370 1.38629 1.38629 1.38629 1.38629
371 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
372 15 3.30705 0.14631 3.36166 2.73626 15 - -
373 1.38629 1.38629 1.38629 1.38629
374 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
375 16 2.42796 0.63000 2.50086 1.21343 16 - -
376 1.38629 1.38629 1.38629 1.38629
377 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
378 17 2.97980 2.52563 3.03204 0.19727 17 - -
379 1.38629 1.38629 1.38629 1.38629
380 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
381 18 3.30705 0.14631 3.36166 2.73626 18 - -
382 1.38629 1.38629 1.38629 1.38629
383 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
384 19 2.86982 3.47591 0.13017 3.36931 19 - -
385 1.38629 1.38629 1.38629 1.38629
386 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
387 20 2.86982 3.47591 0.13017 3.36931 20 - -
388 1.38629 1.38629 1.38629 1.38629
389 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
390 21 2.86982 3.47591 0.13017 3.36931 21 - -
391 1.38629 1.38629 1.38629 1.38629
392 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
393 22 3.30705 0.14631 3.36166 2.73626 22 - -
394 1.38629 1.38629 1.38629 1.38629
395 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
396 23 0.15719 3.27118 2.73043 3.16274 23 - -
397 1.38629 1.38629 1.38629 1.38629
398 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
399 24 3.30705 0.14631 3.36166 2.73626 24 - -
400 1.38629 1.38629 1.38629 1.38629
401 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
402 25 2.97980 2.52563 3.03204 0.19727 25 - -
403 1.38629 1.38629 1.38629 1.38629
404 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
405 26 2.86982 3.47591 0.13017 3.36931 26 - -
406 1.38629 1.38629 1.38629 1.38629
407 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
408 27 2.86982 3.47591 0.13017 3.36931 27 - -
409 1.38629 1.38629 1.38629 1.38629
410 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
411 28 2.97980 2.52563 3.03204 0.19727 28 - -
412 1.38629 1.38629 1.38629 1.38629
413 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
414 29 3.30705 0.14631 3.36166 2.73626 29 - -
415 1.38629 1.38629 1.38629 1.38629
416 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
417 30 3.30705 0.14631 3.36166 2.73626 30 - -
418 1.38629 1.38629 1.38629 1.38629
419 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
420 31 3.30705 0.14631 3.36166 2.73626 31 - -
421 1.38629 1.38629 1.38629 1.38629
422 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
423 32 3.30705 0.14631 3.36166 2.73626 32 - -
424 1.38629 1.38629 1.38629 1.38629
425 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
426 33 2.97980 2.52563 3.03204 0.19727 33 - -
427 1.38629 1.38629 1.38629 1.38629
428 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
429 34 2.42796 0.63000 2.50086 1.21343 34 - -
430 1.38629 1.38629 1.38629 1.38629
431 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
432 35 2.86982 3.47591 0.13017 3.36931 35 - -
433 1.38629 1.38629 1.38629 1.38629
434 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
435 36 2.86982 3.47591 0.13017 3.36931 36 - -
436 1.38629 1.38629 1.38629 1.38629
437 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
438 37 2.97980 2.52563 3.03204 0.19727 37 - -
439 1.38629 1.38629 1.38629 1.38629
440 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
441 38 2.97980 2.52563 3.03204 0.19727 38 - -
442 1.38629 1.38629 1.38629 1.38629
443 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
444 39 2.97980 2.52563 3.03204 0.19727 39 - -
445 1.38629 1.38629 1.38629 1.38629
446 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
447 40 2.86982 3.47591 0.13017 3.36931 40 - -
448 1.38629 1.38629 1.38629 1.38629
449 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
450 41 3.30705 0.14631 3.36166 2.73626 41 - -
451 1.38629 1.38629 1.38629 1.38629
452 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
453 42 3.30705 0.14631 3.36166 2.73626 42 - -
454 1.38629 1.38629 1.38629 1.38629
455 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
456 43 2.97980 2.52563 3.03204 0.19727 43 - -
457 1.38629 1.38629 1.38629 1.38629
458 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
459 44 2.97980 2.52563 3.03204 0.19727 44 - -
460 1.38629 1.38629 1.38629 1.38629
461 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
462 45 2.86982 3.47591 0.13017 3.36931 45 - -
463 1.38629 1.38629 1.38629 1.38629
464 0.01980 3.93183 * 1.46634 0.26236 0.00000 *
465 //
466 HMMER3/b [3.0 | March 2010]
467 NAME 3_End_Amoebozoa_58S_end_two_long
468 LENG 45
469 ALPH DNA
470 RF no
471 CS no
472 MAP yes
473 DATE Fri Jan 20 23:03:29 2012
474 NSEQ 3
475 EFFN 3.000000
476 CKSUM 3221230878
477 STATS LOCAL MSV -8.1908 0.72028
478 STATS LOCAL VITERBI -7.8625 0.72028
479 STATS LOCAL FORWARD -4.0676 0.72028
480 HMM A C G T
481 m->m m->i m->d i->m i->i d->m d->d
482 COMPO 2.17869 1.14382 1.26619 1.25069
483 1.38629 1.38629 1.38629 1.38629
484 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 *
485 1 3.30705 0.14631 3.36166 2.73626 1 - -
486 1.38629 1.38629 1.38629 1.38629
487 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
488 2 2.86982 3.47591 0.13017 3.36931 2 - -
489 1.38629 1.38629 1.38629 1.38629
490 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
491 3 0.15719 3.27118 2.73043 3.16274 3 - -
492 1.38629 1.38629 1.38629 1.38629
493 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
494 4 2.97980 2.52563 3.03204 0.19727 4 - -
495 1.38629 1.38629 1.38629 1.38629
496 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
497 5 2.86982 3.47591 0.13017 3.36931 5 - -
498 1.38629 1.38629 1.38629 1.38629
499 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
500 6 3.30705 0.14631 3.36166 2.73626 6 - -
501 1.38629 1.38629 1.38629 1.38629
502 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
503 7 2.86982 3.47591 0.13017 3.36931 7 - -
504 1.38629 1.38629 1.38629 1.38629
505 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
506 8 2.86982 3.47591 0.13017 3.36931 8 - -
507 1.38629 1.38629 1.38629 1.38629
508 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
509 9 3.30705 0.14631 3.36166 2.73626 9 - -
510 1.38629 1.38629 1.38629 1.38629
511 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
512 10 3.30705 0.14631 3.36166 2.73626 10 - -
513 1.38629 1.38629 1.38629 1.38629
514 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
515 11 2.97980 2.52563 3.03204 0.19727 11 - -
516 1.38629 1.38629 1.38629 1.38629
517 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
518 12 2.97980 2.52563 3.03204 0.19727 12 - -
519 1.38629 1.38629 1.38629 1.38629
520 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
521 13 2.86982 3.47591 0.13017 3.36931 13 - -
522 1.38629 1.38629 1.38629 1.38629
523 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
524 14 3.30705 0.14631 3.36166 2.73626 14 - -
525 1.38629 1.38629 1.38629 1.38629
526 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
527 15 2.97980 2.52563 3.03204 0.19727 15 - -
528 1.38629 1.38629 1.38629 1.38629
529 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
530 16 2.97980 2.52563 3.03204 0.19727 16 - -
531 1.38629 1.38629 1.38629 1.38629
532 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
533 17 2.97980 2.52563 3.03204 0.19727 17 - -
534 1.38629 1.38629 1.38629 1.38629
535 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
536 18 3.30705 0.14631 3.36166 2.73626 18 - -
537 1.38629 1.38629 1.38629 1.38629
538 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
539 19 2.86982 3.47591 0.13017 3.36931 19 - -
540 1.38629 1.38629 1.38629 1.38629
541 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
542 20 0.15719 3.27118 2.73043 3.16274 20 - -
543 1.38629 1.38629 1.38629 1.38629
544 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
545 21 2.86982 3.47591 0.13017 3.36931 21 - -
546 1.38629 1.38629 1.38629 1.38629
547 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
548 22 3.30705 0.14631 3.36166 2.73626 22 - -
549 1.38629 1.38629 1.38629 1.38629
550 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
551 23 0.15719 3.27118 2.73043 3.16274 23 - -
552 1.38629 1.38629 1.38629 1.38629
553 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
554 24 3.30705 0.14631 3.36166 2.73626 24 - -
555 1.38629 1.38629 1.38629 1.38629
556 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
557 25 2.97980 2.52563 3.03204 0.19727 25 - -
558 1.38629 1.38629 1.38629 1.38629
559 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
560 26 2.86982 3.47591 0.13017 3.36931 26 - -
561 1.38629 1.38629 1.38629 1.38629
562 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
563 27 2.86982 3.47591 0.13017 3.36931 27 - -
564 1.38629 1.38629 1.38629 1.38629
565 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
566 28 3.30705 0.14631 3.36166 2.73626 28 - -
567 1.38629 1.38629 1.38629 1.38629
568 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
569 29 3.30705 0.14631 3.36166 2.73626 29 - -
570 1.38629 1.38629 1.38629 1.38629
571 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
572 30 3.30705 0.14631 3.36166 2.73626 30 - -
573 1.38629 1.38629 1.38629 1.38629
574 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
575 31 3.30705 0.14631 3.36166 2.73626 31 - -
576 1.38629 1.38629 1.38629 1.38629
577 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
578 32 3.30705 0.14631 3.36166 2.73626 32 - -
579 1.38629 1.38629 1.38629 1.38629
580 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
581 33 2.97980 2.52563 3.03204 0.19727 33 - -
582 1.38629 1.38629 1.38629 1.38629
583 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
584 34 2.97980 2.52563 3.03204 0.19727 34 - -
585 1.38629 1.38629 1.38629 1.38629
586 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
587 35 2.86982 3.47591 0.13017 3.36931 35 - -
588 1.38629 1.38629 1.38629 1.38629
589 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
590 36 2.86982 3.47591 0.13017 3.36931 36 - -
591 1.38629 1.38629 1.38629 1.38629
592 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
593 37 2.97980 2.52563 3.03204 0.19727 37 - -
594 1.38629 1.38629 1.38629 1.38629
595 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
596 38 2.97980 2.52563 3.03204 0.19727 38 - -
597 1.38629 1.38629 1.38629 1.38629
598 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
599 39 2.97980 2.52563 3.03204 0.19727 39 - -
600 1.38629 1.38629 1.38629 1.38629
601 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
602 40 2.86982 3.47591 0.13017 3.36931 40 - -
603 1.38629 1.38629 1.38629 1.38629
604 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
605 41 3.30705 0.14631 3.36166 2.73626 41 - -
606 1.38629 1.38629 1.38629 1.38629
607 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
608 42 3.30705 0.14631 3.36166 2.73626 42 - -
609 1.38629 1.38629 1.38629 1.38629
610 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
611 43 2.97980 2.52563 3.03204 0.19727 43 - -
612 1.38629 1.38629 1.38629 1.38629
613 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
614 44 2.97980 2.52563 3.03204 0.19727 44 - -
615 1.38629 1.38629 1.38629 1.38629
616 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
617 45 2.86982 3.47591 0.13017 3.36931 45 - -
618 1.38629 1.38629 1.38629 1.38629
619 0.01980 3.93183 * 1.46634 0.26236 0.00000 *
620 //
621 HMMER3/b [3.0 | March 2010]
622 NAME 2_5.8_Amoebozoa_58S_start_five_long
623 LENG 45
624 ALPH DNA
625 RF no
626 CS no
627 MAP yes
628 DATE Fri Jan 20 22:47:41 2012
629 NSEQ 5
630 EFFN 3.266602
631 CKSUM 3193284995
632 STATS LOCAL MSV -8.0914 0.71931
633 STATS LOCAL VITERBI -7.6850 0.71931
634 STATS LOCAL FORWARD -4.3591 0.71931
635 HMM A C G T
636 m->m m->i m->d i->m i->i d->m d->d
637 COMPO 1.55227 1.31654 1.38656 1.30845
638 1.38629 1.38629 1.38629 1.38629
639 0.03727 4.00124 4.00124 1.46634 0.26236 0.00000 *
640 1 3.41221 0.13273 3.46255 2.81376 1 - -
641 1.38629 1.38629 1.38629 1.38629
642 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
643 2 0.14431 3.36214 2.79014 3.26209 2 - -
644 1.38629 1.38629 1.38629 1.38629
645 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
646 3 0.14431 3.36214 2.79014 3.26209 3 - -
647 1.38629 1.38629 1.38629 1.38629
648 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
649 4 3.41221 0.13273 3.46255 2.81376 4 - -
650 1.38629 1.38629 1.38629 1.38629
651 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
652 5 3.07035 2.58352 3.11920 0.18165 5 - -
653 1.38629 1.38629 1.38629 1.38629
654 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
655 6 3.07035 2.58352 3.11920 0.18165 6 - -
656 1.38629 1.38629 1.38629 1.38629
657 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
658 7 3.07035 2.58352 3.11920 0.18165 7 - -
659 1.38629 1.38629 1.38629 1.38629
660 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
661 8 0.14431 3.36214 2.79014 3.26209 8 - -
662 1.38629 1.38629 1.38629 1.38629
663 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
664 9 3.41221 0.13273 3.46255 2.81376 9 - -
665 1.38629 1.38629 1.38629 1.38629
666 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
667 10 3.41221 0.13273 3.46255 2.81376 10 - -
668 1.38629 1.38629 1.38629 1.38629
669 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
670 11 0.14431 3.36214 2.79014 3.26209 11 - -
671 1.38629 1.38629 1.38629 1.38629
672 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
673 12 3.41221 0.13273 3.46255 2.81376 12 - -
674 1.38629 1.38629 1.38629 1.38629
675 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
676 13 3.41221 0.13273 3.46255 2.81376 13 - -
677 1.38629 1.38629 1.38629 1.38629
678 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
679 14 2.93484 3.56933 0.11920 3.47210 14 - -
680 1.38629 1.38629 1.38629 1.38629
681 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
682 15 3.07035 2.58352 3.11920 0.18165 15 - -
683 1.38629 1.38629 1.38629 1.38629
684 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
685 16 3.07035 2.58352 3.11920 0.18165 16 - -
686 1.38629 1.38629 1.38629 1.38629
687 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
688 17 0.14431 3.36214 2.79014 3.26209 17 - -
689 1.38629 1.38629 1.38629 1.38629
690 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
691 18 2.93484 3.56933 0.11920 3.47210 18 - -
692 1.38629 1.38629 1.38629 1.38629
693 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
694 19 2.93484 3.56933 0.11920 3.47210 19 - -
695 1.38629 1.38629 1.38629 1.38629
696 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
697 20 3.41221 0.13273 3.46255 2.81376 20 - -
698 1.38629 1.38629 1.38629 1.38629
699 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
700 21 2.93484 3.56933 0.11920 3.47210 21 - -
701 1.38629 1.38629 1.38629 1.38629
702 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
703 22 0.14431 3.36214 2.79014 3.26209 22 - -
704 1.38629 1.38629 1.38629 1.38629
705 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
706 23 3.07035 2.58352 3.11920 0.18165 23 - -
707 1.38629 1.38629 1.38629 1.38629
708 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
709 24 2.93484 3.56933 0.11920 3.47210 24 - -
710 1.38629 1.38629 1.38629 1.38629
711 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
712 25 2.93484 3.56933 0.11920 3.47210 25 - -
713 1.38629 1.38629 1.38629 1.38629
714 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
715 26 0.14431 3.36214 2.79014 3.26209 26 - -
716 1.38629 1.38629 1.38629 1.38629
717 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
718 27 3.07035 2.58352 3.11920 0.18165 27 - -
719 1.38629 1.38629 1.38629 1.38629
720 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
721 28 3.07035 2.58352 3.11920 0.18165 28 - -
722 1.38629 1.38629 1.38629 1.38629
723 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
724 29 2.93484 3.56933 0.11920 3.47210 29 - -
725 1.38629 1.38629 1.38629 1.38629
726 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
727 30 3.07035 2.58352 3.11920 0.18165 30 - -
728 1.38629 1.38629 1.38629 1.38629
729 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
730 31 3.07035 2.58352 3.11920 0.18165 31 - -
731 1.38629 1.38629 1.38629 1.38629
732 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
733 32 0.14431 3.36214 2.79014 3.26209 32 - -
734 1.38629 1.38629 1.38629 1.38629
735 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
736 33 2.93484 3.56933 0.11920 3.47210 33 - -
737 1.38629 1.38629 1.38629 1.38629
738 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
739 34 2.93484 3.56933 0.11920 3.47210 34 - -
740 1.38629 1.38629 1.38629 1.38629
741 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
742 35 3.07035 2.58352 3.11920 0.18165 35 - -
743 1.38629 1.38629 1.38629 1.38629
744 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
745 36 0.14431 3.36214 2.79014 3.26209 36 - -
746 1.38629 1.38629 1.38629 1.38629
747 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
748 37 3.41221 0.13273 3.46255 2.81376 37 - -
749 1.38629 1.38629 1.38629 1.38629
750 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
751 38 3.41221 0.13273 3.46255 2.81376 38 - -
752 1.38629 1.38629 1.38629 1.38629
753 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
754 39 3.41221 0.13273 3.46255 2.81376 39 - -
755 1.38629 1.38629 1.38629 1.38629
756 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
757 40 2.93484 3.56933 0.11920 3.47210 40 - -
758 1.38629 1.38629 1.38629 1.38629
759 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
760 41 3.41221 0.13273 3.46255 2.81376 41 - -
761 1.38629 1.38629 1.38629 1.38629
762 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
763 42 3.07035 2.58352 3.11920 0.18165 42 - -
764 1.38629 1.38629 1.38629 1.38629
765 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
766 43 3.07035 2.58352 3.11920 0.18165 43 - -
767 1.38629 1.38629 1.38629 1.38629
768 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
769 44 3.41221 0.13273 3.46255 2.81376 44 - -
770 1.38629 1.38629 1.38629 1.38629
771 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547
772 45 2.93484 3.56933 0.11920 3.47210 45 - -
773 1.38629 1.38629 1.38629 1.38629
774 0.01881 3.98278 * 1.46634 0.26236 0.00000 *
775 //
776 HMMER3/b [3.0 | March 2010]
777 NAME 2_5.8_Amoebozoa_58S_start_four_long
778 LENG 45
779 ALPH DNA
780 RF no
781 CS no
782 MAP yes
783 DATE Fri Jan 20 22:47:33 2012
784 NSEQ 3
785 EFFN 3.000000
786 CKSUM 3037931376
787 STATS LOCAL MSV -8.1113 0.72021
788 STATS LOCAL VITERBI -7.5925 0.72021
789 STATS LOCAL FORWARD -4.1062 0.72021
790 HMM A C G T
791 m->m m->i m->d i->m i->i d->m d->d
792 COMPO 1.55125 1.20479 1.38724 1.43339
793 1.38629 1.38629 1.38629 1.38629
794 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 *
795 1 3.30705 0.14631 3.36166 2.73626 1 - -
796 1.38629 1.38629 1.38629 1.38629
797 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
798 2 0.15719 3.27118 2.73043 3.16274 2 - -
799 1.38629 1.38629 1.38629 1.38629
800 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
801 3 3.30705 0.14631 3.36166 2.73626 3 - -
802 1.38629 1.38629 1.38629 1.38629
803 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
804 4 2.97980 2.52563 3.03204 0.19727 4 - -
805 1.38629 1.38629 1.38629 1.38629
806 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
807 5 3.30705 0.14631 3.36166 2.73626 5 - -
808 1.38629 1.38629 1.38629 1.38629
809 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
810 6 0.15719 3.27118 2.73043 3.16274 6 - -
811 1.38629 1.38629 1.38629 1.38629
812 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
813 7 2.97980 2.52563 3.03204 0.19727 7 - -
814 1.38629 1.38629 1.38629 1.38629
815 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
816 8 0.15719 3.27118 2.73043 3.16274 8 - -
817 1.38629 1.38629 1.38629 1.38629
818 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
819 9 3.30705 0.14631 3.36166 2.73626 9 - -
820 1.38629 1.38629 1.38629 1.38629
821 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
822 10 3.30705 0.14631 3.36166 2.73626 10 - -
823 1.38629 1.38629 1.38629 1.38629
824 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
825 11 0.15719 3.27118 2.73043 3.16274 11 - -
826 1.38629 1.38629 1.38629 1.38629
827 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
828 12 3.30705 0.14631 3.36166 2.73626 12 - -
829 1.38629 1.38629 1.38629 1.38629
830 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
831 13 3.30705 0.14631 3.36166 2.73626 13 - -
832 1.38629 1.38629 1.38629 1.38629
833 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
834 14 2.86982 3.47591 0.13017 3.36931 14 - -
835 1.38629 1.38629 1.38629 1.38629
836 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
837 15 2.97980 2.52563 3.03204 0.19727 15 - -
838 1.38629 1.38629 1.38629 1.38629
839 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
840 16 2.97980 2.52563 3.03204 0.19727 16 - -
841 1.38629 1.38629 1.38629 1.38629
842 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
843 17 0.15719 3.27118 2.73043 3.16274 17 - -
844 1.38629 1.38629 1.38629 1.38629
845 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
846 18 2.86982 3.47591 0.13017 3.36931 18 - -
847 1.38629 1.38629 1.38629 1.38629
848 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
849 19 2.86982 3.47591 0.13017 3.36931 19 - -
850 1.38629 1.38629 1.38629 1.38629
851 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
852 20 3.30705 0.14631 3.36166 2.73626 20 - -
853 1.38629 1.38629 1.38629 1.38629
854 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
855 21 2.86982 3.47591 0.13017 3.36931 21 - -
856 1.38629 1.38629 1.38629 1.38629
857 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
858 22 0.15719 3.27118 2.73043 3.16274 22 - -
859 1.38629 1.38629 1.38629 1.38629
860 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
861 23 2.97980 2.52563 3.03204 0.19727 23 - -
862 1.38629 1.38629 1.38629 1.38629
863 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
864 24 2.86982 3.47591 0.13017 3.36931 24 - -
865 1.38629 1.38629 1.38629 1.38629
866 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
867 25 2.86982 3.47591 0.13017 3.36931 25 - -
868 1.38629 1.38629 1.38629 1.38629
869 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
870 26 0.15719 3.27118 2.73043 3.16274 26 - -
871 1.38629 1.38629 1.38629 1.38629
872 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
873 27 2.97980 2.52563 3.03204 0.19727 27 - -
874 1.38629 1.38629 1.38629 1.38629
875 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
876 28 2.97980 2.52563 3.03204 0.19727 28 - -
877 1.38629 1.38629 1.38629 1.38629
878 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
879 29 2.86982 3.47591 0.13017 3.36931 29 - -
880 1.38629 1.38629 1.38629 1.38629
881 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
882 30 3.30705 0.14631 3.36166 2.73626 30 - -
883 1.38629 1.38629 1.38629 1.38629
884 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
885 31 2.97980 2.52563 3.03204 0.19727 31 - -
886 1.38629 1.38629 1.38629 1.38629
887 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
888 32 0.15719 3.27118 2.73043 3.16274 32 - -
889 1.38629 1.38629 1.38629 1.38629
890 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
891 33 2.86982 3.47591 0.13017 3.36931 33 - -
892 1.38629 1.38629 1.38629 1.38629
893 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
894 34 2.86982 3.47591 0.13017 3.36931 34 - -
895 1.38629 1.38629 1.38629 1.38629
896 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
897 35 2.97980 2.52563 3.03204 0.19727 35 - -
898 1.38629 1.38629 1.38629 1.38629
899 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
900 36 0.15719 3.27118 2.73043 3.16274 36 - -
901 1.38629 1.38629 1.38629 1.38629
902 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
903 37 3.30705 0.14631 3.36166 2.73626 37 - -
904 1.38629 1.38629 1.38629 1.38629
905 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
906 38 3.30705 0.14631 3.36166 2.73626 38 - -
907 1.38629 1.38629 1.38629 1.38629
908 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
909 39 3.30705 0.14631 3.36166 2.73626 39 - -
910 1.38629 1.38629 1.38629 1.38629
911 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
912 40 2.86982 3.47591 0.13017 3.36931 40 - -
913 1.38629 1.38629 1.38629 1.38629
914 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
915 41 3.30705 0.14631 3.36166 2.73626 41 - -
916 1.38629 1.38629 1.38629 1.38629
917 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
918 42 2.97980 2.52563 3.03204 0.19727 42 - -
919 1.38629 1.38629 1.38629 1.38629
920 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
921 43 2.97980 2.52563 3.03204 0.19727 43 - -
922 1.38629 1.38629 1.38629 1.38629
923 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
924 44 3.30705 0.14631 3.36166 2.73626 44 - -
925 1.38629 1.38629 1.38629 1.38629
926 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
927 45 2.86982 3.47591 0.13017 3.36931 45 - -
928 1.38629 1.38629 1.38629 1.38629
929 0.01980 3.93183 * 1.46634 0.26236 0.00000 *
930 //
931 HMMER3/b [3.0 | March 2010]
932 NAME 2_5.8_Amoebozoa_58S_start_one_long
933 LENG 45
934 ALPH DNA
935 RF no
936 CS no
937 MAP yes
938 DATE Fri Jan 20 22:47:04 2012
939 NSEQ 2
940 EFFN 2.000000
941 CKSUM 3357680575
942 STATS LOCAL MSV -7.5301 0.72805
943 STATS LOCAL VITERBI -8.1447 0.72805
944 STATS LOCAL FORWARD -3.6436 0.72805
945 HMM A C G T
946 m->m m->i m->d i->m i->i d->m d->d
947 COMPO 1.52137 1.28488 1.38085 1.37225
948 1.38629 1.38629 1.38629 1.38629
949 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
950 1 0.23862 2.84929 2.43386 2.70756 1 - -
951 1.38629 1.38629 1.38629 1.38629
952 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
953 2 2.81865 0.23582 2.88868 2.35662 2 - -
954 1.38629 1.38629 1.38629 1.38629
955 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
956 3 0.23862 2.84929 2.43386 2.70756 3 - -
957 1.38629 1.38629 1.38629 1.38629
958 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
959 4 2.57915 2.25909 2.64442 0.28946 4 - -
960 1.38629 1.38629 1.38629 1.38629
961 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
962 5 2.57915 2.25909 2.64442 0.28946 5 - -
963 1.38629 1.38629 1.38629 1.38629
964 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
965 6 2.81865 0.23582 2.88868 2.35662 6 - -
966 1.38629 1.38629 1.38629 1.38629
967 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
968 7 2.57915 2.25909 2.64442 0.28946 7 - -
969 1.38629 1.38629 1.38629 1.38629
970 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
971 8 0.23862 2.84929 2.43386 2.70756 8 - -
972 1.38629 1.38629 1.38629 1.38629
973 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
974 9 2.81865 0.23582 2.88868 2.35662 9 - -
975 1.38629 1.38629 1.38629 1.38629
976 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
977 10 2.81865 0.23582 2.88868 2.35662 10 - -
978 1.38629 1.38629 1.38629 1.38629
979 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
980 11 0.23862 2.84929 2.43386 2.70756 11 - -
981 1.38629 1.38629 1.38629 1.38629
982 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
983 12 2.81865 0.23582 2.88868 2.35662 12 - -
984 1.38629 1.38629 1.38629 1.38629
985 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
986 13 2.81865 0.23582 2.88868 2.35662 13 - -
987 1.38629 1.38629 1.38629 1.38629
988 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
989 14 2.53331 3.02441 0.20344 2.88069 14 - -
990 1.38629 1.38629 1.38629 1.38629
991 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
992 15 2.57915 2.25909 2.64442 0.28946 15 - -
993 1.38629 1.38629 1.38629 1.38629
994 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
995 16 2.57915 2.25909 2.64442 0.28946 16 - -
996 1.38629 1.38629 1.38629 1.38629
997 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
998 17 0.23862 2.84929 2.43386 2.70756 17 - -
999 1.38629 1.38629 1.38629 1.38629
1000 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1001 18 2.53331 3.02441 0.20344 2.88069 18 - -
1002 1.38629 1.38629 1.38629 1.38629
1003 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1004 19 2.53331 3.02441 0.20344 2.88069 19 - -
1005 1.38629 1.38629 1.38629 1.38629
1006 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1007 20 2.81865 0.23582 2.88868 2.35662 20 - -
1008 1.38629 1.38629 1.38629 1.38629
1009 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1010 21 2.53331 3.02441 0.20344 2.88069 21 - -
1011 1.38629 1.38629 1.38629 1.38629
1012 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1013 22 0.23862 2.84929 2.43386 2.70756 22 - -
1014 1.38629 1.38629 1.38629 1.38629
1015 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1016 23 2.57915 2.25909 2.64442 0.28946 23 - -
1017 1.38629 1.38629 1.38629 1.38629
1018 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1019 24 2.53331 3.02441 0.20344 2.88069 24 - -
1020 1.38629 1.38629 1.38629 1.38629
1021 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1022 25 2.53331 3.02441 0.20344 2.88069 25 - -
1023 1.38629 1.38629 1.38629 1.38629
1024 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1025 26 0.23862 2.84929 2.43386 2.70756 26 - -
1026 1.38629 1.38629 1.38629 1.38629
1027 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1028 27 2.57915 2.25909 2.64442 0.28946 27 - -
1029 1.38629 1.38629 1.38629 1.38629
1030 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1031 28 2.57915 2.25909 2.64442 0.28946 28 - -
1032 1.38629 1.38629 1.38629 1.38629
1033 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1034 29 2.53331 3.02441 0.20344 2.88069 29 - -
1035 1.38629 1.38629 1.38629 1.38629
1036 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1037 30 2.81865 0.23582 2.88868 2.35662 30 - -
1038 1.38629 1.38629 1.38629 1.38629
1039 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1040 31 2.57915 2.25909 2.64442 0.28946 31 - -
1041 1.38629 1.38629 1.38629 1.38629
1042 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1043 32 0.23862 2.84929 2.43386 2.70756 32 - -
1044 1.38629 1.38629 1.38629 1.38629
1045 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1046 33 2.53331 3.02441 0.20344 2.88069 33 - -
1047 1.38629 1.38629 1.38629 1.38629
1048 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1049 34 2.53331 3.02441 0.20344 2.88069 34 - -
1050 1.38629 1.38629 1.38629 1.38629
1051 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1052 35 2.57915 2.25909 2.64442 0.28946 35 - -
1053 1.38629 1.38629 1.38629 1.38629
1054 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1055 36 0.23862 2.84929 2.43386 2.70756 36 - -
1056 1.38629 1.38629 1.38629 1.38629
1057 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1058 37 2.81865 0.23582 2.88868 2.35662 37 - -
1059 1.38629 1.38629 1.38629 1.38629
1060 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1061 38 2.81865 0.23582 2.88868 2.35662 38 - -
1062 1.38629 1.38629 1.38629 1.38629
1063 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1064 39 2.81865 0.23582 2.88868 2.35662 39 - -
1065 1.38629 1.38629 1.38629 1.38629
1066 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1067 40 2.53331 3.02441 0.20344 2.88069 40 - -
1068 1.38629 1.38629 1.38629 1.38629
1069 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1070 41 2.81865 0.23582 2.88868 2.35662 41 - -
1071 1.38629 1.38629 1.38629 1.38629
1072 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1073 42 2.57915 2.25909 2.64442 0.28946 42 - -
1074 1.38629 1.38629 1.38629 1.38629
1075 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1076 43 2.57915 2.25909 2.64442 0.28946 43 - -
1077 1.38629 1.38629 1.38629 1.38629
1078 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1079 44 2.81865 0.23582 2.88868 2.35662 44 - -
1080 1.38629 1.38629 1.38629 1.38629
1081 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1082 45 2.53331 3.02441 0.20344 2.88069 45 - -
1083 1.38629 1.38629 1.38629 1.38629
1084 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
1085 //
1086 HMMER3/b [3.0 | March 2010]
1087 NAME 2_5.8_Amoebozoa_58S_start_three_long
1088 LENG 45
1089 ALPH DNA
1090 RF no
1091 CS no
1092 MAP yes
1093 DATE Fri Jan 20 22:47:24 2012
1094 NSEQ 2
1095 EFFN 2.000000
1096 CKSUM 993253840
1097 STATS LOCAL MSV -7.5156 0.72805
1098 STATS LOCAL VITERBI -8.1384 0.72805
1099 STATS LOCAL FORWARD -3.5209 0.72805
1100 HMM A C G T
1101 m->m m->i m->d i->m i->i d->m d->d
1102 COMPO 1.52247 1.28387 1.38089 1.37236
1103 1.38629 1.38629 1.38629 1.38629
1104 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
1105 1 2.81865 0.23582 2.88868 2.35662 1 - -
1106 1.38629 1.38629 1.38629 1.38629
1107 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1108 2 0.23862 2.84929 2.43386 2.70756 2 - -
1109 1.38629 1.38629 1.38629 1.38629
1110 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1111 3 0.23862 2.84929 2.43386 2.70756 3 - -
1112 1.38629 1.38629 1.38629 1.38629
1113 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1114 4 2.57915 2.25909 2.64442 0.28946 4 - -
1115 1.38629 1.38629 1.38629 1.38629
1116 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1117 5 2.81865 0.23582 2.88868 2.35662 5 - -
1118 1.38629 1.38629 1.38629 1.38629
1119 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1120 6 2.57915 2.25909 2.64442 0.28946 6 - -
1121 1.38629 1.38629 1.38629 1.38629
1122 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1123 7 2.57915 2.25909 2.64442 0.28946 7 - -
1124 1.38629 1.38629 1.38629 1.38629
1125 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1126 8 0.23862 2.84929 2.43386 2.70756 8 - -
1127 1.38629 1.38629 1.38629 1.38629
1128 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1129 9 2.81865 0.23582 2.88868 2.35662 9 - -
1130 1.38629 1.38629 1.38629 1.38629
1131 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1132 10 2.81865 0.23582 2.88868 2.35662 10 - -
1133 1.38629 1.38629 1.38629 1.38629
1134 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1135 11 0.23862 2.84929 2.43386 2.70756 11 - -
1136 1.38629 1.38629 1.38629 1.38629
1137 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1138 12 2.81865 0.23582 2.88868 2.35662 12 - -
1139 1.38629 1.38629 1.38629 1.38629
1140 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1141 13 2.81865 0.23582 2.88868 2.35662 13 - -
1142 1.38629 1.38629 1.38629 1.38629
1143 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1144 14 2.53331 3.02441 0.20344 2.88069 14 - -
1145 1.38629 1.38629 1.38629 1.38629
1146 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1147 15 2.57915 2.25909 2.64442 0.28946 15 - -
1148 1.38629 1.38629 1.38629 1.38629
1149 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1150 16 2.57915 2.25909 2.64442 0.28946 16 - -
1151 1.38629 1.38629 1.38629 1.38629
1152 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1153 17 0.23862 2.84929 2.43386 2.70756 17 - -
1154 1.38629 1.38629 1.38629 1.38629
1155 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1156 18 2.53331 3.02441 0.20344 2.88069 18 - -
1157 1.38629 1.38629 1.38629 1.38629
1158 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1159 19 2.53331 3.02441 0.20344 2.88069 19 - -
1160 1.38629 1.38629 1.38629 1.38629
1161 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1162 20 2.81865 0.23582 2.88868 2.35662 20 - -
1163 1.38629 1.38629 1.38629 1.38629
1164 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1165 21 2.53331 3.02441 0.20344 2.88069 21 - -
1166 1.38629 1.38629 1.38629 1.38629
1167 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1168 22 0.23862 2.84929 2.43386 2.70756 22 - -
1169 1.38629 1.38629 1.38629 1.38629
1170 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1171 23 2.57915 2.25909 2.64442 0.28946 23 - -
1172 1.38629 1.38629 1.38629 1.38629
1173 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1174 24 2.53331 3.02441 0.20344 2.88069 24 - -
1175 1.38629 1.38629 1.38629 1.38629
1176 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1177 25 2.53331 3.02441 0.20344 2.88069 25 - -
1178 1.38629 1.38629 1.38629 1.38629
1179 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1180 26 0.23862 2.84929 2.43386 2.70756 26 - -
1181 1.38629 1.38629 1.38629 1.38629
1182 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1183 27 2.57915 2.25909 2.64442 0.28946 27 - -
1184 1.38629 1.38629 1.38629 1.38629
1185 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1186 28 2.57915 2.25909 2.64442 0.28946 28 - -
1187 1.38629 1.38629 1.38629 1.38629
1188 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1189 29 2.53331 3.02441 0.20344 2.88069 29 - -
1190 1.38629 1.38629 1.38629 1.38629
1191 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1192 30 2.81865 0.23582 2.88868 2.35662 30 - -
1193 1.38629 1.38629 1.38629 1.38629
1194 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1195 31 2.57915 2.25909 2.64442 0.28946 31 - -
1196 1.38629 1.38629 1.38629 1.38629
1197 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1198 32 0.23862 2.84929 2.43386 2.70756 32 - -
1199 1.38629 1.38629 1.38629 1.38629
1200 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1201 33 2.53331 3.02441 0.20344 2.88069 33 - -
1202 1.38629 1.38629 1.38629 1.38629
1203 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1204 34 2.53331 3.02441 0.20344 2.88069 34 - -
1205 1.38629 1.38629 1.38629 1.38629
1206 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1207 35 2.57915 2.25909 2.64442 0.28946 35 - -
1208 1.38629 1.38629 1.38629 1.38629
1209 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1210 36 0.23862 2.84929 2.43386 2.70756 36 - -
1211 1.38629 1.38629 1.38629 1.38629
1212 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1213 37 2.81865 0.23582 2.88868 2.35662 37 - -
1214 1.38629 1.38629 1.38629 1.38629
1215 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1216 38 2.81865 0.23582 2.88868 2.35662 38 - -
1217 1.38629 1.38629 1.38629 1.38629
1218 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1219 39 2.81865 0.23582 2.88868 2.35662 39 - -
1220 1.38629 1.38629 1.38629 1.38629
1221 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1222 40 2.53331 3.02441 0.20344 2.88069 40 - -
1223 1.38629 1.38629 1.38629 1.38629
1224 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1225 41 2.81865 0.23582 2.88868 2.35662 41 - -
1226 1.38629 1.38629 1.38629 1.38629
1227 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1228 42 2.57915 2.25909 2.64442 0.28946 42 - -
1229 1.38629 1.38629 1.38629 1.38629
1230 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1231 43 2.57915 2.25909 2.64442 0.28946 43 - -
1232 1.38629 1.38629 1.38629 1.38629
1233 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1234 44 2.81865 0.23582 2.88868 2.35662 44 - -
1235 1.38629 1.38629 1.38629 1.38629
1236 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
1237 45 2.53331 3.02441 0.20344 2.88069 45 - -
1238 1.38629 1.38629 1.38629 1.38629
1239 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
1240 //
1241 HMMER3/b [3.0 | March 2010]
1242 NAME 2_5.8_Amoebozoa_58S_start_two_long
1243 LENG 45
1244 ALPH DNA
1245 RF no
1246 CS no
1247 MAP yes
1248 DATE Fri Jan 20 22:47:15 2012
1249 NSEQ 4
1250 EFFN 3.175781
1251 CKSUM 253078905
1252 STATS LOCAL MSV -8.1442 0.71933
1253 STATS LOCAL VITERBI -7.5796 0.71933
1254 STATS LOCAL FORWARD -4.2294 0.71933
1255 HMM A C G T
1256 m->m m->i m->d i->m i->i d->m d->d
1257 COMPO 1.47959 1.15119 1.38788 1.57791
1258 1.38629 1.38629 1.38629 1.38629
1259 0.03791 3.98449 3.98449 1.46634 0.26236 0.00000 *
1260 1 3.37748 0.13704 3.42926 2.78832 1 - -
1261 1.38629 1.38629 1.38629 1.38629
1262 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
1263 2 0.14843 3.33206 2.77050 3.22920 2 - -
1264 1.38629 1.38629 1.38629 1.38629
1265 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
1266 3 3.37748 0.13704 3.42926 2.78832 3 - -
1267 1.38629 1.38629 1.38629 1.38629
1268 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
1269 4 3.37748 0.13704 3.42926 2.78832 4 - -
1270 1.38629 1.38629 1.38629 1.38629
1271 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
1272 5 3.37748 0.13704 3.42926 2.78832 5 - -
1273 1.38629 1.38629 1.38629 1.38629
1274 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
1275 6 0.14843 3.33206 2.77050 3.22920 6 - -
1276 1.38629 1.38629 1.38629 1.38629
1277 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
1278 7 3.04021 2.56430 3.09020 0.18668 7 - -
1279 1.38629 1.38629 1.38629 1.38629
1280 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
1281 8 0.14843 3.33206 2.77050 3.22920 8 - -
1282 1.38629 1.38629 1.38629 1.38629
1283 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
1284 9 3.37748 0.13704 3.42926 2.78832 9 - -
1285 1.38629 1.38629 1.38629 1.38629
1286 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
1287 10 3.37748 0.13704 3.42926 2.78832 10 - -
1288 1.38629 1.38629 1.38629 1.38629
1289 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
1290 11 0.14843 3.33206 2.77050 3.22920 11 - -
1291 1.38629 1.38629 1.38629 1.38629
1292 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
1293 12 3.37748 0.13704 3.42926 2.78832 12 - -
1294 1.38629 1.38629 1.38629 1.38629
1295 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
1296 13 3.37748 0.13704 3.42926 2.78832 13 - -
1297 1.38629 1.38629 1.38629 1.38629
1298 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
1299 14 2.91360 3.53861 0.12268 3.43825 14 - -
1300 1.38629 1.38629 1.38629 1.38629
1301 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
1302 15 3.04021 2.56430 3.09020 0.18668 15 - -
1303 1.38629 1.38629 1.38629 1.38629
1304 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
1305 16 0.14843 3.33206 2.77050 3.22920 16 - -
1306 1.38629 1.38629 1.38629 1.38629
1307 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
1308 17 0.14843 3.33206 2.77050 3.22920 17 - -
1309 1.38629 1.38629 1.38629 1.38629
1310 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
1311 18 2.91360 3.53861 0.12268 3.43825 18 - -
1312 1.38629 1.38629 1.38629 1.38629
1313 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
1314 19 2.91360 3.53861 0.12268 3.43825 19 - -
1315 1.38629 1.38629 1.38629 1.38629
1316 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
1317 20 3.37748 0.13704 3.42926 2.78832 20 - -
1318 1.38629 1.38629 1.38629 1.38629
1319 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
1320 21 2.91360 3.53861 0.12268 3.43825 21 - -
1321 1.38629 1.38629 1.38629 1.38629
1322 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
1323 22 0.14843 3.33206 2.77050 3.22920 22 - -
1324 1.38629 1.38629 1.38629 1.38629
1325 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
1326 23 3.04021 2.56430 3.09020 0.18668 23 - -
1327 1.38629 1.38629 1.38629 1.38629
1328 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
1329 24 2.91360 3.53861 0.12268 3.43825 24 - -
1330 1.38629 1.38629 1.38629 1.38629
1331 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
1332 25 2.91360 3.53861 0.12268 3.43825 25 - -
1333 1.38629 1.38629 1.38629 1.38629
1334 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
1335 26 0.14843 3.33206 2.77050 3.22920 26 - -
1336 1.38629 1.38629 1.38629 1.38629
1337 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
1338 27 3.04021 2.56430 3.09020 0.18668 27 - -
1339 1.38629 1.38629 1.38629 1.38629
1340 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
1341 28 3.04021 2.56430 3.09020 0.18668 28 - -
1342 1.38629 1.38629 1.38629 1.38629
1343 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
1344 29 2.91360 3.53861 0.12268 3.43825 29 - -
1345 1.38629 1.38629 1.38629 1.38629
1346 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
1347 30 3.37748 0.13704 3.42926 2.78832 30 - -
1348 1.38629 1.38629 1.38629 1.38629
1349 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
1350 31 3.04021 2.56430 3.09020 0.18668 31 - -
1351 1.38629 1.38629 1.38629 1.38629
1352 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
1353 32 0.14843 3.33206 2.77050 3.22920 32 - -
1354 1.38629 1.38629 1.38629 1.38629
1355 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
1356 33 2.91360 3.53861 0.12268 3.43825 33 - -
1357 1.38629 1.38629 1.38629 1.38629
1358 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
1359 34 2.91360 3.53861 0.12268 3.43825 34 - -
1360 1.38629 1.38629 1.38629 1.38629
1361 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
1362 35 3.04021 2.56430 3.09020 0.18668 35 - -
1363 1.38629 1.38629 1.38629 1.38629
1364 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
1365 36 0.14843 3.33206 2.77050 3.22920 36 - -
1366 1.38629 1.38629 1.38629 1.38629
1367 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
1368 37 3.37748 0.13704 3.42926 2.78832 37 - -
1369 1.38629 1.38629 1.38629 1.38629
1370 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
1371 38 3.37748 0.13704 3.42926 2.78832 38 - -
1372 1.38629 1.38629 1.38629 1.38629
1373 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
1374 39 3.37748 0.13704 3.42926 2.78832 39 - -
1375 1.38629 1.38629 1.38629 1.38629
1376 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
1377 40 2.91360 3.53861 0.12268 3.43825 40 - -
1378 1.38629 1.38629 1.38629 1.38629
1379 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
1380 41 3.37748 0.13704 3.42926 2.78832 41 - -
1381 1.38629 1.38629 1.38629 1.38629
1382 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
1383 42 3.04021 2.56430 3.09020 0.18668 42 - -
1384 1.38629 1.38629 1.38629 1.38629
1385 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
1386 43 3.04021 2.56430 3.09020 0.18668 43 - -
1387 1.38629 1.38629 1.38629 1.38629
1388 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
1389 44 3.37748 0.13704 3.42926 2.78832 44 - -
1390 1.38629 1.38629 1.38629 1.38629
1391 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
1392 45 2.91360 3.53861 0.12268 3.43825 45 - -
1393 1.38629 1.38629 1.38629 1.38629
1394 0.01914 3.96571 * 1.46634 0.26236 0.00000 *
1395 //
1396 HMMER3/b [3.0 | March 2010]
1397 NAME 4_LSU_Amoebozoa_4_LSU_start_onea_long
1398 LENG 45
1399 ALPH DNA
1400 RF no
1401 CS no
1402 MAP yes
1403 DATE Fri Jan 20 23:25:49 2012
1404 NSEQ 51
1405 EFFN 3.408508
1406 CKSUM 3712596225
1407 STATS LOCAL MSV -7.7739 0.71932
1408 STATS LOCAL VITERBI -7.6712 0.71932
1409 STATS LOCAL FORWARD -4.0000 0.71932
1410 HMM A C G T
1411 m->m m->i m->d i->m i->i d->m d->d
1412 COMPO 0.96530 1.36587 1.68894 1.71893
1413 1.38629 1.38629 1.38629 1.38629
1414 0.03631 4.02687 4.02687 1.46634 0.26236 0.00000 *
1415 1 2.68706 3.32674 0.16517 3.03111 1 - -
1416 1.38629 1.38629 1.38629 1.38629
1417 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547
1418 2 3.46430 0.12655 3.51242 2.85165 2 - -
1419 1.38629 1.38629 1.38629 1.38629
1420 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547
1421 3 0.16058 3.32313 2.62437 3.22332 3 - -
1422 1.38629 1.38629 1.38629 1.38629
1423 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547
1424 4 0.13837 3.40735 2.81949 3.31159 4 - -
1425 1.38629 1.38629 1.38629 1.38629
1426 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547
1427 5 2.96633 3.61517 0.11420 3.52270 5 - -
1428 1.38629 1.38629 1.38629 1.38629
1429 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547
1430 6 0.13837 3.40735 2.81949 3.31159 6 - -
1431 1.38629 1.38629 1.38629 1.38629
1432 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547
1433 7 3.46430 0.12655 3.51242 2.85165 7 - -
1434 1.38629 1.38629 1.38629 1.38629
1435 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547
1436 8 3.46430 0.12655 3.51242 2.85165 8 - -
1437 1.38629 1.38629 1.38629 1.38629
1438 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547
1439 9 3.11604 2.61257 3.16314 0.17432 9 - -
1440 1.38629 1.38629 1.38629 1.38629
1441 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547
1442 10 3.46430 0.12655 3.51242 2.85165 10 - -
1443 1.38629 1.38629 1.38629 1.38629
1444 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547
1445 11 0.13837 3.40735 2.81949 3.31159 11 - -
1446 1.38629 1.38629 1.38629 1.38629
1447 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547
1448 12 0.13837 3.40735 2.81949 3.31159 12 - -
1449 1.38629 1.38629 1.38629 1.38629
1450 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547
1451 13 0.13837 3.40735 2.81949 3.31159 13 - -
1452 1.38629 1.38629 1.38629 1.38629
1453 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547
1454 14 3.11604 2.61257 3.16314 0.17432 14 - -
1455 1.38629 1.38629 1.38629 1.38629
1456 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547
1457 15 3.46430 0.12655 3.51242 2.85165 15 - -
1458 1.38629 1.38629 1.38629 1.38629
1459 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547
1460 16 0.13837 3.40735 2.81949 3.31159 16 - -
1461 1.38629 1.38629 1.38629 1.38629
1462 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547
1463 17 0.13837 3.40735 2.81949 3.31159 17 - -
1464 1.38629 1.38629 1.38629 1.38629
1465 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547
1466 18 0.17671 3.20419 2.73061 2.87869 18 - -
1467 1.38629 1.38629 1.38629 1.38629
1468 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547
1469 19 3.34985 0.15124 3.40150 2.63187 19 - -
1470 1.38629 1.38629 1.38629 1.38629
1471 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547
1472 20 0.13837 3.40735 2.81949 3.31159 20 - -
1473 1.38629 1.38629 1.38629 1.38629
1474 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547
1475 21 0.13837 3.40735 2.81949 3.31159 21 - -
1476 1.38629 1.38629 1.38629 1.38629
1477 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547
1478 22 2.96633 3.61517 0.11420 3.52270 22 - -
1479 1.38629 1.38629 1.38629 1.38629
1480 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547
1481 23 2.96633 3.61517 0.11420 3.52270 23 - -
1482 1.38629 1.38629 1.38629 1.38629
1483 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547
1484 24 0.13837 3.40735 2.81949 3.31159 24 - -
1485 1.38629 1.38629 1.38629 1.38629
1486 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547
1487 25 3.11604 2.61257 3.16314 0.17432 25 - -
1488 1.38629 1.38629 1.38629 1.38629
1489 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547
1490 26 0.13837 3.40735 2.81949 3.31159 26 - -
1491 1.38629 1.38629 1.38629 1.38629
1492 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547
1493 27 3.46430 0.12655 3.51242 2.85165 27 - -
1494 1.38629 1.38629 1.38629 1.38629
1495 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547
1496 28 3.46430 0.12655 3.51242 2.85165 28 - -
1497 1.38629 1.38629 1.38629 1.38629
1498 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547
1499 29 3.46430 0.12655 3.51242 2.85165 29 - -
1500 1.38629 1.38629 1.38629 1.38629
1501 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547
1502 30 2.96633 3.61517 0.11420 3.52270 30 - -
1503 1.38629 1.38629 1.38629 1.38629
1504 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547
1505 31 3.46430 0.12655 3.51242 2.85165 31 - -
1506 1.38629 1.38629 1.38629 1.38629
1507 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547
1508 32 3.11604 2.61257 3.16314 0.17432 32 - -
1509 1.38629 1.38629 1.38629 1.38629
1510 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547
1511 33 2.96633 3.61517 0.11420 3.52270 33 - -
1512 1.38629 1.38629 1.38629 1.38629
1513 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547
1514 34 0.13837 3.40735 2.81949 3.31159 34 - -
1515 1.38629 1.38629 1.38629 1.38629
1516 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547
1517 35 0.13837 3.40735 2.81949 3.31159 35 - -
1518 1.38629 1.38629 1.38629 1.38629
1519 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547
1520 36 2.44645 0.73953 2.51879 1.03422 36 - -
1521 1.38629 1.38629 1.38629 1.38629
1522 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547
1523 37 3.11604 2.61257 3.16314 0.17432 37 - -
1524 1.38629 1.38629 1.38629 1.38629
1525 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547
1526 38 3.11604 2.61257 3.16314 0.17432 38 - -
1527 1.38629 1.38629 1.38629 1.38629
1528 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547
1529 39 0.13837 3.40735 2.81949 3.31159 39 - -
1530 1.38629 1.38629 1.38629 1.38629
1531 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547
1532 40 0.13837 3.40735 2.81949 3.31159 40 - -
1533 1.38629 1.38629 1.38629 1.38629
1534 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547
1535 41 2.96633 3.61517 0.11420 3.52270 41 - -
1536 1.38629 1.38629 1.38629 1.38629
1537 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547
1538 42 3.46430 0.12655 3.51242 2.85165 42 - -
1539 1.38629 1.38629 1.38629 1.38629
1540 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547
1541 43 0.13837 3.40735 2.81949 3.31159 43 - -
1542 1.38629 1.38629 1.38629 1.38629
1543 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547
1544 44 3.11604 2.61257 3.16314 0.17432 44 - -
1545 1.38629 1.38629 1.38629 1.38629
1546 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547
1547 45 0.13837 3.40735 2.81949 3.31159 45 - -
1548 1.38629 1.38629 1.38629 1.38629
1549 0.01832 4.00888 * 1.46634 0.26236 0.00000 *
1550 //
1551 HMMER3/b [3.0 | March 2010]
1552 NAME 4_LSU_Amoebozoa_4_LSU_start_oneb_long
1553 LENG 45
1554 ALPH DNA
1555 RF no
1556 CS no
1557 MAP yes
1558 DATE Fri Jan 20 23:25:57 2012
1559 NSEQ 6
1560 EFFN 3.559570
1561 CKSUM 4179308964
1562 STATS LOCAL MSV -7.6411 0.71932
1563 STATS LOCAL VITERBI -7.6553 0.71932
1564 STATS LOCAL FORWARD -3.8849 0.71932
1565 HMM A C G T
1566 m->m m->i m->d i->m i->i d->m d->d
1567 COMPO 1.09739 1.36145 1.63014 1.54147
1568 1.38629 1.38629 1.38629 1.38629
1569 0.03534 4.05345 4.05345 1.46634 0.26236 0.00000 *
1570 1 2.09189 1.01591 0.96609 2.01061 1 - -
1571 1.38629 1.38629 1.38629 1.38629
1572 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547
1573 2 0.13263 3.45319 2.84909 3.36185 2 - -
1574 1.38629 1.38629 1.38629 1.38629
1575 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547
1576 3 3.16284 2.64227 3.20813 0.16716 3 - -
1577 1.38629 1.38629 1.38629 1.38629
1578 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547
1579 4 3.51693 0.12064 3.56276 2.88963 4 - -
1580 1.38629 1.38629 1.38629 1.38629
1581 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547
1582 5 2.99774 3.66122 0.10943 3.57364 5 - -
1583 1.38629 1.38629 1.38629 1.38629
1584 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547
1585 6 0.13263 3.45319 2.84909 3.36185 6 - -
1586 1.38629 1.38629 1.38629 1.38629
1587 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547
1588 7 3.51693 0.12064 3.56276 2.88963 7 - -
1589 1.38629 1.38629 1.38629 1.38629
1590 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547
1591 8 3.51693 0.12064 3.56276 2.88963 8 - -
1592 1.38629 1.38629 1.38629 1.38629
1593 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547
1594 9 3.16284 2.64227 3.20813 0.16716 9 - -
1595 1.38629 1.38629 1.38629 1.38629
1596 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547
1597 10 3.51693 0.12064 3.56276 2.88963 10 - -
1598 1.38629 1.38629 1.38629 1.38629
1599 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547
1600 11 0.13263 3.45319 2.84909 3.36185 11 - -
1601 1.38629 1.38629 1.38629 1.38629
1602 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547
1603 12 0.13263 3.45319 2.84909 3.36185 12 - -
1604 1.38629 1.38629 1.38629 1.38629
1605 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547
1606 13 0.13263 3.45319 2.84909 3.36185 13 - -
1607 1.38629 1.38629 1.38629 1.38629
1608 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547
1609 14 3.16284 2.64227 3.20813 0.16716 14 - -
1610 1.38629 1.38629 1.38629 1.38629
1611 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547
1612 15 3.51693 0.12064 3.56276 2.88963 15 - -
1613 1.38629 1.38629 1.38629 1.38629
1614 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547
1615 16 0.13263 3.45319 2.84909 3.36185 16 - -
1616 1.38629 1.38629 1.38629 1.38629
1617 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547
1618 17 0.13263 3.45319 2.84909 3.36185 17 - -
1619 1.38629 1.38629 1.38629 1.38629
1620 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547
1621 18 2.99774 3.66122 0.10943 3.57364 18 - -
1622 1.38629 1.38629 1.38629 1.38629
1623 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547
1624 19 3.16284 2.64227 3.20813 0.16716 19 - -
1625 1.38629 1.38629 1.38629 1.38629
1626 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547
1627 20 2.99774 3.66122 0.10943 3.57364 20 - -
1628 1.38629 1.38629 1.38629 1.38629
1629 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547
1630 21 0.13263 3.45319 2.84909 3.36185 21 - -
1631 1.38629 1.38629 1.38629 1.38629
1632 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547
1633 22 2.99774 3.66122 0.10943 3.57364 22 - -
1634 1.38629 1.38629 1.38629 1.38629
1635 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547
1636 23 0.13263 3.45319 2.84909 3.36185 23 - -
1637 1.38629 1.38629 1.38629 1.38629
1638 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547
1639 24 2.12338 2.17434 0.99832 0.92082 24 - -
1640 1.38629 1.38629 1.38629 1.38629
1641 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547
1642 25 3.16284 2.64227 3.20813 0.16716 25 - -
1643 1.38629 1.38629 1.38629 1.38629
1644 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547
1645 26 0.13263 3.45319 2.84909 3.36185 26 - -
1646 1.38629 1.38629 1.38629 1.38629
1647 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547
1648 27 3.51693 0.12064 3.56276 2.88963 27 - -
1649 1.38629 1.38629 1.38629 1.38629
1650 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547
1651 28 3.51693 0.12064 3.56276 2.88963 28 - -
1652 1.38629 1.38629 1.38629 1.38629
1653 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547
1654 29 3.51693 0.12064 3.56276 2.88963 29 - -
1655 1.38629 1.38629 1.38629 1.38629
1656 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547
1657 30 2.99774 3.66122 0.10943 3.57364 30 - -
1658 1.38629 1.38629 1.38629 1.38629
1659 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547
1660 31 3.51693 0.12064 3.56276 2.88963 31 - -
1661 1.38629 1.38629 1.38629 1.38629
1662 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547
1663 32 3.16284 2.64227 3.20813 0.16716 32 - -
1664 1.38629 1.38629 1.38629 1.38629
1665 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547
1666 33 2.99774 3.66122 0.10943 3.57364 33 - -
1667 1.38629 1.38629 1.38629 1.38629
1668 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547
1669 34 0.13263 3.45319 2.84909 3.36185 34 - -
1670 1.38629 1.38629 1.38629 1.38629
1671 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547
1672 35 0.13263 3.45319 2.84909 3.36185 35 - -
1673 1.38629 1.38629 1.38629 1.38629
1674 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547
1675 36 3.51693 0.12064 3.56276 2.88963 36 - -
1676 1.38629 1.38629 1.38629 1.38629
1677 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547
1678 37 3.16284 2.64227 3.20813 0.16716 37 - -
1679 1.38629 1.38629 1.38629 1.38629
1680 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547
1681 38 3.16284 2.64227 3.20813 0.16716 38 - -
1682 1.38629 1.38629 1.38629 1.38629
1683 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547
1684 39 0.13263 3.45319 2.84909 3.36185 39 - -
1685 1.38629 1.38629 1.38629 1.38629
1686 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547
1687 40 0.13263 3.45319 2.84909 3.36185 40 - -
1688 1.38629 1.38629 1.38629 1.38629
1689 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547
1690 41 2.99774 3.66122 0.10943 3.57364 41 - -
1691 1.38629 1.38629 1.38629 1.38629
1692 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547
1693 42 3.51693 0.12064 3.56276 2.88963 42 - -
1694 1.38629 1.38629 1.38629 1.38629
1695 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547
1696 43 0.13263 3.45319 2.84909 3.36185 43 - -
1697 1.38629 1.38629 1.38629 1.38629
1698 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547
1699 44 3.16284 2.64227 3.20813 0.16716 44 - -
1700 1.38629 1.38629 1.38629 1.38629
1701 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547
1702 45 0.13263 3.45319 2.84909 3.36185 45 - -
1703 1.38629 1.38629 1.38629 1.38629
1704 0.01783 4.03593 * 1.46634 0.26236 0.00000 *
1705 //
1706 HMMER3/b [3.0 | March 2010]
1707 NAME 4_LSU_Amoebozoa_4_LSU_start_onec_long
1708 LENG 45
1709 ALPH DNA
1710 RF no
1711 CS no
1712 MAP yes
1713 DATE Fri Jan 20 23:26:03 2012
1714 NSEQ 63
1715 EFFN 3.318420
1716 CKSUM 1512418120
1717 STATS LOCAL MSV -8.1399 0.71933
1718 STATS LOCAL VITERBI -7.6092 0.71933
1719 STATS LOCAL FORWARD -3.8899 0.71933
1720 HMM A C G T
1721 m->m m->i m->d i->m i->i d->m d->d
1722 COMPO 1.16320 1.31838 1.69977 1.43877
1723 1.38629 1.38629 1.38629 1.38629
1724 0.03692 4.01068 4.01068 1.46634 0.26236 0.00000 *
1725 1 3.02134 2.43366 3.07178 0.20186 1 - -
1726 1.38629 1.38629 1.38629 1.38629
1727 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547
1728 2 3.43153 0.13040 3.48106 2.82785 2 - -
1729 1.38629 1.38629 1.38629 1.38629
1730 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547
1731 3 0.14208 3.37890 2.80104 3.28043 3 - -
1732 1.38629 1.38629 1.38629 1.38629
1733 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547
1734 4 3.43153 0.13040 3.48106 2.82785 4 - -
1735 1.38629 1.38629 1.38629 1.38629
1736 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547
1737 5 2.94658 3.58637 0.11731 3.49090 5 - -
1738 1.38629 1.38629 1.38629 1.38629
1739 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547
1740 6 0.14208 3.37890 2.80104 3.28043 6 - -
1741 1.38629 1.38629 1.38629 1.38629
1742 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547
1743 7 3.43153 0.13040 3.48106 2.82785 7 - -
1744 1.38629 1.38629 1.38629 1.38629
1745 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547
1746 8 3.43153 0.13040 3.48106 2.82785 8 - -
1747 1.38629 1.38629 1.38629 1.38629
1748 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547
1749 9 3.08723 2.59426 3.13544 0.17890 9 - -
1750 1.38629 1.38629 1.38629 1.38629
1751 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547
1752 10 3.43153 0.13040 3.48106 2.82785 10 - -
1753 1.38629 1.38629 1.38629 1.38629
1754 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547
1755 11 0.14208 3.37890 2.80104 3.28043 11 - -
1756 1.38629 1.38629 1.38629 1.38629
1757 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547
1758 12 2.73608 2.52824 2.97503 0.21774 12 - -
1759 1.38629 1.38629 1.38629 1.38629
1760 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547
1761 13 0.14208 3.37890 2.80104 3.28043 13 - -
1762 1.38629 1.38629 1.38629 1.38629
1763 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547
1764 14 3.02134 2.43366 3.07178 0.20186 14 - -
1765 1.38629 1.38629 1.38629 1.38629
1766 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547
1767 15 3.43153 0.13040 3.48106 2.82785 15 - -
1768 1.38629 1.38629 1.38629 1.38629
1769 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547
1770 16 0.14208 3.37890 2.80104 3.28043 16 - -
1771 1.38629 1.38629 1.38629 1.38629
1772 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547
1773 17 0.14208 3.37890 2.80104 3.28043 17 - -
1774 1.38629 1.38629 1.38629 1.38629
1775 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547
1776 18 2.94658 3.58637 0.11731 3.49090 18 - -
1777 1.38629 1.38629 1.38629 1.38629
1778 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547
1779 19 3.08723 2.59426 3.13544 0.17890 19 - -
1780 1.38629 1.38629 1.38629 1.38629
1781 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547
1782 20 2.94658 3.58637 0.11731 3.49090 20 - -
1783 1.38629 1.38629 1.38629 1.38629
1784 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547
1785 21 0.14208 3.37890 2.80104 3.28043 21 - -
1786 1.38629 1.38629 1.38629 1.38629
1787 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547
1788 22 2.94658 3.58637 0.11731 3.49090 22 - -
1789 1.38629 1.38629 1.38629 1.38629
1790 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547
1791 23 0.14208 3.37890 2.80104 3.28043 23 - -
1792 1.38629 1.38629 1.38629 1.38629
1793 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547
1794 24 3.08723 2.59426 3.13544 0.17890 24 - -
1795 1.38629 1.38629 1.38629 1.38629
1796 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547
1797 25 3.08723 2.59426 3.13544 0.17890 25 - -
1798 1.38629 1.38629 1.38629 1.38629
1799 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547
1800 26 0.14208 3.37890 2.80104 3.28043 26 - -
1801 1.38629 1.38629 1.38629 1.38629
1802 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547
1803 27 3.43153 0.13040 3.48106 2.82785 27 - -
1804 1.38629 1.38629 1.38629 1.38629
1805 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547
1806 28 3.43153 0.13040 3.48106 2.82785 28 - -
1807 1.38629 1.38629 1.38629 1.38629
1808 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547
1809 29 3.43153 0.13040 3.48106 2.82785 29 - -
1810 1.38629 1.38629 1.38629 1.38629
1811 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547
1812 30 2.94658 3.58637 0.11731 3.49090 30 - -
1813 1.38629 1.38629 1.38629 1.38629
1814 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547
1815 31 3.43153 0.13040 3.48106 2.82785 31 - -
1816 1.38629 1.38629 1.38629 1.38629
1817 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547
1818 32 3.08723 2.59426 3.13544 0.17890 32 - -
1819 1.38629 1.38629 1.38629 1.38629
1820 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547
1821 33 2.94658 3.58637 0.11731 3.49090 33 - -
1822 1.38629 1.38629 1.38629 1.38629
1823 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547
1824 34 0.14208 3.37890 2.80104 3.28043 34 - -
1825 1.38629 1.38629 1.38629 1.38629
1826 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547
1827 35 0.14208 3.37890 2.80104 3.28043 35 - -
1828 1.38629 1.38629 1.38629 1.38629
1829 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547
1830 36 3.43153 0.13040 3.48106 2.82785 36 - -
1831 1.38629 1.38629 1.38629 1.38629
1832 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547
1833 37 3.08723 2.59426 3.13544 0.17890 37 - -
1834 1.38629 1.38629 1.38629 1.38629
1835 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547
1836 38 3.08723 2.59426 3.13544 0.17890 38 - -
1837 1.38629 1.38629 1.38629 1.38629
1838 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547
1839 39 0.14208 3.37890 2.80104 3.28043 39 - -
1840 1.38629 1.38629 1.38629 1.38629
1841 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547
1842 40 0.14208 3.37890 2.80104 3.28043 40 - -
1843 1.38629 1.38629 1.38629 1.38629
1844 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547
1845 41 2.89044 3.47872 0.12838 3.37899 41 - -
1846 1.38629 1.38629 1.38629 1.38629
1847 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547
1848 42 3.43153 0.13040 3.48106 2.82785 42 - -
1849 1.38629 1.38629 1.38629 1.38629
1850 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547
1851 43 0.14208 3.37890 2.80104 3.28043 43 - -
1852 1.38629 1.38629 1.38629 1.38629
1853 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547
1854 44 3.08723 2.59426 3.13544 0.17890 44 - -
1855 1.38629 1.38629 1.38629 1.38629
1856 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547
1857 45 0.14208 3.37890 2.80104 3.28043 45 - -
1858 1.38629 1.38629 1.38629 1.38629
1859 0.01863 3.99239 * 1.46634 0.26236 0.00000 *
1860 //
1861 HMMER3/b [3.0 | March 2010]
1862 NAME 4_LSU_Amoebozoa_4_LSU_start_oned_long
1863 LENG 45
1864 ALPH DNA
1865 RF no
1866 CS no
1867 MAP yes
1868 DATE Fri Jan 20 23:26:08 2012
1869 NSEQ 24
1870 EFFN 3.301758
1871 CKSUM 3316240930
1872 STATS LOCAL MSV -8.1199 0.71932
1873 STATS LOCAL VITERBI -7.7229 0.71932
1874 STATS LOCAL FORWARD -3.9195 0.71932
1875 HMM A C G T
1876 m->m m->i m->d i->m i->i d->m d->d
1877 COMPO 1.06159 1.38916 1.79405 1.43329
1878 1.38629 1.38629 1.38629 1.38629
1879 0.03703 4.00765 4.00765 1.46634 0.26236 0.00000 *
1880 1 3.08183 2.59083 3.13024 0.17977 1 - -
1881 1.38629 1.38629 1.38629 1.38629
1882 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1883 2 0.14279 3.37354 2.79756 3.27457 2 - -
1884 1.38629 1.38629 1.38629 1.38629
1885 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1886 3 3.08183 2.59083 3.13024 0.17977 3 - -
1887 1.38629 1.38629 1.38629 1.38629
1888 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1889 4 3.42536 0.13114 3.47515 2.82335 4 - -
1890 1.38629 1.38629 1.38629 1.38629
1891 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1892 5 0.14279 3.37354 2.79756 3.27457 5 - -
1893 1.38629 1.38629 1.38629 1.38629
1894 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1895 6 0.14279 3.37354 2.79756 3.27457 6 - -
1896 1.38629 1.38629 1.38629 1.38629
1897 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1898 7 3.42536 0.13114 3.47515 2.82335 7 - -
1899 1.38629 1.38629 1.38629 1.38629
1900 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1901 8 3.42536 0.13114 3.47515 2.82335 8 - -
1902 1.38629 1.38629 1.38629 1.38629
1903 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1904 9 3.08183 2.59083 3.13024 0.17977 9 - -
1905 1.38629 1.38629 1.38629 1.38629
1906 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1907 10 3.42536 0.13114 3.47515 2.82335 10 - -
1908 1.38629 1.38629 1.38629 1.38629
1909 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1910 11 0.14279 3.37354 2.79756 3.27457 11 - -
1911 1.38629 1.38629 1.38629 1.38629
1912 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1913 12 0.14279 3.37354 2.79756 3.27457 12 - -
1914 1.38629 1.38629 1.38629 1.38629
1915 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1916 13 0.14279 3.37354 2.79756 3.27457 13 - -
1917 1.38629 1.38629 1.38629 1.38629
1918 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1919 14 3.08183 2.59083 3.13024 0.17977 14 - -
1920 1.38629 1.38629 1.38629 1.38629
1921 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1922 15 3.42536 0.13114 3.47515 2.82335 15 - -
1923 1.38629 1.38629 1.38629 1.38629
1924 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1925 16 0.14279 3.37354 2.79756 3.27457 16 - -
1926 1.38629 1.38629 1.38629 1.38629
1927 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1928 17 0.14279 3.37354 2.79756 3.27457 17 - -
1929 1.38629 1.38629 1.38629 1.38629
1930 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1931 18 2.94283 3.58093 0.11791 3.48489 18 - -
1932 1.38629 1.38629 1.38629 1.38629
1933 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1934 19 3.08183 2.59083 3.13024 0.17977 19 - -
1935 1.38629 1.38629 1.38629 1.38629
1936 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1937 20 2.94283 3.58093 0.11791 3.48489 20 - -
1938 1.38629 1.38629 1.38629 1.38629
1939 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1940 21 0.14279 3.37354 2.79756 3.27457 21 - -
1941 1.38629 1.38629 1.38629 1.38629
1942 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1943 22 2.94283 3.58093 0.11791 3.48489 22 - -
1944 1.38629 1.38629 1.38629 1.38629
1945 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1946 23 0.14279 3.37354 2.79756 3.27457 23 - -
1947 1.38629 1.38629 1.38629 1.38629
1948 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1949 24 3.08183 2.59083 3.13024 0.17977 24 - -
1950 1.38629 1.38629 1.38629 1.38629
1951 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1952 25 3.08183 2.59083 3.13024 0.17977 25 - -
1953 1.38629 1.38629 1.38629 1.38629
1954 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1955 26 0.14279 3.37354 2.79756 3.27457 26 - -
1956 1.38629 1.38629 1.38629 1.38629
1957 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1958 27 3.42536 0.13114 3.47515 2.82335 27 - -
1959 1.38629 1.38629 1.38629 1.38629
1960 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1961 28 3.42536 0.13114 3.47515 2.82335 28 - -
1962 1.38629 1.38629 1.38629 1.38629
1963 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1964 29 3.42536 0.13114 3.47515 2.82335 29 - -
1965 1.38629 1.38629 1.38629 1.38629
1966 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1967 30 2.94283 3.58093 0.11791 3.48489 30 - -
1968 1.38629 1.38629 1.38629 1.38629
1969 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1970 31 3.42536 0.13114 3.47515 2.82335 31 - -
1971 1.38629 1.38629 1.38629 1.38629
1972 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1973 32 3.08183 2.59083 3.13024 0.17977 32 - -
1974 1.38629 1.38629 1.38629 1.38629
1975 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1976 33 2.94283 3.58093 0.11791 3.48489 33 - -
1977 1.38629 1.38629 1.38629 1.38629
1978 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1979 34 0.14279 3.37354 2.79756 3.27457 34 - -
1980 1.38629 1.38629 1.38629 1.38629
1981 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1982 35 0.14279 3.37354 2.79756 3.27457 35 - -
1983 1.38629 1.38629 1.38629 1.38629
1984 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1985 36 3.42536 0.13114 3.47515 2.82335 36 - -
1986 1.38629 1.38629 1.38629 1.38629
1987 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1988 37 3.08183 2.59083 3.13024 0.17977 37 - -
1989 1.38629 1.38629 1.38629 1.38629
1990 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1991 38 3.08183 2.59083 3.13024 0.17977 38 - -
1992 1.38629 1.38629 1.38629 1.38629
1993 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1994 39 0.14279 3.37354 2.79756 3.27457 39 - -
1995 1.38629 1.38629 1.38629 1.38629
1996 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
1997 40 0.14279 3.37354 2.79756 3.27457 40 - -
1998 1.38629 1.38629 1.38629 1.38629
1999 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
2000 41 2.94283 3.58093 0.11791 3.48489 41 - -
2001 1.38629 1.38629 1.38629 1.38629
2002 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
2003 42 3.42536 0.13114 3.47515 2.82335 42 - -
2004 1.38629 1.38629 1.38629 1.38629
2005 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
2006 43 0.14279 3.37354 2.79756 3.27457 43 - -
2007 1.38629 1.38629 1.38629 1.38629
2008 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
2009 44 3.08183 2.59083 3.13024 0.17977 44 - -
2010 1.38629 1.38629 1.38629 1.38629
2011 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
2012 45 0.14279 3.37354 2.79756 3.27457 45 - -
2013 1.38629 1.38629 1.38629 1.38629
2014 0.01869 3.98931 * 1.46634 0.26236 0.00000 *
2015 //
2016 HMMER3/b [3.0 | March 2010]
2017 NAME 4_LSU_Amoebozoa_4_LSU_start_threea_long
2018 LENG 45
2019 ALPH DNA
2020 RF no
2021 CS no
2022 MAP yes
2023 DATE Fri Jan 20 23:27:32 2012
2024 NSEQ 91
2025 EFFN 3.357513
2026 CKSUM 3218427169
2027 STATS LOCAL MSV -8.0690 0.71933
2028 STATS LOCAL VITERBI -7.5442 0.71933
2029 STATS LOCAL FORWARD -4.3497 0.71933
2030 HMM A C G T
2031 m->m m->i m->d i->m i->i d->m d->d
2032 COMPO 1.34181 1.24914 1.80713 1.24565
2033 1.38629 1.38629 1.38629 1.38629
2034 0.03665 4.01774 4.01774 1.46634 0.26236 0.00000 *
2035 1 0.14044 3.39135 2.80912 3.29407 1 - -
2036 1.38629 1.38629 1.38629 1.38629
2037 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547
2038 2 3.09981 2.60227 3.14754 0.17688 2 - -
2039 1.38629 1.38629 1.38629 1.38629
2040 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547
2041 3 3.09981 2.60227 3.14754 0.17688 3 - -
2042 1.38629 1.38629 1.38629 1.38629
2043 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547
2044 4 3.44588 0.12869 3.49480 2.83829 4 - -
2045 1.38629 1.38629 1.38629 1.38629
2046 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547
2047 5 3.44588 0.12869 3.49480 2.83829 5 - -
2048 1.38629 1.38629 1.38629 1.38629
2049 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547
2050 6 2.95525 3.59899 0.11594 3.50483 6 - -
2051 1.38629 1.38629 1.38629 1.38629
2052 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547
2053 7 3.44588 0.12869 3.49480 2.83829 7 - -
2054 1.38629 1.38629 1.38629 1.38629
2055 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547
2056 8 3.44588 0.12869 3.49480 2.83829 8 - -
2057 1.38629 1.38629 1.38629 1.38629
2058 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547
2059 9 3.09981 2.60227 3.14754 0.17688 9 - -
2060 1.38629 1.38629 1.38629 1.38629
2061 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547
2062 10 3.44588 0.12869 3.49480 2.83829 10 - -
2063 1.38629 1.38629 1.38629 1.38629
2064 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547
2065 11 0.14044 3.39135 2.80912 3.29407 11 - -
2066 1.38629 1.38629 1.38629 1.38629
2067 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547
2068 12 3.44588 0.12869 3.49480 2.83829 12 - -
2069 1.38629 1.38629 1.38629 1.38629
2070 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547
2071 13 3.44588 0.12869 3.49480 2.83829 13 - -
2072 1.38629 1.38629 1.38629 1.38629
2073 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547
2074 14 3.09981 2.60227 3.14754 0.17688 14 - -
2075 1.38629 1.38629 1.38629 1.38629
2076 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547
2077 15 3.09981 2.60227 3.14754 0.17688 15 - -
2078 1.38629 1.38629 1.38629 1.38629
2079 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547
2080 16 2.90007 2.52341 2.72811 0.22383 16 - -
2081 1.38629 1.38629 1.38629 1.38629
2082 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547
2083 17 2.95525 3.59899 0.11594 3.50483 17 - -
2084 1.38629 1.38629 1.38629 1.38629
2085 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547
2086 18 3.09981 2.60227 3.14754 0.17688 18 - -
2087 1.38629 1.38629 1.38629 1.38629
2088 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547
2089 19 0.14044 3.39135 2.80912 3.29407 19 - -
2090 1.38629 1.38629 1.38629 1.38629
2091 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547
2092 20 0.14044 3.39135 2.80912 3.29407 20 - -
2093 1.38629 1.38629 1.38629 1.38629
2094 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547
2095 21 2.95525 3.59899 0.11594 3.50483 21 - -
2096 1.38629 1.38629 1.38629 1.38629
2097 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547
2098 22 0.14044 3.39135 2.80912 3.29407 22 - -
2099 1.38629 1.38629 1.38629 1.38629
2100 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547
2101 23 3.09981 2.60227 3.14754 0.17688 23 - -
2102 1.38629 1.38629 1.38629 1.38629
2103 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547
2104 24 3.09981 2.60227 3.14754 0.17688 24 - -
2105 1.38629 1.38629 1.38629 1.38629
2106 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547
2107 25 0.14044 3.39135 2.80912 3.29407 25 - -
2108 1.38629 1.38629 1.38629 1.38629
2109 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547
2110 26 3.44588 0.12869 3.49480 2.83829 26 - -
2111 1.38629 1.38629 1.38629 1.38629
2112 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547
2113 27 3.44588 0.12869 3.49480 2.83829 27 - -
2114 1.38629 1.38629 1.38629 1.38629
2115 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547
2116 28 3.44588 0.12869 3.49480 2.83829 28 - -
2117 1.38629 1.38629 1.38629 1.38629
2118 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547
2119 29 2.95525 3.59899 0.11594 3.50483 29 - -
2120 1.38629 1.38629 1.38629 1.38629
2121 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547
2122 30 3.44588 0.12869 3.49480 2.83829 30 - -
2123 1.38629 1.38629 1.38629 1.38629
2124 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547
2125 31 3.09981 2.60227 3.14754 0.17688 31 - -
2126 1.38629 1.38629 1.38629 1.38629
2127 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547
2128 32 2.95525 3.59899 0.11594 3.50483 32 - -
2129 1.38629 1.38629 1.38629 1.38629
2130 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547
2131 33 0.14044 3.39135 2.80912 3.29407 33 - -
2132 1.38629 1.38629 1.38629 1.38629
2133 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547
2134 34 0.14044 3.39135 2.80912 3.29407 34 - -
2135 1.38629 1.38629 1.38629 1.38629
2136 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547
2137 35 3.44588 0.12869 3.49480 2.83829 35 - -
2138 1.38629 1.38629 1.38629 1.38629
2139 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547
2140 36 3.09981 2.60227 3.14754 0.17688 36 - -
2141 1.38629 1.38629 1.38629 1.38629
2142 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547
2143 37 3.09981 2.60227 3.14754 0.17688 37 - -
2144 1.38629 1.38629 1.38629 1.38629
2145 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547
2146 38 0.14044 3.39135 2.80912 3.29407 38 - -
2147 1.38629 1.38629 1.38629 1.38629
2148 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547
2149 39 0.14044 3.39135 2.80912 3.29407 39 - -
2150 1.38629 1.38629 1.38629 1.38629
2151 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547
2152 40 2.95525 3.59899 0.11594 3.50483 40 - -
2153 1.38629 1.38629 1.38629 1.38629
2154 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547
2155 41 3.44588 0.12869 3.49480 2.83829 41 - -
2156 1.38629 1.38629 1.38629 1.38629
2157 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547
2158 42 0.14044 3.39135 2.80912 3.29407 42 - -
2159 1.38629 1.38629 1.38629 1.38629
2160 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547
2161 43 3.09981 2.60227 3.14754 0.17688 43 - -
2162 1.38629 1.38629 1.38629 1.38629
2163 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547
2164 44 0.14044 3.39135 2.80912 3.29407 44 - -
2165 1.38629 1.38629 1.38629 1.38629
2166 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547
2167 45 3.09981 2.60227 3.14754 0.17688 45 - -
2168 1.38629 1.38629 1.38629 1.38629
2169 0.01849 3.99958 * 1.46634 0.26236 0.00000 *
2170 //
2171 HMMER3/b [3.0 | March 2010]
2172 NAME 4_LSU_Amoebozoa_4_LSU_start_threeb_long
2173 LENG 45
2174 ALPH DNA
2175 RF no
2176 CS no
2177 MAP yes
2178 DATE Fri Jan 20 23:27:39 2012
2179 NSEQ 37
2180 EFFN 3.355835
2181 CKSUM 748456799
2182 STATS LOCAL MSV -8.0028 0.71934
2183 STATS LOCAL VITERBI -7.6102 0.71934
2184 STATS LOCAL FORWARD -4.0065 0.71934
2185 HMM A C G T
2186 m->m m->i m->d i->m i->i d->m d->d
2187 COMPO 1.21748 1.37885 1.69924 1.31180
2188 1.38629 1.38629 1.38629 1.38629
2189 0.03666 4.01743 4.01743 1.46634 0.26236 0.00000 *
2190 1 0.14051 3.39082 2.80878 3.29348 1 - -
2191 1.38629 1.38629 1.38629 1.38629
2192 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547
2193 2 3.09928 2.60192 3.14702 0.17697 2 - -
2194 1.38629 1.38629 1.38629 1.38629
2195 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547
2196 3 2.95488 3.59846 0.11600 3.50424 3 - -
2197 1.38629 1.38629 1.38629 1.38629
2198 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547
2199 4 3.09928 2.60192 3.14702 0.17697 4 - -
2200 1.38629 1.38629 1.38629 1.38629
2201 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547
2202 5 3.09928 2.60192 3.14702 0.17697 5 - -
2203 1.38629 1.38629 1.38629 1.38629
2204 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547
2205 6 2.95488 3.59846 0.11600 3.50424 6 - -
2206 1.38629 1.38629 1.38629 1.38629
2207 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547
2208 7 3.44527 0.12877 3.49421 2.83784 7 - -
2209 1.38629 1.38629 1.38629 1.38629
2210 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547
2211 8 3.44527 0.12877 3.49421 2.83784 8 - -
2212 1.38629 1.38629 1.38629 1.38629
2213 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547
2214 9 3.09928 2.60192 3.14702 0.17697 9 - -
2215 1.38629 1.38629 1.38629 1.38629
2216 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547
2217 10 3.44527 0.12877 3.49421 2.83784 10 - -
2218 1.38629 1.38629 1.38629 1.38629
2219 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547
2220 11 0.14051 3.39082 2.80878 3.29348 11 - -
2221 1.38629 1.38629 1.38629 1.38629
2222 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547
2223 12 3.09928 2.60192 3.14702 0.17697 12 - -
2224 1.38629 1.38629 1.38629 1.38629
2225 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547
2226 13 3.44527 0.12877 3.49421 2.83784 13 - -
2227 1.38629 1.38629 1.38629 1.38629
2228 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547
2229 14 2.83510 2.01766 2.89263 0.28384 14 - -
2230 1.38629 1.38629 1.38629 1.38629
2231 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547
2232 15 0.14051 3.39082 2.80878 3.29348 15 - -
2233 1.38629 1.38629 1.38629 1.38629
2234 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547
2235 16 0.14051 3.39082 2.80878 3.29348 16 - -
2236 1.38629 1.38629 1.38629 1.38629
2237 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547
2238 17 2.95488 3.59846 0.11600 3.50424 17 - -
2239 1.38629 1.38629 1.38629 1.38629
2240 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547
2241 18 3.09928 2.60192 3.14702 0.17697 18 - -
2242 1.38629 1.38629 1.38629 1.38629
2243 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547
2244 19 0.14051 3.39082 2.80878 3.29348 19 - -
2245 1.38629 1.38629 1.38629 1.38629
2246 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547
2247 20 0.14051 3.39082 2.80878 3.29348 20 - -
2248 1.38629 1.38629 1.38629 1.38629
2249 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547
2250 21 2.95488 3.59846 0.11600 3.50424 21 - -
2251 1.38629 1.38629 1.38629 1.38629
2252 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547
2253 22 0.14051 3.39082 2.80878 3.29348 22 - -
2254 1.38629 1.38629 1.38629 1.38629
2255 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547
2256 23 3.44527 0.12877 3.49421 2.83784 23 - -
2257 1.38629 1.38629 1.38629 1.38629
2258 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547
2259 24 3.09928 2.60192 3.14702 0.17697 24 - -
2260 1.38629 1.38629 1.38629 1.38629
2261 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547
2262 25 0.14051 3.39082 2.80878 3.29348 25 - -
2263 1.38629 1.38629 1.38629 1.38629
2264 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547
2265 26 3.44527 0.12877 3.49421 2.83784 26 - -
2266 1.38629 1.38629 1.38629 1.38629
2267 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547
2268 27 3.44527 0.12877 3.49421 2.83784 27 - -
2269 1.38629 1.38629 1.38629 1.38629
2270 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547
2271 28 3.44527 0.12877 3.49421 2.83784 28 - -
2272 1.38629 1.38629 1.38629 1.38629
2273 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547
2274 29 2.95488 3.59846 0.11600 3.50424 29 - -
2275 1.38629 1.38629 1.38629 1.38629
2276 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547
2277 30 3.44527 0.12877 3.49421 2.83784 30 - -
2278 1.38629 1.38629 1.38629 1.38629
2279 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547
2280 31 3.09928 2.60192 3.14702 0.17697 31 - -
2281 1.38629 1.38629 1.38629 1.38629
2282 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547
2283 32 2.95488 3.59846 0.11600 3.50424 32 - -
2284 1.38629 1.38629 1.38629 1.38629
2285 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547
2286 33 0.14051 3.39082 2.80878 3.29348 33 - -
2287 1.38629 1.38629 1.38629 1.38629
2288 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547
2289 34 0.14051 3.39082 2.80878 3.29348 34 - -
2290 1.38629 1.38629 1.38629 1.38629
2291 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547
2292 35 3.44527 0.12877 3.49421 2.83784 35 - -
2293 1.38629 1.38629 1.38629 1.38629
2294 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547
2295 36 3.09928 2.60192 3.14702 0.17697 36 - -
2296 1.38629 1.38629 1.38629 1.38629
2297 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547
2298 37 3.09928 2.60192 3.14702 0.17697 37 - -
2299 1.38629 1.38629 1.38629 1.38629
2300 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547
2301 38 0.14051 3.39082 2.80878 3.29348 38 - -
2302 1.38629 1.38629 1.38629 1.38629
2303 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547
2304 39 0.14051 3.39082 2.80878 3.29348 39 - -
2305 1.38629 1.38629 1.38629 1.38629
2306 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547
2307 40 2.95488 3.59846 0.11600 3.50424 40 - -
2308 1.38629 1.38629 1.38629 1.38629
2309 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547
2310 41 3.44527 0.12877 3.49421 2.83784 41 - -
2311 1.38629 1.38629 1.38629 1.38629
2312 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547
2313 42 0.14051 3.39082 2.80878 3.29348 42 - -
2314 1.38629 1.38629 1.38629 1.38629
2315 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547
2316 43 3.09928 2.60192 3.14702 0.17697 43 - -
2317 1.38629 1.38629 1.38629 1.38629
2318 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547
2319 44 0.14051 3.39082 2.80878 3.29348 44 - -
2320 1.38629 1.38629 1.38629 1.38629
2321 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547
2322 45 3.09928 2.60192 3.14702 0.17697 45 - -
2323 1.38629 1.38629 1.38629 1.38629
2324 0.01850 3.99927 * 1.46634 0.26236 0.00000 *
2325 //
2326 HMMER3/b [3.0 | March 2010]
2327 NAME 4_LSU_Amoebozoa_4_LSU_start_threec_long
2328 LENG 45
2329 ALPH DNA
2330 RF no
2331 CS no
2332 MAP yes
2333 DATE Fri Jan 20 23:27:48 2012
2334 NSEQ 24
2335 EFFN 3.301758
2336 CKSUM 2052849582
2337 STATS LOCAL MSV -8.0328 0.71932
2338 STATS LOCAL VITERBI -7.7296 0.71932
2339 STATS LOCAL FORWARD -4.1535 0.71932
2340 HMM A C G T
2341 m->m m->i m->d i->m i->i d->m d->d
2342 COMPO 1.34051 1.31747 1.61312 1.30486
2343 1.38629 1.38629 1.38629 1.38629
2344 0.03703 4.00765 4.00765 1.46634 0.26236 0.00000 *
2345 1 0.14279 3.37354 2.79756 3.27457 1 - -
2346 1.38629 1.38629 1.38629 1.38629
2347 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
2348 2 3.08183 2.59083 3.13024 0.17977 2 - -
2349 1.38629 1.38629 1.38629 1.38629
2350 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
2351 3 2.94283 3.58093 0.11791 3.48489 3 - -
2352 1.38629 1.38629 1.38629 1.38629
2353 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
2354 4 3.08183 2.59083 3.13024 0.17977 4 - -
2355 1.38629 1.38629 1.38629 1.38629
2356 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
2357 5 3.08183 2.59083 3.13024 0.17977 5 - -
2358 1.38629 1.38629 1.38629 1.38629
2359 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
2360 6 2.94283 3.58093 0.11791 3.48489 6 - -
2361 1.38629 1.38629 1.38629 1.38629
2362 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
2363 7 3.42536 0.13114 3.47515 2.82335 7 - -
2364 1.38629 1.38629 1.38629 1.38629
2365 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
2366 8 3.42536 0.13114 3.47515 2.82335 8 - -
2367 1.38629 1.38629 1.38629 1.38629
2368 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
2369 9 3.08183 2.59083 3.13024 0.17977 9 - -
2370 1.38629 1.38629 1.38629 1.38629
2371 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
2372 10 3.42536 0.13114 3.47515 2.82335 10 - -
2373 1.38629 1.38629 1.38629 1.38629
2374 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
2375 11 0.14279 3.37354 2.79756 3.27457 11 - -
2376 1.38629 1.38629 1.38629 1.38629
2377 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
2378 12 3.42536 0.13114 3.47515 2.82335 12 - -
2379 1.38629 1.38629 1.38629 1.38629
2380 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
2381 13 3.42536 0.13114 3.47515 2.82335 13 - -
2382 1.38629 1.38629 1.38629 1.38629
2383 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
2384 14 3.08183 2.59083 3.13024 0.17977 14 - -
2385 1.38629 1.38629 1.38629 1.38629
2386 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
2387 15 3.08183 2.59083 3.13024 0.17977 15 - -
2388 1.38629 1.38629 1.38629 1.38629
2389 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
2390 16 2.94283 3.58093 0.11791 3.48489 16 - -
2391 1.38629 1.38629 1.38629 1.38629
2392 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
2393 17 2.94283 3.58093 0.11791 3.48489 17 - -
2394 1.38629 1.38629 1.38629 1.38629
2395 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
2396 18 3.08183 2.59083 3.13024 0.17977 18 - -
2397 1.38629 1.38629 1.38629 1.38629
2398 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
2399 19 0.14279 3.37354 2.79756 3.27457 19 - -
2400 1.38629 1.38629 1.38629 1.38629
2401 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
2402 20 0.14279 3.37354 2.79756 3.27457 20 - -
2403 1.38629 1.38629 1.38629 1.38629
2404 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
2405 21 2.94283 3.58093 0.11791 3.48489 21 - -
2406 1.38629 1.38629 1.38629 1.38629
2407 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
2408 22 0.14279 3.37354 2.79756 3.27457 22 - -
2409 1.38629 1.38629 1.38629 1.38629
2410 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
2411 23 3.42536 0.13114 3.47515 2.82335 23 - -
2412 1.38629 1.38629 1.38629 1.38629
2413 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
2414 24 3.08183 2.59083 3.13024 0.17977 24 - -
2415 1.38629 1.38629 1.38629 1.38629
2416 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
2417 25 0.14279 3.37354 2.79756 3.27457 25 - -
2418 1.38629 1.38629 1.38629 1.38629
2419 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
2420 26 3.42536 0.13114 3.47515 2.82335 26 - -
2421 1.38629 1.38629 1.38629 1.38629
2422 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
2423 27 3.42536 0.13114 3.47515 2.82335 27 - -
2424 1.38629 1.38629 1.38629 1.38629
2425 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
2426 28 3.42536 0.13114 3.47515 2.82335 28 - -
2427 1.38629 1.38629 1.38629 1.38629
2428 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
2429 29 2.94283 3.58093 0.11791 3.48489 29 - -
2430 1.38629 1.38629 1.38629 1.38629
2431 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
2432 30 3.42536 0.13114 3.47515 2.82335 30 - -
2433 1.38629 1.38629 1.38629 1.38629
2434 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
2435 31 3.08183 2.59083 3.13024 0.17977 31 - -
2436 1.38629 1.38629 1.38629 1.38629
2437 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
2438 32 2.94283 3.58093 0.11791 3.48489 32 - -
2439 1.38629 1.38629 1.38629 1.38629
2440 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
2441 33 0.14279 3.37354 2.79756 3.27457 33 - -
2442 1.38629 1.38629 1.38629 1.38629
2443 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
2444 34 0.14279 3.37354 2.79756 3.27457 34 - -
2445 1.38629 1.38629 1.38629 1.38629
2446 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
2447 35 3.42536 0.13114 3.47515 2.82335 35 - -
2448 1.38629 1.38629 1.38629 1.38629
2449 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
2450 36 3.08183 2.59083 3.13024 0.17977 36 - -
2451 1.38629 1.38629 1.38629 1.38629
2452 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
2453 37 3.08183 2.59083 3.13024 0.17977 37 - -
2454 1.38629 1.38629 1.38629 1.38629
2455 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
2456 38 0.14279 3.37354 2.79756 3.27457 38 - -
2457 1.38629 1.38629 1.38629 1.38629
2458 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
2459 39 0.14279 3.37354 2.79756 3.27457 39 - -
2460 1.38629 1.38629 1.38629 1.38629
2461 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
2462 40 2.94283 3.58093 0.11791 3.48489 40 - -
2463 1.38629 1.38629 1.38629 1.38629
2464 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
2465 41 3.42536 0.13114 3.47515 2.82335 41 - -
2466 1.38629 1.38629 1.38629 1.38629
2467 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
2468 42 0.14279 3.37354 2.79756 3.27457 42 - -
2469 1.38629 1.38629 1.38629 1.38629
2470 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
2471 43 3.08183 2.59083 3.13024 0.17977 43 - -
2472 1.38629 1.38629 1.38629 1.38629
2473 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
2474 44 0.14279 3.37354 2.79756 3.27457 44 - -
2475 1.38629 1.38629 1.38629 1.38629
2476 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547
2477 45 3.08183 2.59083 3.13024 0.17977 45 - -
2478 1.38629 1.38629 1.38629 1.38629
2479 0.01869 3.98931 * 1.46634 0.26236 0.00000 *
2480 //
2481 HMMER3/b [3.0 | March 2010]
2482 NAME 4_LSU_Amoebozoa_4_LSU_start_two_long
2483 LENG 45
2484 ALPH DNA
2485 RF no
2486 CS no
2487 MAP yes
2488 DATE Fri Jan 20 23:27:18 2012
2489 NSEQ 90
2490 EFFN 3.589783
2491 CKSUM 608676318
2492 STATS LOCAL MSV -7.8555 0.71932
2493 STATS LOCAL VITERBI -7.7531 0.71932
2494 STATS LOCAL FORWARD -4.2533 0.71932
2495 HMM A C G T
2496 m->m m->i m->d i->m i->i d->m d->d
2497 COMPO 1.23957 1.30603 1.77951 1.30608
2498 1.38629 1.38629 1.38629 1.38629
2499 0.03515 4.05868 4.05868 1.46634 0.26236 0.00000 *
2500 1 0.67175 2.28147 2.23032 1.27454 1 - -
2501 1.38629 1.38629 1.38629 1.38629
2502 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547
2503 2 3.17198 2.64807 3.21692 0.16580 2 - -
2504 1.38629 1.38629 1.38629 1.38629
2505 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547
2506 3 2.21370 2.19922 1.35245 0.65160 3 - -
2507 1.38629 1.38629 1.38629 1.38629
2508 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547
2509 4 3.17198 2.64807 3.21692 0.16580 4 - -
2510 1.38629 1.38629 1.38629 1.38629
2511 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547
2512 5 3.52713 0.11953 3.57250 2.89695 5 - -
2513 1.38629 1.38629 1.38629 1.38629
2514 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547
2515 6 3.00378 3.67011 0.10853 3.58348 6 - -
2516 1.38629 1.38629 1.38629 1.38629
2517 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547
2518 7 3.52713 0.11953 3.57250 2.89695 7 - -
2519 1.38629 1.38629 1.38629 1.38629
2520 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547
2521 8 3.52713 0.11953 3.57250 2.89695 8 - -
2522 1.38629 1.38629 1.38629 1.38629
2523 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547
2524 9 3.17198 2.64807 3.21692 0.16580 9 - -
2525 1.38629 1.38629 1.38629 1.38629
2526 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547
2527 10 3.52713 0.11953 3.57250 2.89695 10 - -
2528 1.38629 1.38629 1.38629 1.38629
2529 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547
2530 11 0.13155 3.46209 2.85482 3.37161 11 - -
2531 1.38629 1.38629 1.38629 1.38629
2532 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547
2533 12 3.17198 2.64807 3.21692 0.16580 12 - -
2534 1.38629 1.38629 1.38629 1.38629
2535 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547
2536 13 3.52713 0.11953 3.57250 2.89695 13 - -
2537 1.38629 1.38629 1.38629 1.38629
2538 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547
2539 14 3.52713 0.11953 3.57250 2.89695 14 - -
2540 1.38629 1.38629 1.38629 1.38629
2541 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547
2542 15 0.13155 3.46209 2.85482 3.37161 15 - -
2543 1.38629 1.38629 1.38629 1.38629
2544 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547
2545 16 0.13155 3.46209 2.85482 3.37161 16 - -
2546 1.38629 1.38629 1.38629 1.38629
2547 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547
2548 17 3.00378 3.67011 0.10853 3.58348 17 - -
2549 1.38629 1.38629 1.38629 1.38629
2550 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547
2551 18 3.17198 2.64807 3.21692 0.16580 18 - -
2552 1.38629 1.38629 1.38629 1.38629
2553 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547
2554 19 0.13155 3.46209 2.85482 3.37161 19 - -
2555 1.38629 1.38629 1.38629 1.38629
2556 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547
2557 20 0.13155 3.46209 2.85482 3.37161 20 - -
2558 1.38629 1.38629 1.38629 1.38629
2559 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547
2560 21 3.00378 3.67011 0.10853 3.58348 21 - -
2561 1.38629 1.38629 1.38629 1.38629
2562 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547
2563 22 0.13155 3.46209 2.85482 3.37161 22 - -
2564 1.38629 1.38629 1.38629 1.38629
2565 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547
2566 23 3.17198 2.64807 3.21692 0.16580 23 - -
2567 1.38629 1.38629 1.38629 1.38629
2568 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547
2569 24 3.17198 2.64807 3.21692 0.16580 24 - -
2570 1.38629 1.38629 1.38629 1.38629
2571 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547
2572 25 0.13155 3.46209 2.85482 3.37161 25 - -
2573 1.38629 1.38629 1.38629 1.38629
2574 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547
2575 26 3.52713 0.11953 3.57250 2.89695 26 - -
2576 1.38629 1.38629 1.38629 1.38629
2577 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547
2578 27 3.52713 0.11953 3.57250 2.89695 27 - -
2579 1.38629 1.38629 1.38629 1.38629
2580 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547
2581 28 3.52713 0.11953 3.57250 2.89695 28 - -
2582 1.38629 1.38629 1.38629 1.38629
2583 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547
2584 29 3.00378 3.67011 0.10853 3.58348 29 - -
2585 1.38629 1.38629 1.38629 1.38629
2586 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547
2587 30 3.52713 0.11953 3.57250 2.89695 30 - -
2588 1.38629 1.38629 1.38629 1.38629
2589 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547
2590 31 3.17198 2.64807 3.21692 0.16580 31 - -
2591 1.38629 1.38629 1.38629 1.38629
2592 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547
2593 32 3.00378 3.67011 0.10853 3.58348 32 - -
2594 1.38629 1.38629 1.38629 1.38629
2595 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547
2596 33 0.13155 3.46209 2.85482 3.37161 33 - -
2597 1.38629 1.38629 1.38629 1.38629
2598 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547
2599 34 0.13155 3.46209 2.85482 3.37161 34 - -
2600 1.38629 1.38629 1.38629 1.38629
2601 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547
2602 35 3.52713 0.11953 3.57250 2.89695 35 - -
2603 1.38629 1.38629 1.38629 1.38629
2604 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547
2605 36 3.17198 2.64807 3.21692 0.16580 36 - -
2606 1.38629 1.38629 1.38629 1.38629
2607 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547
2608 37 3.17198 2.64807 3.21692 0.16580 37 - -
2609 1.38629 1.38629 1.38629 1.38629
2610 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547
2611 38 0.13155 3.46209 2.85482 3.37161 38 - -
2612 1.38629 1.38629 1.38629 1.38629
2613 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547
2614 39 0.13155 3.46209 2.85482 3.37161 39 - -
2615 1.38629 1.38629 1.38629 1.38629
2616 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547
2617 40 3.00378 3.67011 0.10853 3.58348 40 - -
2618 1.38629 1.38629 1.38629 1.38629
2619 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547
2620 41 3.52713 0.11953 3.57250 2.89695 41 - -
2621 1.38629 1.38629 1.38629 1.38629
2622 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547
2623 42 0.13155 3.46209 2.85482 3.37161 42 - -
2624 1.38629 1.38629 1.38629 1.38629
2625 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547
2626 43 3.17198 2.64807 3.21692 0.16580 43 - -
2627 1.38629 1.38629 1.38629 1.38629
2628 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547
2629 44 0.13155 3.46209 2.85482 3.37161 44 - -
2630 1.38629 1.38629 1.38629 1.38629
2631 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547
2632 45 3.17198 2.64807 3.21692 0.16580 45 - -
2633 1.38629 1.38629 1.38629 1.38629
2634 0.01773 4.04126 * 1.46634 0.26236 0.00000 *
2635 //
2636 HMMER3/b [3.0 | March 2010]
2637 NAME 1_SSU_Amoebozoa_1_SSU_end_onea_long
2638 LENG 45
2639 ALPH DNA
2640 RF no
2641 CS no
2642 MAP yes
2643 DATE Fri Jan 20 22:26:03 2012
2644 NSEQ 50
2645 EFFN 3.311157
2646 CKSUM 580143303
2647 STATS LOCAL MSV -8.0808 0.71933
2648 STATS LOCAL VITERBI -7.6783 0.71933
2649 STATS LOCAL FORWARD -4.0882 0.71933
2650 HMM A C G T
2651 m->m m->i m->d i->m i->i d->m d->d
2652 COMPO 1.26882 1.71702 1.24405 1.38222
2653 1.38629 1.38629 1.38629 1.38629
2654 0.03696 4.00936 4.00936 1.46634 0.26236 0.00000 *
2655 1 0.14238 3.37657 2.79952 3.27788 1 - -
2656 1.38629 1.38629 1.38629 1.38629
2657 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547
2658 2 2.94495 3.58400 0.11757 3.48828 2 - -
2659 1.38629 1.38629 1.38629 1.38629
2660 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547
2661 3 3.01055 2.41279 3.06138 0.20537 3 - -
2662 1.38629 1.38629 1.38629 1.38629
2663 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547
2664 4 3.42885 0.13072 3.47849 2.82590 4 - -
2665 1.38629 1.38629 1.38629 1.38629
2666 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547
2667 5 2.94495 3.58400 0.11757 3.48828 5 - -
2668 1.38629 1.38629 1.38629 1.38629
2669 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547
2670 6 3.01055 2.41279 3.06138 0.20537 6 - -
2671 1.38629 1.38629 1.38629 1.38629
2672 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547
2673 7 0.14238 3.37657 2.79952 3.27788 7 - -
2674 1.38629 1.38629 1.38629 1.38629
2675 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547
2676 8 0.14238 3.37657 2.79952 3.27788 8 - -
2677 1.38629 1.38629 1.38629 1.38629
2678 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547
2679 9 3.42885 0.13072 3.47849 2.82590 9 - -
2680 1.38629 1.38629 1.38629 1.38629
2681 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547
2682 10 0.14238 3.37657 2.79952 3.27788 10 - -
2683 1.38629 1.38629 1.38629 1.38629
2684 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547
2685 11 0.14238 3.37657 2.79952 3.27788 11 - -
2686 1.38629 1.38629 1.38629 1.38629
2687 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547
2688 12 2.94495 3.58400 0.11757 3.48828 12 - -
2689 1.38629 1.38629 1.38629 1.38629
2690 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547
2691 13 2.94495 3.58400 0.11757 3.48828 13 - -
2692 1.38629 1.38629 1.38629 1.38629
2693 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547
2694 14 3.08488 2.59277 3.13318 0.17928 14 - -
2695 1.38629 1.38629 1.38629 1.38629
2696 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547
2697 15 0.14238 3.37657 2.79952 3.27788 15 - -
2698 1.38629 1.38629 1.38629 1.38629
2699 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547
2700 16 3.08488 2.59277 3.13318 0.17928 16 - -
2701 1.38629 1.38629 1.38629 1.38629
2702 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547
2703 17 3.08488 2.59277 3.13318 0.17928 17 - -
2704 1.38629 1.38629 1.38629 1.38629
2705 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547
2706 18 3.24463 0.17310 3.29975 2.48809 18 - -
2707 1.38629 1.38629 1.38629 1.38629
2708 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547
2709 19 2.94495 3.58400 0.11757 3.48828 19 - -
2710 1.38629 1.38629 1.38629 1.38629
2711 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547
2712 20 3.08488 2.59277 3.13318 0.17928 20 - -
2713 1.38629 1.38629 1.38629 1.38629
2714 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547
2715 21 0.14238 3.37657 2.79952 3.27788 21 - -
2716 1.38629 1.38629 1.38629 1.38629
2717 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547
2718 22 2.94495 3.58400 0.11757 3.48828 22 - -
2719 1.38629 1.38629 1.38629 1.38629
2720 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547
2721 23 2.94495 3.58400 0.11757 3.48828 23 - -
2722 1.38629 1.38629 1.38629 1.38629
2723 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547
2724 24 3.08488 2.59277 3.13318 0.17928 24 - -
2725 1.38629 1.38629 1.38629 1.38629
2726 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547
2727 25 2.94495 3.58400 0.11757 3.48828 25 - -
2728 1.38629 1.38629 1.38629 1.38629
2729 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547
2730 26 0.14238 3.37657 2.79952 3.27788 26 - -
2731 1.38629 1.38629 1.38629 1.38629
2732 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547
2733 27 0.14238 3.37657 2.79952 3.27788 27 - -
2734 1.38629 1.38629 1.38629 1.38629
2735 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547
2736 28 3.42885 0.13072 3.47849 2.82590 28 - -
2737 1.38629 1.38629 1.38629 1.38629
2738 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547
2739 29 3.42885 0.13072 3.47849 2.82590 29 - -
2740 1.38629 1.38629 1.38629 1.38629
2741 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547
2742 30 3.01055 2.41279 3.06138 0.20537 30 - -
2743 1.38629 1.38629 1.38629 1.38629
2744 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547
2745 31 2.94495 3.58400 0.11757 3.48828 31 - -
2746 1.38629 1.38629 1.38629 1.38629
2747 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547
2748 32 3.31480 0.15590 3.36776 2.60981 32 - -
2749 1.38629 1.38629 1.38629 1.38629
2750 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547
2751 33 2.94495 3.58400 0.11757 3.48828 33 - -
2752 1.38629 1.38629 1.38629 1.38629
2753 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547
2754 34 2.94495 3.58400 0.11757 3.48828 34 - -
2755 1.38629 1.38629 1.38629 1.38629
2756 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547
2757 35 0.14238 3.37657 2.79952 3.27788 35 - -
2758 1.38629 1.38629 1.38629 1.38629
2759 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547
2760 36 3.08488 2.59277 3.13318 0.17928 36 - -
2761 1.38629 1.38629 1.38629 1.38629
2762 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547
2763 37 2.94495 3.58400 0.11757 3.48828 37 - -
2764 1.38629 1.38629 1.38629 1.38629
2765 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547
2766 38 2.94495 3.58400 0.11757 3.48828 38 - -
2767 1.38629 1.38629 1.38629 1.38629
2768 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547
2769 39 0.14238 3.37657 2.79952 3.27788 39 - -
2770 1.38629 1.38629 1.38629 1.38629
2771 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547
2772 40 3.08488 2.59277 3.13318 0.17928 40 - -
2773 1.38629 1.38629 1.38629 1.38629
2774 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547
2775 41 3.42885 0.13072 3.47849 2.82590 41 - -
2776 1.38629 1.38629 1.38629 1.38629
2777 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547
2778 42 0.14238 3.37657 2.79952 3.27788 42 - -
2779 1.38629 1.38629 1.38629 1.38629
2780 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547
2781 43 3.08488 2.59277 3.13318 0.17928 43 - -
2782 1.38629 1.38629 1.38629 1.38629
2783 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547
2784 44 3.08488 2.59277 3.13318 0.17928 44 - -
2785 1.38629 1.38629 1.38629 1.38629
2786 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547
2787 45 0.14238 3.37657 2.79952 3.27788 45 - -
2788 1.38629 1.38629 1.38629 1.38629
2789 0.01865 3.99105 * 1.46634 0.26236 0.00000 *
2790 //
2791 HMMER3/b [3.0 | March 2010]
2792 NAME 1_SSU_Amoebozoa_1_SSU_end_oneb_long
2793 LENG 45
2794 ALPH DNA
2795 RF no
2796 CS no
2797 MAP yes
2798 DATE Fri Jan 20 22:26:13 2012
2799 NSEQ 12
2800 EFFN 3.477539
2801 CKSUM 3078232557
2802 STATS LOCAL MSV -7.3971 0.71932
2803 STATS LOCAL VITERBI -7.6461 0.71932
2804 STATS LOCAL FORWARD -4.1544 0.71932
2805 HMM A C G T
2806 m->m m->i m->d i->m i->i d->m d->d
2807 COMPO 1.31721 1.62507 1.26310 1.37656
2808 1.38629 1.38629 1.38629 1.38629
2809 0.03586 4.03910 4.03910 1.46634 0.26236 0.00000 *
2810 1 0.13568 3.42858 2.83322 3.33486 1 - -
2811 1.38629 1.38629 1.38629 1.38629
2812 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547
2813 2 2.98094 3.63655 0.11196 3.54635 2 - -
2814 1.38629 1.38629 1.38629 1.38629
2815 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547
2816 3 3.13765 2.62630 3.18392 0.17097 3 - -
2817 1.38629 1.38629 1.38629 1.38629
2818 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547
2819 4 3.48870 0.12377 3.53577 2.86929 4 - -
2820 1.38629 1.38629 1.38629 1.38629
2821 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547
2822 5 2.98094 3.63655 0.11196 3.54635 5 - -
2823 1.38629 1.38629 1.38629 1.38629
2824 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547
2825 6 3.13765 2.62630 3.18392 0.17097 6 - -
2826 1.38629 1.38629 1.38629 1.38629
2827 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547
2828 7 0.13568 3.42858 2.83322 3.33486 7 - -
2829 1.38629 1.38629 1.38629 1.38629
2830 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547
2831 8 0.13568 3.42858 2.83322 3.33486 8 - -
2832 1.38629 1.38629 1.38629 1.38629
2833 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547
2834 9 3.48870 0.12377 3.53577 2.86929 9 - -
2835 1.38629 1.38629 1.38629 1.38629
2836 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547
2837 10 0.13568 3.42858 2.83322 3.33486 10 - -
2838 1.38629 1.38629 1.38629 1.38629
2839 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547
2840 11 0.13568 3.42858 2.83322 3.33486 11 - -
2841 1.38629 1.38629 1.38629 1.38629
2842 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547
2843 12 2.98094 3.63655 0.11196 3.54635 12 - -
2844 1.38629 1.38629 1.38629 1.38629
2845 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547
2846 13 2.98094 3.63655 0.11196 3.54635 13 - -
2847 1.38629 1.38629 1.38629 1.38629
2848 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547
2849 14 3.13765 2.62630 3.18392 0.17097 14 - -
2850 1.38629 1.38629 1.38629 1.38629
2851 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547
2852 15 0.13568 3.42858 2.83322 3.33486 15 - -
2853 1.38629 1.38629 1.38629 1.38629
2854 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547
2855 16 3.13765 2.62630 3.18392 0.17097 16 - -
2856 1.38629 1.38629 1.38629 1.38629
2857 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547
2858 17 3.48870 0.12377 3.53577 2.86929 17 - -
2859 1.38629 1.38629 1.38629 1.38629
2860 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547
2861 18 2.78716 0.27620 2.35451 2.46742 18 - -
2862 1.38629 1.38629 1.38629 1.38629
2863 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547
2864 19 2.98094 3.63655 0.11196 3.54635 19 - -
2865 1.38629 1.38629 1.38629 1.38629
2866 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547
2867 20 3.13765 2.62630 3.18392 0.17097 20 - -
2868 1.38629 1.38629 1.38629 1.38629
2869 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547
2870 21 0.13568 3.42858 2.83322 3.33486 21 - -
2871 1.38629 1.38629 1.38629 1.38629
2872 0.32896 4.03910 1.33668 1.46634 0.26236 1.09861 0.40547
2873 22 2.56939 3.07022 0.19408 2.92959 22 - -
2874 1.38629 1.38629 1.38629 1.38629
2875 0.04779 3.75793 3.75793 1.46634 0.26236 0.12583 2.13510
2876 23 2.98094 3.63655 0.11196 3.54635 23 - -
2877 1.38629 1.38629 1.38629 1.38629
2878 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547
2879 24 3.13765 2.62630 3.18392 0.17097 24 - -
2880 1.38629 1.38629 1.38629 1.38629
2881 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547
2882 25 2.98094 3.63655 0.11196 3.54635 25 - -
2883 1.38629 1.38629 1.38629 1.38629
2884 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547
2885 26 0.13568 3.42858 2.83322 3.33486 26 - -
2886 1.38629 1.38629 1.38629 1.38629
2887 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547
2888 27 0.13568 3.42858 2.83322 3.33486 27 - -
2889 1.38629 1.38629 1.38629 1.38629
2890 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547
2891 28 3.48870 0.12377 3.53577 2.86929 28 - -
2892 1.38629 1.38629 1.38629 1.38629
2893 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547
2894 29 3.48870 0.12377 3.53577 2.86929 29 - -
2895 1.38629 1.38629 1.38629 1.38629
2896 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547
2897 30 3.13765 2.62630 3.18392 0.17097 30 - -
2898 1.38629 1.38629 1.38629 1.38629
2899 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547
2900 31 2.98094 3.63655 0.11196 3.54635 31 - -
2901 1.38629 1.38629 1.38629 1.38629
2902 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547
2903 32 3.48870 0.12377 3.53577 2.86929 32 - -
2904 1.38629 1.38629 1.38629 1.38629
2905 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547
2906 33 2.62697 2.44597 0.24485 2.84327 33 - -
2907 1.38629 1.38629 1.38629 1.38629
2908 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547
2909 34 2.98094 3.63655 0.11196 3.54635 34 - -
2910 1.38629 1.38629 1.38629 1.38629
2911 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547
2912 35 0.13568 3.42858 2.83322 3.33486 35 - -
2913 1.38629 1.38629 1.38629 1.38629
2914 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547
2915 36 3.13765 2.62630 3.18392 0.17097 36 - -
2916 1.38629 1.38629 1.38629 1.38629
2917 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547
2918 37 2.98094 3.63655 0.11196 3.54635 37 - -
2919 1.38629 1.38629 1.38629 1.38629
2920 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547
2921 38 2.98094 3.63655 0.11196 3.54635 38 - -
2922 1.38629 1.38629 1.38629 1.38629
2923 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547
2924 39 0.13568 3.42858 2.83322 3.33486 39 - -
2925 1.38629 1.38629 1.38629 1.38629
2926 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547
2927 40 3.13765 2.62630 3.18392 0.17097 40 - -
2928 1.38629 1.38629 1.38629 1.38629
2929 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547
2930 41 3.48870 0.12377 3.53577 2.86929 41 - -
2931 1.38629 1.38629 1.38629 1.38629
2932 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547
2933 42 0.13568 3.42858 2.83322 3.33486 42 - -
2934 1.38629 1.38629 1.38629 1.38629
2935 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547
2936 43 3.13765 2.62630 3.18392 0.17097 43 - -
2937 1.38629 1.38629 1.38629 1.38629
2938 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547
2939 44 3.13765 2.62630 3.18392 0.17097 44 - -
2940 1.38629 1.38629 1.38629 1.38629
2941 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547
2942 45 2.10018 2.39300 2.66436 0.33328 45 - -
2943 1.38629 1.38629 1.38629 1.38629
2944 0.01809 4.02133 * 1.46634 0.26236 0.00000 *
2945 //
2946 HMMER3/b [3.0 | March 2010]
2947 NAME 1_SSU_Amoebozoa_1_SSU_end_onec_long
2948 LENG 45
2949 ALPH DNA
2950 RF no
2951 CS no
2952 MAP yes
2953 DATE Fri Jan 20 22:26:19 2012
2954 NSEQ 13
2955 EFFN 3.240479
2956 CKSUM 1661502292
2957 STATS LOCAL MSV -8.0638 0.71932
2958 STATS LOCAL VITERBI -7.7447 0.71932
2959 STATS LOCAL FORWARD -4.3884 0.71932
2960 HMM A C G T
2961 m->m m->i m->d i->m i->i d->m d->d
2962 COMPO 1.34170 1.54513 1.18912 1.51038
2963 1.38629 1.38629 1.38629 1.38629
2964 0.03745 3.99645 3.99645 1.46634 0.26236 0.00000 *
2965 1 0.14547 3.35358 2.78456 3.25273 1 - -
2966 1.38629 1.38629 1.38629 1.38629
2967 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547
2968 2 2.92882 3.56061 0.12017 3.46248 2 - -
2969 1.38629 1.38629 1.38629 1.38629
2970 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547
2971 3 3.06176 2.57805 3.11093 0.18307 3 - -
2972 1.38629 1.38629 1.38629 1.38629
2973 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547
2974 4 3.40234 0.13394 3.45309 2.80654 4 - -
2975 1.38629 1.38629 1.38629 1.38629
2976 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547
2977 5 2.92882 3.56061 0.12017 3.46248 5 - -
2978 1.38629 1.38629 1.38629 1.38629
2979 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547
2980 6 3.06176 2.57805 3.11093 0.18307 6 - -
2981 1.38629 1.38629 1.38629 1.38629
2982 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547
2983 7 0.14547 3.35358 2.78456 3.25273 7 - -
2984 1.38629 1.38629 1.38629 1.38629
2985 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547
2986 8 0.14547 3.35358 2.78456 3.25273 8 - -
2987 1.38629 1.38629 1.38629 1.38629
2988 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547
2989 9 3.40234 0.13394 3.45309 2.80654 9 - -
2990 1.38629 1.38629 1.38629 1.38629
2991 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547
2992 10 0.14547 3.35358 2.78456 3.25273 10 - -
2993 1.38629 1.38629 1.38629 1.38629
2994 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547
2995 11 0.14547 3.35358 2.78456 3.25273 11 - -
2996 1.38629 1.38629 1.38629 1.38629
2997 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547
2998 12 2.92882 3.56061 0.12017 3.46248 12 - -
2999 1.38629 1.38629 1.38629 1.38629
3000 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547
3001 13 2.92882 3.56061 0.12017 3.46248 13 - -
3002 1.38629 1.38629 1.38629 1.38629
3003 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547
3004 14 3.06176 2.57805 3.11093 0.18307 14 - -
3005 1.38629 1.38629 1.38629 1.38629
3006 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547
3007 15 3.40234 0.13394 3.45309 2.80654 15 - -
3008 1.38629 1.38629 1.38629 1.38629
3009 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547
3010 16 3.06176 2.57805 3.11093 0.18307 16 - -
3011 1.38629 1.38629 1.38629 1.38629
3012 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547
3013 17 3.40234 0.13394 3.45309 2.80654 17 - -
3014 1.38629 1.38629 1.38629 1.38629
3015 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547
3016 18 3.40234 0.13394 3.45309 2.80654 18 - -
3017 1.38629 1.38629 1.38629 1.38629
3018 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547
3019 19 2.92882 3.56061 0.12017 3.46248 19 - -
3020 1.38629 1.38629 1.38629 1.38629
3021 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547
3022 20 3.06176 2.57805 3.11093 0.18307 20 - -
3023 1.38629 1.38629 1.38629 1.38629
3024 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547
3025 21 0.14547 3.35358 2.78456 3.25273 21 - -
3026 1.38629 1.38629 1.38629 1.38629
3027 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547
3028 22 2.92882 3.56061 0.12017 3.46248 22 - -
3029 1.38629 1.38629 1.38629 1.38629
3030 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547
3031 23 2.92882 3.56061 0.12017 3.46248 23 - -
3032 1.38629 1.38629 1.38629 1.38629
3033 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547
3034 24 3.06176 2.57805 3.11093 0.18307 24 - -
3035 1.38629 1.38629 1.38629 1.38629
3036 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547
3037 25 2.92882 3.56061 0.12017 3.46248 25 - -
3038 1.38629 1.38629 1.38629 1.38629
3039 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547
3040 26 0.14547 3.35358 2.78456 3.25273 26 - -
3041 1.38629 1.38629 1.38629 1.38629
3042 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547
3043 27 0.14547 3.35358 2.78456 3.25273 27 - -
3044 1.38629 1.38629 1.38629 1.38629
3045 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547
3046 28 3.40234 0.13394 3.45309 2.80654 28 - -
3047 1.38629 1.38629 1.38629 1.38629
3048 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547
3049 29 3.40234 0.13394 3.45309 2.80654 29 - -
3050 1.38629 1.38629 1.38629 1.38629
3051 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547
3052 30 3.06176 2.57805 3.11093 0.18307 30 - -
3053 1.38629 1.38629 1.38629 1.38629
3054 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547
3055 31 2.92882 3.56061 0.12017 3.46248 31 - -
3056 1.38629 1.38629 1.38629 1.38629
3057 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547
3058 32 3.40234 0.13394 3.45309 2.80654 32 - -
3059 1.38629 1.38629 1.38629 1.38629
3060 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547
3061 33 2.92882 3.56061 0.12017 3.46248 33 - -
3062 1.38629 1.38629 1.38629 1.38629
3063 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547
3064 34 2.92882 3.56061 0.12017 3.46248 34 - -
3065 1.38629 1.38629 1.38629 1.38629
3066 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547
3067 35 0.14547 3.35358 2.78456 3.25273 35 - -
3068 1.38629 1.38629 1.38629 1.38629
3069 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547
3070 36 2.92882 3.56061 0.12017 3.46248 36 - -
3071 1.38629 1.38629 1.38629 1.38629
3072 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547
3073 37 2.92882 3.56061 0.12017 3.46248 37 - -
3074 1.38629 1.38629 1.38629 1.38629
3075 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547
3076 38 2.92882 3.56061 0.12017 3.46248 38 - -
3077 1.38629 1.38629 1.38629 1.38629
3078 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547
3079 39 0.14547 3.35358 2.78456 3.25273 39 - -
3080 1.38629 1.38629 1.38629 1.38629
3081 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547
3082 40 3.06176 2.57805 3.11093 0.18307 40 - -
3083 1.38629 1.38629 1.38629 1.38629
3084 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547
3085 41 3.40234 0.13394 3.45309 2.80654 41 - -
3086 1.38629 1.38629 1.38629 1.38629
3087 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547
3088 42 0.14547 3.35358 2.78456 3.25273 42 - -
3089 1.38629 1.38629 1.38629 1.38629
3090 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547
3091 43 3.06176 2.57805 3.11093 0.18307 43 - -
3092 1.38629 1.38629 1.38629 1.38629
3093 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547
3094 44 3.06176 2.57805 3.11093 0.18307 44 - -
3095 1.38629 1.38629 1.38629 1.38629
3096 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547
3097 45 0.26665 2.85378 2.54466 2.32346 45 - -
3098 1.38629 1.38629 1.38629 1.38629
3099 0.01890 3.97790 * 1.46634 0.26236 0.00000 *
3100 //
3101 HMMER3/b [3.0 | March 2010]
3102 NAME 1_SSU_Amoebozoa_1_SSU_end_oned_long
3103 LENG 45
3104 ALPH DNA
3105 RF no
3106 CS no
3107 MAP yes
3108 DATE Fri Jan 20 22:26:33 2012
3109 NSEQ 14
3110 EFFN 3.305176
3111 CKSUM 2249141990
3112 STATS LOCAL MSV -8.0858 0.71933
3113 STATS LOCAL VITERBI -7.7838 0.71933
3114 STATS LOCAL FORWARD -4.1454 0.71933
3115 HMM A C G T
3116 m->m m->i m->d i->m i->i d->m d->d
3117 COMPO 1.27019 1.70539 1.30694 1.32098
3118 1.38629 1.38629 1.38629 1.38629
3119 0.03701 4.00827 4.00827 1.46634 0.26236 0.00000 *
3120 1 0.14264 3.37464 2.79827 3.27577 1 - -
3121 1.38629 1.38629 1.38629 1.38629
3122 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547
3123 2 2.94360 3.58205 0.11779 3.48613 2 - -
3124 1.38629 1.38629 1.38629 1.38629
3125 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547
3126 3 3.08294 2.59153 3.13131 0.17959 3 - -
3127 1.38629 1.38629 1.38629 1.38629
3128 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547
3129 4 3.42663 0.13098 3.47636 2.82428 4 - -
3130 1.38629 1.38629 1.38629 1.38629
3131 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547
3132 5 2.94360 3.58205 0.11779 3.48613 5 - -
3133 1.38629 1.38629 1.38629 1.38629
3134 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547
3135 6 3.08294 2.59153 3.13131 0.17959 6 - -
3136 1.38629 1.38629 1.38629 1.38629
3137 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547
3138 7 0.14264 3.37464 2.79827 3.27577 7 - -
3139 1.38629 1.38629 1.38629 1.38629
3140 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547
3141 8 0.14264 3.37464 2.79827 3.27577 8 - -
3142 1.38629 1.38629 1.38629 1.38629
3143 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547
3144 9 3.42663 0.13098 3.47636 2.82428 9 - -
3145 1.38629 1.38629 1.38629 1.38629
3146 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547
3147 10 0.14264 3.37464 2.79827 3.27577 10 - -
3148 1.38629 1.38629 1.38629 1.38629
3149 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547
3150 11 0.14264 3.37464 2.79827 3.27577 11 - -
3151 1.38629 1.38629 1.38629 1.38629
3152 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547
3153 12 2.94360 3.58205 0.11779 3.48613 12 - -
3154 1.38629 1.38629 1.38629 1.38629
3155 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547
3156 13 2.94360 3.58205 0.11779 3.48613 13 - -
3157 1.38629 1.38629 1.38629 1.38629
3158 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547
3159 14 3.08294 2.59153 3.13131 0.17959 14 - -
3160 1.38629 1.38629 1.38629 1.38629
3161 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547
3162 15 0.14264 3.37464 2.79827 3.27577 15 - -
3163 1.38629 1.38629 1.38629 1.38629
3164 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547
3165 16 0.14264 3.37464 2.79827 3.27577 16 - -
3166 1.38629 1.38629 1.38629 1.38629
3167 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547
3168 17 2.89328 2.16089 2.94852 0.25236 17 - -
3169 1.38629 1.38629 1.38629 1.38629
3170 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547
3171 18 3.42663 0.13098 3.47636 2.82428 18 - -
3172 1.38629 1.38629 1.38629 1.38629
3173 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547
3174 19 2.94360 3.58205 0.11779 3.48613 19 - -
3175 1.38629 1.38629 1.38629 1.38629
3176 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547
3177 20 3.08294 2.59153 3.13131 0.17959 20 - -
3178 1.38629 1.38629 1.38629 1.38629
3179 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547
3180 21 0.14264 3.37464 2.79827 3.27577 21 - -
3181 1.38629 1.38629 1.38629 1.38629
3182 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547
3183 22 2.94360 3.58205 0.11779 3.48613 22 - -
3184 1.38629 1.38629 1.38629 1.38629
3185 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547
3186 23 2.94360 3.58205 0.11779 3.48613 23 - -
3187 1.38629 1.38629 1.38629 1.38629
3188 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547
3189 24 3.08294 2.59153 3.13131 0.17959 24 - -
3190 1.38629 1.38629 1.38629 1.38629
3191 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547
3192 25 2.94360 3.58205 0.11779 3.48613 25 - -
3193 1.38629 1.38629 1.38629 1.38629
3194 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547
3195 26 0.14264 3.37464 2.79827 3.27577 26 - -
3196 1.38629 1.38629 1.38629 1.38629
3197 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547
3198 27 0.14264 3.37464 2.79827 3.27577 27 - -
3199 1.38629 1.38629 1.38629 1.38629
3200 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547
3201 28 3.42663 0.13098 3.47636 2.82428 28 - -
3202 1.38629 1.38629 1.38629 1.38629
3203 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547
3204 29 3.42663 0.13098 3.47636 2.82428 29 - -
3205 1.38629 1.38629 1.38629 1.38629
3206 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547
3207 30 3.08294 2.59153 3.13131 0.17959 30 - -
3208 1.38629 1.38629 1.38629 1.38629
3209 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547
3210 31 2.94360 3.58205 0.11779 3.48613 31 - -
3211 1.38629 1.38629 1.38629 1.38629
3212 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547
3213 32 3.42663 0.13098 3.47636 2.82428 32 - -
3214 1.38629 1.38629 1.38629 1.38629
3215 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547
3216 33 2.94360 3.58205 0.11779 3.48613 33 - -
3217 1.38629 1.38629 1.38629 1.38629
3218 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547
3219 34 3.08294 2.59153 3.13131 0.17959 34 - -
3220 1.38629 1.38629 1.38629 1.38629
3221 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547
3222 35 3.08294 2.59153 3.13131 0.17959 35 - -
3223 1.38629 1.38629 1.38629 1.38629
3224 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547
3225 36 3.08294 2.59153 3.13131 0.17959 36 - -
3226 1.38629 1.38629 1.38629 1.38629
3227 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547
3228 37 2.94360 3.58205 0.11779 3.48613 37 - -
3229 1.38629 1.38629 1.38629 1.38629
3230 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547
3231 38 2.94360 3.58205 0.11779 3.48613 38 - -
3232 1.38629 1.38629 1.38629 1.38629
3233 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547
3234 39 0.14264 3.37464 2.79827 3.27577 39 - -
3235 1.38629 1.38629 1.38629 1.38629
3236 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547
3237 40 3.08294 2.59153 3.13131 0.17959 40 - -
3238 1.38629 1.38629 1.38629 1.38629
3239 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547
3240 41 3.42663 0.13098 3.47636 2.82428 41 - -
3241 1.38629 1.38629 1.38629 1.38629
3242 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547
3243 42 0.14264 3.37464 2.79827 3.27577 42 - -
3244 1.38629 1.38629 1.38629 1.38629
3245 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547
3246 43 3.08294 2.59153 3.13131 0.17959 43 - -
3247 1.38629 1.38629 1.38629 1.38629
3248 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547
3249 44 3.08294 2.59153 3.13131 0.17959 44 - -
3250 1.38629 1.38629 1.38629 1.38629
3251 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547
3252 45 0.14264 3.37464 2.79827 3.27577 45 - -
3253 1.38629 1.38629 1.38629 1.38629
3254 0.01867 3.98994 * 1.46634 0.26236 0.00000 *
3255 //
3256 HMMER3/b [3.0 | March 2010]
3257 NAME 1_SSU_Amoebozoa_1_SSU_end_threea_long
3258 LENG 45
3259 ALPH DNA
3260 RF no
3261 CS no
3262 MAP yes
3263 DATE Fri Jan 20 22:27:31 2012
3264 NSEQ 16
3265 EFFN 3.175781
3266 CKSUM 572948826
3267 STATS LOCAL MSV -8.0370 0.71932
3268 STATS LOCAL VITERBI -7.7288 0.71932
3269 STATS LOCAL FORWARD -4.0261 0.71932
3270 HMM A C G T
3271 m->m m->i m->d i->m i->i d->m d->d
3272 COMPO 1.15962 1.55332 1.24723 1.67370
3273 1.38629 1.38629 1.38629 1.38629
3274 0.03791 3.98449 3.98449 1.46634 0.26236 0.00000 *
3275 1 0.14843 3.33206 2.77050 3.22920 1 - -
3276 1.38629 1.38629 1.38629 1.38629
3277 0.07696 3.98449 2.89186 1.46634 0.26236 1.09861 0.40547
3278 2 2.86397 3.46759 0.13121 3.36018 2 - -
3279 1.38629 1.38629 1.38629 1.38629
3280 0.03939 3.94692 3.94692 1.46634 0.26236 0.51322 0.91271
3281 3 3.04021 2.56430 3.09020 0.18668 3 - -
3282 1.38629 1.38629 1.38629 1.38629
3283 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
3284 4 3.37748 0.13704 3.42926 2.78832 4 - -
3285 1.38629 1.38629 1.38629 1.38629
3286 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
3287 5 2.91360 3.53861 0.12268 3.43825 5 - -
3288 1.38629 1.38629 1.38629 1.38629
3289 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
3290 6 3.04021 2.56430 3.09020 0.18668 6 - -
3291 1.38629 1.38629 1.38629 1.38629
3292 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
3293 7 0.14843 3.33206 2.77050 3.22920 7 - -
3294 1.38629 1.38629 1.38629 1.38629
3295 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
3296 8 0.14843 3.33206 2.77050 3.22920 8 - -
3297 1.38629 1.38629 1.38629 1.38629
3298 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
3299 9 3.37748 0.13704 3.42926 2.78832 9 - -
3300 1.38629 1.38629 1.38629 1.38629
3301 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
3302 10 0.14843 3.33206 2.77050 3.22920 10 - -
3303 1.38629 1.38629 1.38629 1.38629
3304 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
3305 11 0.14843 3.33206 2.77050 3.22920 11 - -
3306 1.38629 1.38629 1.38629 1.38629
3307 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
3308 12 2.91360 3.53861 0.12268 3.43825 12 - -
3309 1.38629 1.38629 1.38629 1.38629
3310 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
3311 13 2.91360 3.53861 0.12268 3.43825 13 - -
3312 1.38629 1.38629 1.38629 1.38629
3313 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
3314 14 3.04021 2.56430 3.09020 0.18668 14 - -
3315 1.38629 1.38629 1.38629 1.38629
3316 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
3317 15 0.14843 3.33206 2.77050 3.22920 15 - -
3318 1.38629 1.38629 1.38629 1.38629
3319 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
3320 16 3.04021 2.56430 3.09020 0.18668 16 - -
3321 1.38629 1.38629 1.38629 1.38629
3322 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
3323 17 3.37748 0.13704 3.42926 2.78832 17 - -
3324 1.38629 1.38629 1.38629 1.38629
3325 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
3326 18 3.37748 0.13704 3.42926 2.78832 18 - -
3327 1.38629 1.38629 1.38629 1.38629
3328 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
3329 19 2.91360 3.53861 0.12268 3.43825 19 - -
3330 1.38629 1.38629 1.38629 1.38629
3331 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
3332 20 3.04021 2.56430 3.09020 0.18668 20 - -
3333 1.38629 1.38629 1.38629 1.38629
3334 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
3335 21 0.14843 3.33206 2.77050 3.22920 21 - -
3336 1.38629 1.38629 1.38629 1.38629
3337 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
3338 22 2.91360 3.53861 0.12268 3.43825 22 - -
3339 1.38629 1.38629 1.38629 1.38629
3340 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
3341 23 2.91360 3.53861 0.12268 3.43825 23 - -
3342 1.38629 1.38629 1.38629 1.38629
3343 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
3344 24 3.04021 2.56430 3.09020 0.18668 24 - -
3345 1.38629 1.38629 1.38629 1.38629
3346 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
3347 25 2.91360 3.53861 0.12268 3.43825 25 - -
3348 1.38629 1.38629 1.38629 1.38629
3349 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
3350 26 0.14843 3.33206 2.77050 3.22920 26 - -
3351 1.38629 1.38629 1.38629 1.38629
3352 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
3353 27 0.14843 3.33206 2.77050 3.22920 27 - -
3354 1.38629 1.38629 1.38629 1.38629
3355 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
3356 28 3.37748 0.13704 3.42926 2.78832 28 - -
3357 1.38629 1.38629 1.38629 1.38629
3358 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
3359 29 3.37748 0.13704 3.42926 2.78832 29 - -
3360 1.38629 1.38629 1.38629 1.38629
3361 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
3362 30 3.04021 2.56430 3.09020 0.18668 30 - -
3363 1.38629 1.38629 1.38629 1.38629
3364 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
3365 31 2.91360 3.53861 0.12268 3.43825 31 - -
3366 1.38629 1.38629 1.38629 1.38629
3367 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
3368 32 3.37748 0.13704 3.42926 2.78832 32 - -
3369 1.38629 1.38629 1.38629 1.38629
3370 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
3371 33 0.14843 3.33206 2.77050 3.22920 33 - -
3372 1.38629 1.38629 1.38629 1.38629
3373 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
3374 34 2.91360 3.53861 0.12268 3.43825 34 - -
3375 1.38629 1.38629 1.38629 1.38629
3376 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
3377 35 0.14843 3.33206 2.77050 3.22920 35 - -
3378 1.38629 1.38629 1.38629 1.38629
3379 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
3380 36 0.14843 3.33206 2.77050 3.22920 36 - -
3381 1.38629 1.38629 1.38629 1.38629
3382 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
3383 37 2.91360 3.53861 0.12268 3.43825 37 - -
3384 1.38629 1.38629 1.38629 1.38629
3385 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
3386 38 2.91360 3.53861 0.12268 3.43825 38 - -
3387 1.38629 1.38629 1.38629 1.38629
3388 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
3389 39 0.14843 3.33206 2.77050 3.22920 39 - -
3390 1.38629 1.38629 1.38629 1.38629
3391 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
3392 40 3.04021 2.56430 3.09020 0.18668 40 - -
3393 1.38629 1.38629 1.38629 1.38629
3394 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
3395 41 3.37748 0.13704 3.42926 2.78832 41 - -
3396 1.38629 1.38629 1.38629 1.38629
3397 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
3398 42 0.14843 3.33206 2.77050 3.22920 42 - -
3399 1.38629 1.38629 1.38629 1.38629
3400 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
3401 43 0.14843 3.33206 2.77050 3.22920 43 - -
3402 1.38629 1.38629 1.38629 1.38629
3403 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
3404 44 2.91360 3.53861 0.12268 3.43825 44 - -
3405 1.38629 1.38629 1.38629 1.38629
3406 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547
3407 45 3.37748 0.13704 3.42926 2.78832 45 - -
3408 1.38629 1.38629 1.38629 1.38629
3409 0.01914 3.96571 * 1.46634 0.26236 0.00000 *
3410 //
3411 HMMER3/b [3.0 | March 2010]
3412 NAME 1_SSU_Amoebozoa_1_SSU_end_threeb_long
3413 LENG 45
3414 ALPH DNA
3415 RF no
3416 CS no
3417 MAP yes
3418 DATE Fri Jan 20 22:27:37 2012
3419 NSEQ 3
3420 EFFN 3.000000
3421 CKSUM 479671279
3422 STATS LOCAL MSV -7.9995 0.72030
3423 STATS LOCAL VITERBI -7.7571 0.72030
3424 STATS LOCAL FORWARD -4.0868 0.72030
3425 HMM A C G T
3426 m->m m->i m->d i->m i->i d->m d->d
3427 COMPO 1.33393 1.61825 1.24860 1.38068
3428 1.38629 1.38629 1.38629 1.38629
3429 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 *
3430 1 0.15719 3.27118 2.73043 3.16274 1 - -
3431 1.38629 1.38629 1.38629 1.38629
3432 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3433 2 2.86982 3.47591 0.13017 3.36931 2 - -
3434 1.38629 1.38629 1.38629 1.38629
3435 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3436 3 2.97980 2.52563 3.03204 0.19727 3 - -
3437 1.38629 1.38629 1.38629 1.38629
3438 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3439 4 3.30705 0.14631 3.36166 2.73626 4 - -
3440 1.38629 1.38629 1.38629 1.38629
3441 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3442 5 2.86982 3.47591 0.13017 3.36931 5 - -
3443 1.38629 1.38629 1.38629 1.38629
3444 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3445 6 2.97980 2.52563 3.03204 0.19727 6 - -
3446 1.38629 1.38629 1.38629 1.38629
3447 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3448 7 0.15719 3.27118 2.73043 3.16274 7 - -
3449 1.38629 1.38629 1.38629 1.38629
3450 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3451 8 0.15719 3.27118 2.73043 3.16274 8 - -
3452 1.38629 1.38629 1.38629 1.38629
3453 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3454 9 3.30705 0.14631 3.36166 2.73626 9 - -
3455 1.38629 1.38629 1.38629 1.38629
3456 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3457 10 0.15719 3.27118 2.73043 3.16274 10 - -
3458 1.38629 1.38629 1.38629 1.38629
3459 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3460 11 0.15719 3.27118 2.73043 3.16274 11 - -
3461 1.38629 1.38629 1.38629 1.38629
3462 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3463 12 2.86982 3.47591 0.13017 3.36931 12 - -
3464 1.38629 1.38629 1.38629 1.38629
3465 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3466 13 2.86982 3.47591 0.13017 3.36931 13 - -
3467 1.38629 1.38629 1.38629 1.38629
3468 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3469 14 2.97980 2.52563 3.03204 0.19727 14 - -
3470 1.38629 1.38629 1.38629 1.38629
3471 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3472 15 0.15719 3.27118 2.73043 3.16274 15 - -
3473 1.38629 1.38629 1.38629 1.38629
3474 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3475 16 2.97980 2.52563 3.03204 0.19727 16 - -
3476 1.38629 1.38629 1.38629 1.38629
3477 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3478 17 3.30705 0.14631 3.36166 2.73626 17 - -
3479 1.38629 1.38629 1.38629 1.38629
3480 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3481 18 3.30705 0.14631 3.36166 2.73626 18 - -
3482 1.38629 1.38629 1.38629 1.38629
3483 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3484 19 2.86982 3.47591 0.13017 3.36931 19 - -
3485 1.38629 1.38629 1.38629 1.38629
3486 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3487 20 2.97980 2.52563 3.03204 0.19727 20 - -
3488 1.38629 1.38629 1.38629 1.38629
3489 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3490 21 0.15719 3.27118 2.73043 3.16274 21 - -
3491 1.38629 1.38629 1.38629 1.38629
3492 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3493 22 2.86982 3.47591 0.13017 3.36931 22 - -
3494 1.38629 1.38629 1.38629 1.38629
3495 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3496 23 2.86982 3.47591 0.13017 3.36931 23 - -
3497 1.38629 1.38629 1.38629 1.38629
3498 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3499 24 2.97980 2.52563 3.03204 0.19727 24 - -
3500 1.38629 1.38629 1.38629 1.38629
3501 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3502 25 2.86982 3.47591 0.13017 3.36931 25 - -
3503 1.38629 1.38629 1.38629 1.38629
3504 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3505 26 0.15719 3.27118 2.73043 3.16274 26 - -
3506 1.38629 1.38629 1.38629 1.38629
3507 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3508 27 0.15719 3.27118 2.73043 3.16274 27 - -
3509 1.38629 1.38629 1.38629 1.38629
3510 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3511 28 3.30705 0.14631 3.36166 2.73626 28 - -
3512 1.38629 1.38629 1.38629 1.38629
3513 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3514 29 3.30705 0.14631 3.36166 2.73626 29 - -
3515 1.38629 1.38629 1.38629 1.38629
3516 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3517 30 2.97980 2.52563 3.03204 0.19727 30 - -
3518 1.38629 1.38629 1.38629 1.38629
3519 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3520 31 2.86982 3.47591 0.13017 3.36931 31 - -
3521 1.38629 1.38629 1.38629 1.38629
3522 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3523 32 3.30705 0.14631 3.36166 2.73626 32 - -
3524 1.38629 1.38629 1.38629 1.38629
3525 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3526 33 2.86982 3.47591 0.13017 3.36931 33 - -
3527 1.38629 1.38629 1.38629 1.38629
3528 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3529 34 2.86982 3.47591 0.13017 3.36931 34 - -
3530 1.38629 1.38629 1.38629 1.38629
3531 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3532 35 0.15719 3.27118 2.73043 3.16274 35 - -
3533 1.38629 1.38629 1.38629 1.38629
3534 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3535 36 2.97980 2.52563 3.03204 0.19727 36 - -
3536 1.38629 1.38629 1.38629 1.38629
3537 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3538 37 2.86982 3.47591 0.13017 3.36931 37 - -
3539 1.38629 1.38629 1.38629 1.38629
3540 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3541 38 2.86982 3.47591 0.13017 3.36931 38 - -
3542 1.38629 1.38629 1.38629 1.38629
3543 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3544 39 0.15719 3.27118 2.73043 3.16274 39 - -
3545 1.38629 1.38629 1.38629 1.38629
3546 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3547 40 2.97980 2.52563 3.03204 0.19727 40 - -
3548 1.38629 1.38629 1.38629 1.38629
3549 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3550 41 3.30705 0.14631 3.36166 2.73626 41 - -
3551 1.38629 1.38629 1.38629 1.38629
3552 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3553 42 0.15719 3.27118 2.73043 3.16274 42 - -
3554 1.38629 1.38629 1.38629 1.38629
3555 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3556 43 2.97980 2.52563 3.03204 0.19727 43 - -
3557 1.38629 1.38629 1.38629 1.38629
3558 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3559 44 2.97980 2.52563 3.03204 0.19727 44 - -
3560 1.38629 1.38629 1.38629 1.38629
3561 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547
3562 45 2.97980 2.52563 3.03204 0.19727 45 - -
3563 1.38629 1.38629 1.38629 1.38629
3564 0.01980 3.93183 * 1.46634 0.26236 0.00000 *
3565 //
3566 HMMER3/b [3.0 | March 2010]
3567 NAME 1_SSU_Amoebozoa_1_SSU_end_threec_long
3568 LENG 45
3569 ALPH DNA
3570 RF no
3571 CS no
3572 MAP yes
3573 DATE Fri Jan 20 22:27:43 2012
3574 NSEQ 5
3575 EFFN 3.247070
3576 CKSUM 3545515269
3577 STATS LOCAL MSV -8.0553 0.71931
3578 STATS LOCAL VITERBI -7.6960 0.71931
3579 STATS LOCAL FORWARD -4.1589 0.71931
3580 HMM A C G T
3581 m->m m->i m->d i->m i->i d->m d->d
3582 COMPO 1.33344 1.62254 1.24775 1.37878
3583 1.38629 1.38629 1.38629 1.38629
3584 0.03741 3.99766 3.99766 1.46634 0.26236 0.00000 *
3585 1 0.14518 3.35575 2.78597 3.25510 1 - -
3586 1.38629 1.38629 1.38629 1.38629
3587 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547
3588 2 2.93035 3.56282 0.11992 3.46492 2 - -
3589 1.38629 1.38629 1.38629 1.38629
3590 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547
3591 3 3.06393 2.57943 3.11303 0.18271 3 - -
3592 1.38629 1.38629 1.38629 1.38629
3593 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547
3594 4 3.40484 0.13363 3.45549 2.80837 4 - -
3595 1.38629 1.38629 1.38629 1.38629
3596 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547
3597 5 2.93035 3.56282 0.11992 3.46492 5 - -
3598 1.38629 1.38629 1.38629 1.38629
3599 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547
3600 6 3.06393 2.57943 3.11303 0.18271 6 - -
3601 1.38629 1.38629 1.38629 1.38629
3602 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547
3603 7 0.14518 3.35575 2.78597 3.25510 7 - -
3604 1.38629 1.38629 1.38629 1.38629
3605 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547
3606 8 0.14518 3.35575 2.78597 3.25510 8 - -
3607 1.38629 1.38629 1.38629 1.38629
3608 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547
3609 9 3.40484 0.13363 3.45549 2.80837 9 - -
3610 1.38629 1.38629 1.38629 1.38629
3611 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547
3612 10 0.14518 3.35575 2.78597 3.25510 10 - -
3613 1.38629 1.38629 1.38629 1.38629
3614 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547
3615 11 0.14518 3.35575 2.78597 3.25510 11 - -
3616 1.38629 1.38629 1.38629 1.38629
3617 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547
3618 12 2.93035 3.56282 0.11992 3.46492 12 - -
3619 1.38629 1.38629 1.38629 1.38629
3620 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547
3621 13 2.93035 3.56282 0.11992 3.46492 13 - -
3622 1.38629 1.38629 1.38629 1.38629
3623 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547
3624 14 3.06393 2.57943 3.11303 0.18271 14 - -
3625 1.38629 1.38629 1.38629 1.38629
3626 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547
3627 15 0.14518 3.35575 2.78597 3.25510 15 - -
3628 1.38629 1.38629 1.38629 1.38629
3629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547
3630 16 3.06393 2.57943 3.11303 0.18271 16 - -
3631 1.38629 1.38629 1.38629 1.38629
3632 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547
3633 17 3.40484 0.13363 3.45549 2.80837 17 - -
3634 1.38629 1.38629 1.38629 1.38629
3635 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547
3636 18 3.40484 0.13363 3.45549 2.80837 18 - -
3637 1.38629 1.38629 1.38629 1.38629
3638 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547
3639 19 2.93035 3.56282 0.11992 3.46492 19 - -
3640 1.38629 1.38629 1.38629 1.38629
3641 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547
3642 20 3.06393 2.57943 3.11303 0.18271 20 - -
3643 1.38629 1.38629 1.38629 1.38629
3644 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547
3645 21 0.14518 3.35575 2.78597 3.25510 21 - -
3646 1.38629 1.38629 1.38629 1.38629
3647 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547
3648 22 2.93035 3.56282 0.11992 3.46492 22 - -
3649 1.38629 1.38629 1.38629 1.38629
3650 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547
3651 23 2.93035 3.56282 0.11992 3.46492 23 - -
3652 1.38629 1.38629 1.38629 1.38629
3653 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547
3654 24 3.06393 2.57943 3.11303 0.18271 24 - -
3655 1.38629 1.38629 1.38629 1.38629
3656 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547
3657 25 2.93035 3.56282 0.11992 3.46492 25 - -
3658 1.38629 1.38629 1.38629 1.38629
3659 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547
3660 26 0.14518 3.35575 2.78597 3.25510 26 - -
3661 1.38629 1.38629 1.38629 1.38629
3662 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547
3663 27 0.14518 3.35575 2.78597 3.25510 27 - -
3664 1.38629 1.38629 1.38629 1.38629
3665 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547
3666 28 3.40484 0.13363 3.45549 2.80837 28 - -
3667 1.38629 1.38629 1.38629 1.38629
3668 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547
3669 29 3.40484 0.13363 3.45549 2.80837 29 - -
3670 1.38629 1.38629 1.38629 1.38629
3671 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547
3672 30 3.06393 2.57943 3.11303 0.18271 30 - -
3673 1.38629 1.38629 1.38629 1.38629
3674 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547
3675 31 2.93035 3.56282 0.11992 3.46492 31 - -
3676 1.38629 1.38629 1.38629 1.38629
3677 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547
3678 32 3.40484 0.13363 3.45549 2.80837 32 - -
3679 1.38629 1.38629 1.38629 1.38629
3680 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547
3681 33 2.93035 3.56282 0.11992 3.46492 33 - -
3682 1.38629 1.38629 1.38629 1.38629
3683 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547
3684 34 2.93035 3.56282 0.11992 3.46492 34 - -
3685 1.38629 1.38629 1.38629 1.38629
3686 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547
3687 35 0.14518 3.35575 2.78597 3.25510 35 - -
3688 1.38629 1.38629 1.38629 1.38629
3689 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547
3690 36 3.06393 2.57943 3.11303 0.18271 36 - -
3691 1.38629 1.38629 1.38629 1.38629
3692 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547
3693 37 2.93035 3.56282 0.11992 3.46492 37 - -
3694 1.38629 1.38629 1.38629 1.38629
3695 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547
3696 38 2.93035 3.56282 0.11992 3.46492 38 - -
3697 1.38629 1.38629 1.38629 1.38629
3698 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547
3699 39 0.14518 3.35575 2.78597 3.25510 39 - -
3700 1.38629 1.38629 1.38629 1.38629
3701 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547
3702 40 3.06393 2.57943 3.11303 0.18271 40 - -
3703 1.38629 1.38629 1.38629 1.38629
3704 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547
3705 41 3.40484 0.13363 3.45549 2.80837 41 - -
3706 1.38629 1.38629 1.38629 1.38629
3707 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547
3708 42 0.14518 3.35575 2.78597 3.25510 42 - -
3709 1.38629 1.38629 1.38629 1.38629
3710 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547
3711 43 3.06393 2.57943 3.11303 0.18271 43 - -
3712 1.38629 1.38629 1.38629 1.38629
3713 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547
3714 44 3.06393 2.57943 3.11303 0.18271 44 - -
3715 1.38629 1.38629 1.38629 1.38629
3716 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547
3717 45 3.06393 2.57943 3.11303 0.18271 45 - -
3718 1.38629 1.38629 1.38629 1.38629
3719 0.01888 3.97913 * 1.46634 0.26236 0.00000 *
3720 //
3721 HMMER3/b [3.0 | March 2010]
3722 NAME 1_SSU_Amoebozoa_1_SSU_end_two_long
3723 LENG 45
3724 ALPH DNA
3725 RF no
3726 CS no
3727 MAP yes
3728 DATE Fri Jan 20 22:27:08 2012
3729 NSEQ 71
3730 EFFN 3.375793
3731 CKSUM 1469632365
3732 STATS LOCAL MSV -7.4121 0.71932
3733 STATS LOCAL VITERBI -7.6514 0.71932
3734 STATS LOCAL FORWARD -4.1516 0.71932
3735 HMM A C G T
3736 m->m m->i m->d i->m i->i d->m d->d
3737 COMPO 1.32611 1.62738 1.24904 1.38123
3738 1.38629 1.38629 1.38629 1.38629
3739 0.03653 4.02102 4.02102 1.46634 0.26236 0.00000 *
3740 1 0.13969 3.39712 2.81286 3.30038 1 - -
3741 1.38629 1.38629 1.38629 1.38629
3742 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547
3743 2 2.95925 3.60483 0.11531 3.51128 2 - -
3744 1.38629 1.38629 1.38629 1.38629
3745 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547
3746 3 3.10566 2.60598 3.15316 0.17595 3 - -
3747 1.38629 1.38629 1.38629 1.38629
3748 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547
3749 4 3.45252 0.12792 3.50115 2.84311 4 - -
3750 1.38629 1.38629 1.38629 1.38629
3751 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547
3752 5 2.95925 3.60483 0.11531 3.51128 5 - -
3753 1.38629 1.38629 1.38629 1.38629
3754 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547
3755 6 3.10566 2.60598 3.15316 0.17595 6 - -
3756 1.38629 1.38629 1.38629 1.38629
3757 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547
3758 7 0.13969 3.39712 2.81286 3.30038 7 - -
3759 1.38629 1.38629 1.38629 1.38629
3760 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547
3761 8 0.13969 3.39712 2.81286 3.30038 8 - -
3762 1.38629 1.38629 1.38629 1.38629
3763 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547
3764 9 3.45252 0.12792 3.50115 2.84311 9 - -
3765 1.38629 1.38629 1.38629 1.38629
3766 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547
3767 10 0.13969 3.39712 2.81286 3.30038 10 - -
3768 1.38629 1.38629 1.38629 1.38629
3769 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547
3770 11 0.13969 3.39712 2.81286 3.30038 11 - -
3771 1.38629 1.38629 1.38629 1.38629
3772 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547
3773 12 2.95925 3.60483 0.11531 3.51128 12 - -
3774 1.38629 1.38629 1.38629 1.38629
3775 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547
3776 13 2.95925 3.60483 0.11531 3.51128 13 - -
3777 1.38629 1.38629 1.38629 1.38629
3778 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547
3779 14 3.10566 2.60598 3.15316 0.17595 14 - -
3780 1.38629 1.38629 1.38629 1.38629
3781 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547
3782 15 0.13969 3.39712 2.81286 3.30038 15 - -
3783 1.38629 1.38629 1.38629 1.38629
3784 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547
3785 16 3.10566 2.60598 3.15316 0.17595 16 - -
3786 1.38629 1.38629 1.38629 1.38629
3787 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547
3788 17 3.45252 0.12792 3.50115 2.84311 17 - -
3789 1.38629 1.38629 1.38629 1.38629
3790 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547
3791 18 2.95186 0.22451 2.63110 2.56592 18 - -
3792 1.38629 1.38629 1.38629 1.38629
3793 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547
3794 19 2.95925 3.60483 0.11531 3.51128 19 - -
3795 1.38629 1.38629 1.38629 1.38629
3796 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547
3797 20 3.10566 2.60598 3.15316 0.17595 20 - -
3798 1.38629 1.38629 1.38629 1.38629
3799 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547
3800 21 0.13969 3.39712 2.81286 3.30038 21 - -
3801 1.38629 1.38629 1.38629 1.38629
3802 0.05378 4.02102 3.36902 1.46634 0.26236 1.09861 0.40547
3803 22 2.93878 3.57505 0.11856 3.47840 22 - -
3804 1.38629 1.38629 1.38629 1.38629
3805 0.03715 4.00439 4.00439 1.46634 0.26236 0.71393 0.67279
3806 23 2.95925 3.60483 0.11531 3.51128 23 - -
3807 1.38629 1.38629 1.38629 1.38629
3808 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547
3809 24 3.10566 2.60598 3.15316 0.17595 24 - -
3810 1.38629 1.38629 1.38629 1.38629
3811 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547
3812 25 2.95925 3.60483 0.11531 3.51128 25 - -
3813 1.38629 1.38629 1.38629 1.38629
3814 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547
3815 26 0.13969 3.39712 2.81286 3.30038 26 - -
3816 1.38629 1.38629 1.38629 1.38629
3817 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547
3818 27 0.13969 3.39712 2.81286 3.30038 27 - -
3819 1.38629 1.38629 1.38629 1.38629
3820 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547
3821 28 3.45252 0.12792 3.50115 2.84311 28 - -
3822 1.38629 1.38629 1.38629 1.38629
3823 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547
3824 29 3.45252 0.12792 3.50115 2.84311 29 - -
3825 1.38629 1.38629 1.38629 1.38629
3826 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547
3827 30 3.10566 2.60598 3.15316 0.17595 30 - -
3828 1.38629 1.38629 1.38629 1.38629
3829 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547
3830 31 2.95925 3.60483 0.11531 3.51128 31 - -
3831 1.38629 1.38629 1.38629 1.38629
3832 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547
3833 32 3.45252 0.12792 3.50115 2.84311 32 - -
3834 1.38629 1.38629 1.38629 1.38629
3835 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547
3836 33 2.71968 2.72902 0.19871 3.01523 33 - -
3837 1.38629 1.38629 1.38629 1.38629
3838 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547
3839 34 2.95925 3.60483 0.11531 3.51128 34 - -
3840 1.38629 1.38629 1.38629 1.38629
3841 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547
3842 35 0.13969 3.39712 2.81286 3.30038 35 - -
3843 1.38629 1.38629 1.38629 1.38629
3844 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547
3845 36 3.10566 2.60598 3.15316 0.17595 36 - -
3846 1.38629 1.38629 1.38629 1.38629
3847 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547
3848 37 2.95925 3.60483 0.11531 3.51128 37 - -
3849 1.38629 1.38629 1.38629 1.38629
3850 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547
3851 38 2.95925 3.60483 0.11531 3.51128 38 - -
3852 1.38629 1.38629 1.38629 1.38629
3853 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547
3854 39 0.13969 3.39712 2.81286 3.30038 39 - -
3855 1.38629 1.38629 1.38629 1.38629
3856 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547
3857 40 3.10566 2.60598 3.15316 0.17595 40 - -
3858 1.38629 1.38629 1.38629 1.38629
3859 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547
3860 41 3.45252 0.12792 3.50115 2.84311 41 - -
3861 1.38629 1.38629 1.38629 1.38629
3862 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547
3863 42 0.13969 3.39712 2.81286 3.30038 42 - -
3864 1.38629 1.38629 1.38629 1.38629
3865 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547
3866 43 3.10566 2.60598 3.15316 0.17595 43 - -
3867 1.38629 1.38629 1.38629 1.38629
3868 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547
3869 44 3.10566 2.60598 3.15316 0.17595 44 - -
3870 1.38629 1.38629 1.38629 1.38629
3871 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547
3872 45 2.33315 2.44141 2.77551 0.28282 45 - -
3873 1.38629 1.38629 1.38629 1.38629
3874 0.01843 4.00292 * 1.46634 0.26236 0.00000 *
3875 //