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HMMER3/b [3.0 | March 2010]
NAME  3_End_Amoebozoa_58S_end_four_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 23:03:49 2012
NSEQ  5
EFFN  3.198242
CKSUM 1352929219
STATS LOCAL MSV       -8.1195  0.71934
STATS LOCAL VITERBI   -7.8448  0.71934
STATS LOCAL FORWARD   -3.8579  0.71934
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   2.36165  1.09112  1.20867  1.30453
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  0.00000        *
      1   0.14739  3.33958  2.77542  3.23743      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
      2   3.38618  0.13595  3.43760  2.79470      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
      3   2.91894  3.54631  0.12180  3.44673      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
      4   3.04773  2.56910  3.09744  0.18541      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
      5   2.91894  3.54631  0.12180  3.44673      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
      6   3.38618  0.13595  3.43760  2.79470      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
      7   2.91894  3.54631  0.12180  3.44673      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
      8   2.91894  3.54631  0.12180  3.44673      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
      9   3.38618  0.13595  3.43760  2.79470      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     10   3.38618  0.13595  3.43760  2.79470     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     11   3.04773  2.56910  3.09744  0.18541     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     12   3.38618  0.13595  3.43760  2.79470     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     13   2.91894  3.54631  0.12180  3.44673     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     14   3.04773  2.56910  3.09744  0.18541     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     15   3.38618  0.13595  3.43760  2.79470     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     16   3.04773  2.56910  3.09744  0.18541     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     17   3.04773  2.56910  3.09744  0.18541     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     18   3.38618  0.13595  3.43760  2.79470     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     19   2.91894  3.54631  0.12180  3.44673     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     20   2.91894  3.54631  0.12180  3.44673     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     21   0.14739  3.33958  2.77542  3.23743     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     22   3.38618  0.13595  3.43760  2.79470     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     23   2.91894  3.54631  0.12180  3.44673     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     24   3.38618  0.13595  3.43760  2.79470     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     25   3.04773  2.56910  3.09744  0.18541     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     26   2.91894  3.54631  0.12180  3.44673     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     27   2.91894  3.54631  0.12180  3.44673     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     28   3.38618  0.13595  3.43760  2.79470     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     29   3.38618  0.13595  3.43760  2.79470     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     30   3.38618  0.13595  3.43760  2.79470     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     31   3.04773  2.56910  3.09744  0.18541     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     32   3.38618  0.13595  3.43760  2.79470     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     33   3.04773  2.56910  3.09744  0.18541     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     34   3.04773  2.56910  3.09744  0.18541     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     35   2.91894  3.54631  0.12180  3.44673     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     36   2.91894  3.54631  0.12180  3.44673     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     37   3.38618  0.13595  3.43760  2.79470     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     38   3.04773  2.56910  3.09744  0.18541     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     39   3.04773  2.56910  3.09744  0.18541     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     40   2.91894  3.54631  0.12180  3.44673     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     41   3.38618  0.13595  3.43760  2.79470     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     42   3.38618  0.13595  3.43760  2.79470     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     43   3.04773  2.56910  3.09744  0.18541     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     44   3.04773  2.56910  3.09744  0.18541     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03775  3.98866  3.98866  1.46634  0.26236  1.09861  0.40547
     45   2.91894  3.54631  0.12180  3.44673     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01905  3.96996        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Amoebozoa_58S_end_one_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 23:03:22 2012
NSEQ  2
EFFN  2.000000
CKSUM 2956303962
STATS LOCAL MSV       -7.6683  0.72805
STATS LOCAL VITERBI   -8.2257  0.72805
STATS LOCAL FORWARD   -3.2732  0.72805
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.92481  1.13424  1.33224  1.31474
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.81865  0.23582  2.88868  2.35662      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   0.23862  2.84929  2.43386  2.70756      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   0.23862  2.84929  2.43386  2.70756      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.57915  2.25909  2.64442  0.28946      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.53331  3.02441  0.20344  2.88069      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.53331  3.02441  0.20344  2.88069      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   2.53331  3.02441  0.20344  2.88069      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.81865  0.23582  2.88868  2.35662      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   2.57915  2.25909  2.64442  0.28946     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.57915  2.25909  2.64442  0.28946     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.53331  3.02441  0.20344  2.88069     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.57915  2.25909  2.64442  0.28946     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.81865  0.23582  2.88868  2.35662     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.81865  0.23582  2.88868  2.35662     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   2.57915  2.25909  2.64442  0.28946     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.81865  0.23582  2.88868  2.35662     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.53331  3.02441  0.20344  2.88069     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.53331  3.02441  0.20344  2.88069     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   0.23862  2.84929  2.43386  2.70756     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   2.81865  0.23582  2.88868  2.35662     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   0.23862  2.84929  2.43386  2.70756     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.81865  0.23582  2.88868  2.35662     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.57915  2.25909  2.64442  0.28946     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   2.53331  3.02441  0.20344  2.88069     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.53331  3.02441  0.20344  2.88069     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.81865  0.23582  2.88868  2.35662     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.81865  0.23582  2.88868  2.35662     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.81865  0.23582  2.88868  2.35662     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.81865  0.23582  2.88868  2.35662     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   2.81865  0.23582  2.88868  2.35662     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.57915  2.25909  2.64442  0.28946     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.57915  2.25909  2.64442  0.28946     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.53331  3.02441  0.20344  2.88069     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   2.53331  3.02441  0.20344  2.88069     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.57915  2.25909  2.64442  0.28946     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.57915  2.25909  2.64442  0.28946     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.57915  2.25909  2.64442  0.28946     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.53331  3.02441  0.20344  2.88069     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.81865  0.23582  2.88868  2.35662     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.57915  2.25909  2.64442  0.28946     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.57915  2.25909  2.64442  0.28946     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.53331  3.02441  0.20344  2.88069     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Amoebozoa_58S_end_three_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 23:03:40 2012
NSEQ  3
EFFN  3.000000
CKSUM 3482197706
STATS LOCAL MSV       -7.9368  0.72097
STATS LOCAL VITERBI   -7.9470  0.72097
STATS LOCAL FORWARD   -3.8220  0.72097
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   2.16502  1.08740  1.26141  1.32838
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   3.30705  0.14631  3.36166  2.73626      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   2.86982  3.47591  0.13017  3.36931      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   0.15719  3.27118  2.73043  3.16274      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   2.97980  2.52563  3.03204  0.19727      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.86982  3.47591  0.13017  3.36931      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   3.30705  0.14631  3.36166  2.73626      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   2.86982  3.47591  0.13017  3.36931      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   0.15719  3.27118  2.73043  3.16274      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   3.30705  0.14631  3.36166  2.73626      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   3.30705  0.14631  3.36166  2.73626     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   2.97980  2.52563  3.03204  0.19727     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.97980  2.52563  3.03204  0.19727     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   2.86982  3.47591  0.13017  3.36931     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   3.30705  0.14631  3.36166  2.73626     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   3.30705  0.14631  3.36166  2.73626     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   2.42796  0.63000  2.50086  1.21343     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   2.97980  2.52563  3.03204  0.19727     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   3.30705  0.14631  3.36166  2.73626     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   2.86982  3.47591  0.13017  3.36931     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.86982  3.47591  0.13017  3.36931     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   2.86982  3.47591  0.13017  3.36931     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   3.30705  0.14631  3.36166  2.73626     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   0.15719  3.27118  2.73043  3.16274     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   3.30705  0.14631  3.36166  2.73626     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   2.97980  2.52563  3.03204  0.19727     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   2.86982  3.47591  0.13017  3.36931     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   2.86982  3.47591  0.13017  3.36931     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   2.97980  2.52563  3.03204  0.19727     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   3.30705  0.14631  3.36166  2.73626     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   3.30705  0.14631  3.36166  2.73626     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   3.30705  0.14631  3.36166  2.73626     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.97980  2.52563  3.03204  0.19727     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   2.42796  0.63000  2.50086  1.21343     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   2.86982  3.47591  0.13017  3.36931     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.86982  3.47591  0.13017  3.36931     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.97980  2.52563  3.03204  0.19727     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   2.97980  2.52563  3.03204  0.19727     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   2.86982  3.47591  0.13017  3.36931     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   3.30705  0.14631  3.36166  2.73626     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   3.30705  0.14631  3.36166  2.73626     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   2.97980  2.52563  3.03204  0.19727     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   2.86982  3.47591  0.13017  3.36931     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  3_End_Amoebozoa_58S_end_two_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 23:03:29 2012
NSEQ  3
EFFN  3.000000
CKSUM 3221230878
STATS LOCAL MSV       -8.1908  0.72028
STATS LOCAL VITERBI   -7.8625  0.72028
STATS LOCAL FORWARD   -4.0676  0.72028
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   2.17869  1.14382  1.26619  1.25069
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   3.30705  0.14631  3.36166  2.73626      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   2.86982  3.47591  0.13017  3.36931      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   0.15719  3.27118  2.73043  3.16274      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   2.97980  2.52563  3.03204  0.19727      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.86982  3.47591  0.13017  3.36931      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   3.30705  0.14631  3.36166  2.73626      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   2.86982  3.47591  0.13017  3.36931      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   2.86982  3.47591  0.13017  3.36931      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   3.30705  0.14631  3.36166  2.73626      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   3.30705  0.14631  3.36166  2.73626     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   2.97980  2.52563  3.03204  0.19727     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.97980  2.52563  3.03204  0.19727     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   2.86982  3.47591  0.13017  3.36931     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   3.30705  0.14631  3.36166  2.73626     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   2.97980  2.52563  3.03204  0.19727     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   2.97980  2.52563  3.03204  0.19727     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   2.97980  2.52563  3.03204  0.19727     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   3.30705  0.14631  3.36166  2.73626     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   2.86982  3.47591  0.13017  3.36931     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   0.15719  3.27118  2.73043  3.16274     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   2.86982  3.47591  0.13017  3.36931     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   3.30705  0.14631  3.36166  2.73626     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   0.15719  3.27118  2.73043  3.16274     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   3.30705  0.14631  3.36166  2.73626     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   2.97980  2.52563  3.03204  0.19727     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   2.86982  3.47591  0.13017  3.36931     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   2.86982  3.47591  0.13017  3.36931     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   3.30705  0.14631  3.36166  2.73626     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   3.30705  0.14631  3.36166  2.73626     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   3.30705  0.14631  3.36166  2.73626     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.97980  2.52563  3.03204  0.19727     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   2.97980  2.52563  3.03204  0.19727     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   2.86982  3.47591  0.13017  3.36931     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.86982  3.47591  0.13017  3.36931     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.97980  2.52563  3.03204  0.19727     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.97980  2.52563  3.03204  0.19727     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   2.97980  2.52563  3.03204  0.19727     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   2.86982  3.47591  0.13017  3.36931     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   3.30705  0.14631  3.36166  2.73626     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   3.30705  0.14631  3.36166  2.73626     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   2.97980  2.52563  3.03204  0.19727     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   2.86982  3.47591  0.13017  3.36931     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Amoebozoa_58S_start_five_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 22:47:41 2012
NSEQ  5
EFFN  3.266602
CKSUM 3193284995
STATS LOCAL MSV       -8.0914  0.71931
STATS LOCAL VITERBI   -7.6850  0.71931
STATS LOCAL FORWARD   -4.3591  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.55227  1.31654  1.38656  1.30845
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  0.00000        *
      1   3.41221  0.13273  3.46255  2.81376      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
      2   0.14431  3.36214  2.79014  3.26209      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
      3   0.14431  3.36214  2.79014  3.26209      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
      4   3.41221  0.13273  3.46255  2.81376      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
      5   3.07035  2.58352  3.11920  0.18165      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
      6   3.07035  2.58352  3.11920  0.18165      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
      7   3.07035  2.58352  3.11920  0.18165      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
      8   0.14431  3.36214  2.79014  3.26209      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
      9   3.41221  0.13273  3.46255  2.81376      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     10   3.41221  0.13273  3.46255  2.81376     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     11   0.14431  3.36214  2.79014  3.26209     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     12   3.41221  0.13273  3.46255  2.81376     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     13   3.41221  0.13273  3.46255  2.81376     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     14   2.93484  3.56933  0.11920  3.47210     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     15   3.07035  2.58352  3.11920  0.18165     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     16   3.07035  2.58352  3.11920  0.18165     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     17   0.14431  3.36214  2.79014  3.26209     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     18   2.93484  3.56933  0.11920  3.47210     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     19   2.93484  3.56933  0.11920  3.47210     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     20   3.41221  0.13273  3.46255  2.81376     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     21   2.93484  3.56933  0.11920  3.47210     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     22   0.14431  3.36214  2.79014  3.26209     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     23   3.07035  2.58352  3.11920  0.18165     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     24   2.93484  3.56933  0.11920  3.47210     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     25   2.93484  3.56933  0.11920  3.47210     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     26   0.14431  3.36214  2.79014  3.26209     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     27   3.07035  2.58352  3.11920  0.18165     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     28   3.07035  2.58352  3.11920  0.18165     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     29   2.93484  3.56933  0.11920  3.47210     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     30   3.07035  2.58352  3.11920  0.18165     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     31   3.07035  2.58352  3.11920  0.18165     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     32   0.14431  3.36214  2.79014  3.26209     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     33   2.93484  3.56933  0.11920  3.47210     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     34   2.93484  3.56933  0.11920  3.47210     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     35   3.07035  2.58352  3.11920  0.18165     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     36   0.14431  3.36214  2.79014  3.26209     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     37   3.41221  0.13273  3.46255  2.81376     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     38   3.41221  0.13273  3.46255  2.81376     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     39   3.41221  0.13273  3.46255  2.81376     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     40   2.93484  3.56933  0.11920  3.47210     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     41   3.41221  0.13273  3.46255  2.81376     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     42   3.07035  2.58352  3.11920  0.18165     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     43   3.07035  2.58352  3.11920  0.18165     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     44   3.41221  0.13273  3.46255  2.81376     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03727  4.00124  4.00124  1.46634  0.26236  1.09861  0.40547
     45   2.93484  3.56933  0.11920  3.47210     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01881  3.98278        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Amoebozoa_58S_start_four_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 22:47:33 2012
NSEQ  3
EFFN  3.000000
CKSUM 3037931376
STATS LOCAL MSV       -8.1113  0.72021
STATS LOCAL VITERBI   -7.5925  0.72021
STATS LOCAL FORWARD   -4.1062  0.72021
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.55125  1.20479  1.38724  1.43339
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   3.30705  0.14631  3.36166  2.73626      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   0.15719  3.27118  2.73043  3.16274      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   3.30705  0.14631  3.36166  2.73626      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   2.97980  2.52563  3.03204  0.19727      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   3.30705  0.14631  3.36166  2.73626      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   0.15719  3.27118  2.73043  3.16274      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   2.97980  2.52563  3.03204  0.19727      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   0.15719  3.27118  2.73043  3.16274      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   3.30705  0.14631  3.36166  2.73626      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   3.30705  0.14631  3.36166  2.73626     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   0.15719  3.27118  2.73043  3.16274     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   3.30705  0.14631  3.36166  2.73626     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   3.30705  0.14631  3.36166  2.73626     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.86982  3.47591  0.13017  3.36931     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   2.97980  2.52563  3.03204  0.19727     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   2.97980  2.52563  3.03204  0.19727     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   0.15719  3.27118  2.73043  3.16274     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   2.86982  3.47591  0.13017  3.36931     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   2.86982  3.47591  0.13017  3.36931     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   3.30705  0.14631  3.36166  2.73626     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   2.86982  3.47591  0.13017  3.36931     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   0.15719  3.27118  2.73043  3.16274     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   2.97980  2.52563  3.03204  0.19727     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   2.86982  3.47591  0.13017  3.36931     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   2.86982  3.47591  0.13017  3.36931     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   0.15719  3.27118  2.73043  3.16274     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   2.97980  2.52563  3.03204  0.19727     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   2.97980  2.52563  3.03204  0.19727     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   2.86982  3.47591  0.13017  3.36931     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   3.30705  0.14631  3.36166  2.73626     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   2.97980  2.52563  3.03204  0.19727     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   0.15719  3.27118  2.73043  3.16274     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.86982  3.47591  0.13017  3.36931     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   2.86982  3.47591  0.13017  3.36931     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   2.97980  2.52563  3.03204  0.19727     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   0.15719  3.27118  2.73043  3.16274     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   3.30705  0.14631  3.36166  2.73626     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   3.30705  0.14631  3.36166  2.73626     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   3.30705  0.14631  3.36166  2.73626     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   2.86982  3.47591  0.13017  3.36931     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   3.30705  0.14631  3.36166  2.73626     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   2.97980  2.52563  3.03204  0.19727     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   2.97980  2.52563  3.03204  0.19727     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   3.30705  0.14631  3.36166  2.73626     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   2.86982  3.47591  0.13017  3.36931     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Amoebozoa_58S_start_one_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 22:47:04 2012
NSEQ  2
EFFN  2.000000
CKSUM 3357680575
STATS LOCAL MSV       -7.5301  0.72805
STATS LOCAL VITERBI   -8.1447  0.72805
STATS LOCAL FORWARD   -3.6436  0.72805
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.52137  1.28488  1.38085  1.37225
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   0.23862  2.84929  2.43386  2.70756      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   2.81865  0.23582  2.88868  2.35662      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   0.23862  2.84929  2.43386  2.70756      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.57915  2.25909  2.64442  0.28946      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.57915  2.25909  2.64442  0.28946      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.81865  0.23582  2.88868  2.35662      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.57915  2.25909  2.64442  0.28946      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   0.23862  2.84929  2.43386  2.70756      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.81865  0.23582  2.88868  2.35662      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.81865  0.23582  2.88868  2.35662     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.81865  0.23582  2.88868  2.35662     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.53331  3.02441  0.20344  2.88069     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.57915  2.25909  2.64442  0.28946     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.57915  2.25909  2.64442  0.28946     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   0.23862  2.84929  2.43386  2.70756     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.53331  3.02441  0.20344  2.88069     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.53331  3.02441  0.20344  2.88069     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.81865  0.23582  2.88868  2.35662     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   0.23862  2.84929  2.43386  2.70756     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.57915  2.25909  2.64442  0.28946     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.53331  3.02441  0.20344  2.88069     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.53331  3.02441  0.20344  2.88069     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   0.23862  2.84929  2.43386  2.70756     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.57915  2.25909  2.64442  0.28946     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.57915  2.25909  2.64442  0.28946     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.53331  3.02441  0.20344  2.88069     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.81865  0.23582  2.88868  2.35662     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.57915  2.25909  2.64442  0.28946     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   0.23862  2.84929  2.43386  2.70756     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.53331  3.02441  0.20344  2.88069     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.53331  3.02441  0.20344  2.88069     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.57915  2.25909  2.64442  0.28946     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.81865  0.23582  2.88868  2.35662     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.81865  0.23582  2.88868  2.35662     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.81865  0.23582  2.88868  2.35662     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.53331  3.02441  0.20344  2.88069     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.57915  2.25909  2.64442  0.28946     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.57915  2.25909  2.64442  0.28946     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.81865  0.23582  2.88868  2.35662     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.53331  3.02441  0.20344  2.88069     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Amoebozoa_58S_start_three_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 22:47:24 2012
NSEQ  2
EFFN  2.000000
CKSUM 993253840
STATS LOCAL MSV       -7.5156  0.72805
STATS LOCAL VITERBI   -8.1384  0.72805
STATS LOCAL FORWARD   -3.5209  0.72805
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.52247  1.28387  1.38089  1.37236
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  0.00000        *
      1   2.81865  0.23582  2.88868  2.35662      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      2   0.23862  2.84929  2.43386  2.70756      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      3   0.23862  2.84929  2.43386  2.70756      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      4   2.57915  2.25909  2.64442  0.28946      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      5   2.81865  0.23582  2.88868  2.35662      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      6   2.57915  2.25909  2.64442  0.28946      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      7   2.57915  2.25909  2.64442  0.28946      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      8   0.23862  2.84929  2.43386  2.70756      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
      9   2.81865  0.23582  2.88868  2.35662      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     10   2.81865  0.23582  2.88868  2.35662     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     11   0.23862  2.84929  2.43386  2.70756     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     12   2.81865  0.23582  2.88868  2.35662     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     13   2.81865  0.23582  2.88868  2.35662     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     14   2.53331  3.02441  0.20344  2.88069     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     15   2.57915  2.25909  2.64442  0.28946     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     16   2.57915  2.25909  2.64442  0.28946     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     17   0.23862  2.84929  2.43386  2.70756     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     18   2.53331  3.02441  0.20344  2.88069     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     19   2.53331  3.02441  0.20344  2.88069     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     20   2.81865  0.23582  2.88868  2.35662     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     21   2.53331  3.02441  0.20344  2.88069     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     22   0.23862  2.84929  2.43386  2.70756     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     23   2.57915  2.25909  2.64442  0.28946     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     24   2.53331  3.02441  0.20344  2.88069     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     25   2.53331  3.02441  0.20344  2.88069     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     26   0.23862  2.84929  2.43386  2.70756     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     27   2.57915  2.25909  2.64442  0.28946     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     28   2.57915  2.25909  2.64442  0.28946     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     29   2.53331  3.02441  0.20344  2.88069     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     30   2.81865  0.23582  2.88868  2.35662     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     31   2.57915  2.25909  2.64442  0.28946     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     32   0.23862  2.84929  2.43386  2.70756     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     33   2.53331  3.02441  0.20344  2.88069     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     34   2.53331  3.02441  0.20344  2.88069     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     35   2.57915  2.25909  2.64442  0.28946     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     36   0.23862  2.84929  2.43386  2.70756     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     37   2.81865  0.23582  2.88868  2.35662     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     38   2.81865  0.23582  2.88868  2.35662     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     39   2.81865  0.23582  2.88868  2.35662     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     40   2.53331  3.02441  0.20344  2.88069     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     41   2.81865  0.23582  2.88868  2.35662     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     42   2.57915  2.25909  2.64442  0.28946     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     43   2.57915  2.25909  2.64442  0.28946     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     44   2.81865  0.23582  2.88868  2.35662     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.04879  3.73767  3.73767  1.46634  0.26236  1.09861  0.40547
     45   2.53331  3.02441  0.20344  2.88069     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.02469  3.71357        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  2_5.8_Amoebozoa_58S_start_two_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 22:47:15 2012
NSEQ  4
EFFN  3.175781
CKSUM 253078905
STATS LOCAL MSV       -8.1442  0.71933
STATS LOCAL VITERBI   -7.5796  0.71933
STATS LOCAL FORWARD   -4.2294  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.47959  1.15119  1.38788  1.57791
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  0.00000        *
      1   3.37748  0.13704  3.42926  2.78832      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
      2   0.14843  3.33206  2.77050  3.22920      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
      3   3.37748  0.13704  3.42926  2.78832      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
      4   3.37748  0.13704  3.42926  2.78832      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
      5   3.37748  0.13704  3.42926  2.78832      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
      6   0.14843  3.33206  2.77050  3.22920      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
      7   3.04021  2.56430  3.09020  0.18668      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
      8   0.14843  3.33206  2.77050  3.22920      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
      9   3.37748  0.13704  3.42926  2.78832      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     10   3.37748  0.13704  3.42926  2.78832     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     11   0.14843  3.33206  2.77050  3.22920     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     12   3.37748  0.13704  3.42926  2.78832     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     13   3.37748  0.13704  3.42926  2.78832     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     14   2.91360  3.53861  0.12268  3.43825     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     15   3.04021  2.56430  3.09020  0.18668     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     16   0.14843  3.33206  2.77050  3.22920     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     17   0.14843  3.33206  2.77050  3.22920     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     18   2.91360  3.53861  0.12268  3.43825     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     19   2.91360  3.53861  0.12268  3.43825     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     20   3.37748  0.13704  3.42926  2.78832     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     21   2.91360  3.53861  0.12268  3.43825     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     22   0.14843  3.33206  2.77050  3.22920     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     23   3.04021  2.56430  3.09020  0.18668     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     24   2.91360  3.53861  0.12268  3.43825     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     25   2.91360  3.53861  0.12268  3.43825     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     26   0.14843  3.33206  2.77050  3.22920     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     27   3.04021  2.56430  3.09020  0.18668     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     28   3.04021  2.56430  3.09020  0.18668     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     29   2.91360  3.53861  0.12268  3.43825     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     30   3.37748  0.13704  3.42926  2.78832     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     31   3.04021  2.56430  3.09020  0.18668     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     32   0.14843  3.33206  2.77050  3.22920     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     33   2.91360  3.53861  0.12268  3.43825     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     34   2.91360  3.53861  0.12268  3.43825     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     35   3.04021  2.56430  3.09020  0.18668     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     36   0.14843  3.33206  2.77050  3.22920     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     37   3.37748  0.13704  3.42926  2.78832     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     38   3.37748  0.13704  3.42926  2.78832     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     39   3.37748  0.13704  3.42926  2.78832     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     40   2.91360  3.53861  0.12268  3.43825     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     41   3.37748  0.13704  3.42926  2.78832     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     42   3.04021  2.56430  3.09020  0.18668     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     43   3.04021  2.56430  3.09020  0.18668     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     44   3.37748  0.13704  3.42926  2.78832     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     45   2.91360  3.53861  0.12268  3.43825     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01914  3.96571        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Amoebozoa_4_LSU_start_onea_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 23:25:49 2012
NSEQ  51
EFFN  3.408508
CKSUM 3712596225
STATS LOCAL MSV       -7.7739  0.71932
STATS LOCAL VITERBI   -7.6712  0.71932
STATS LOCAL FORWARD   -4.0000  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   0.96530  1.36587  1.68894  1.71893
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02687  4.02687  1.46634  0.26236  0.00000        *
      1   2.68706  3.32674  0.16517  3.03111      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
      2   3.46430  0.12655  3.51242  2.85165      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
      3   0.16058  3.32313  2.62437  3.22332      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
      4   0.13837  3.40735  2.81949  3.31159      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
      5   2.96633  3.61517  0.11420  3.52270      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
      6   0.13837  3.40735  2.81949  3.31159      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
      7   3.46430  0.12655  3.51242  2.85165      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
      8   3.46430  0.12655  3.51242  2.85165      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
      9   3.11604  2.61257  3.16314  0.17432      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
     10   3.46430  0.12655  3.51242  2.85165     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
     11   0.13837  3.40735  2.81949  3.31159     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
     12   0.13837  3.40735  2.81949  3.31159     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
     13   0.13837  3.40735  2.81949  3.31159     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
     14   3.11604  2.61257  3.16314  0.17432     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
     15   3.46430  0.12655  3.51242  2.85165     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
     16   0.13837  3.40735  2.81949  3.31159     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
     17   0.13837  3.40735  2.81949  3.31159     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
     18   0.17671  3.20419  2.73061  2.87869     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
     19   3.34985  0.15124  3.40150  2.63187     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
     20   0.13837  3.40735  2.81949  3.31159     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
     21   0.13837  3.40735  2.81949  3.31159     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
     22   2.96633  3.61517  0.11420  3.52270     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
     23   2.96633  3.61517  0.11420  3.52270     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
     24   0.13837  3.40735  2.81949  3.31159     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
     25   3.11604  2.61257  3.16314  0.17432     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
     26   0.13837  3.40735  2.81949  3.31159     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
     27   3.46430  0.12655  3.51242  2.85165     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
     28   3.46430  0.12655  3.51242  2.85165     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
     29   3.46430  0.12655  3.51242  2.85165     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
     30   2.96633  3.61517  0.11420  3.52270     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
     31   3.46430  0.12655  3.51242  2.85165     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
     32   3.11604  2.61257  3.16314  0.17432     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
     33   2.96633  3.61517  0.11420  3.52270     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
     34   0.13837  3.40735  2.81949  3.31159     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
     35   0.13837  3.40735  2.81949  3.31159     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
     36   2.44645  0.73953  2.51879  1.03422     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
     37   3.11604  2.61257  3.16314  0.17432     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
     38   3.11604  2.61257  3.16314  0.17432     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
     39   0.13837  3.40735  2.81949  3.31159     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
     40   0.13837  3.40735  2.81949  3.31159     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
     41   2.96633  3.61517  0.11420  3.52270     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
     42   3.46430  0.12655  3.51242  2.85165     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
     43   0.13837  3.40735  2.81949  3.31159     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
     44   3.11604  2.61257  3.16314  0.17432     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03631  4.02687  4.02687  1.46634  0.26236  1.09861  0.40547
     45   0.13837  3.40735  2.81949  3.31159     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01832  4.00888        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Amoebozoa_4_LSU_start_oneb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 23:25:57 2012
NSEQ  6
EFFN  3.559570
CKSUM 4179308964
STATS LOCAL MSV       -7.6411  0.71932
STATS LOCAL VITERBI   -7.6553  0.71932
STATS LOCAL FORWARD   -3.8849  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.09739  1.36145  1.63014  1.54147
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  0.00000        *
      1   2.09189  1.01591  0.96609  2.01061      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
      2   0.13263  3.45319  2.84909  3.36185      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
      3   3.16284  2.64227  3.20813  0.16716      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
      4   3.51693  0.12064  3.56276  2.88963      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
      5   2.99774  3.66122  0.10943  3.57364      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
      6   0.13263  3.45319  2.84909  3.36185      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
      7   3.51693  0.12064  3.56276  2.88963      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
      8   3.51693  0.12064  3.56276  2.88963      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
      9   3.16284  2.64227  3.20813  0.16716      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     10   3.51693  0.12064  3.56276  2.88963     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     11   0.13263  3.45319  2.84909  3.36185     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     12   0.13263  3.45319  2.84909  3.36185     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     13   0.13263  3.45319  2.84909  3.36185     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     14   3.16284  2.64227  3.20813  0.16716     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     15   3.51693  0.12064  3.56276  2.88963     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     16   0.13263  3.45319  2.84909  3.36185     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     17   0.13263  3.45319  2.84909  3.36185     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     18   2.99774  3.66122  0.10943  3.57364     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     19   3.16284  2.64227  3.20813  0.16716     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     20   2.99774  3.66122  0.10943  3.57364     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     21   0.13263  3.45319  2.84909  3.36185     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     22   2.99774  3.66122  0.10943  3.57364     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     23   0.13263  3.45319  2.84909  3.36185     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     24   2.12338  2.17434  0.99832  0.92082     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     25   3.16284  2.64227  3.20813  0.16716     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     26   0.13263  3.45319  2.84909  3.36185     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     27   3.51693  0.12064  3.56276  2.88963     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     28   3.51693  0.12064  3.56276  2.88963     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     29   3.51693  0.12064  3.56276  2.88963     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     30   2.99774  3.66122  0.10943  3.57364     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     31   3.51693  0.12064  3.56276  2.88963     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     32   3.16284  2.64227  3.20813  0.16716     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     33   2.99774  3.66122  0.10943  3.57364     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     34   0.13263  3.45319  2.84909  3.36185     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     35   0.13263  3.45319  2.84909  3.36185     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     36   3.51693  0.12064  3.56276  2.88963     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     37   3.16284  2.64227  3.20813  0.16716     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     38   3.16284  2.64227  3.20813  0.16716     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     39   0.13263  3.45319  2.84909  3.36185     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     40   0.13263  3.45319  2.84909  3.36185     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     41   2.99774  3.66122  0.10943  3.57364     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     42   3.51693  0.12064  3.56276  2.88963     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     43   0.13263  3.45319  2.84909  3.36185     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     44   3.16284  2.64227  3.20813  0.16716     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03534  4.05345  4.05345  1.46634  0.26236  1.09861  0.40547
     45   0.13263  3.45319  2.84909  3.36185     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01783  4.03593        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Amoebozoa_4_LSU_start_onec_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 23:26:03 2012
NSEQ  63
EFFN  3.318420
CKSUM 1512418120
STATS LOCAL MSV       -8.1399  0.71933
STATS LOCAL VITERBI   -7.6092  0.71933
STATS LOCAL FORWARD   -3.8899  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.16320  1.31838  1.69977  1.43877
          1.38629  1.38629  1.38629  1.38629
          0.03692  4.01068  4.01068  1.46634  0.26236  0.00000        *
      1   3.02134  2.43366  3.07178  0.20186      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
      2   3.43153  0.13040  3.48106  2.82785      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
      3   0.14208  3.37890  2.80104  3.28043      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
      4   3.43153  0.13040  3.48106  2.82785      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
      5   2.94658  3.58637  0.11731  3.49090      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
      6   0.14208  3.37890  2.80104  3.28043      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
      7   3.43153  0.13040  3.48106  2.82785      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
      8   3.43153  0.13040  3.48106  2.82785      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
      9   3.08723  2.59426  3.13544  0.17890      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
     10   3.43153  0.13040  3.48106  2.82785     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
     11   0.14208  3.37890  2.80104  3.28043     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
     12   2.73608  2.52824  2.97503  0.21774     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
     13   0.14208  3.37890  2.80104  3.28043     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
     14   3.02134  2.43366  3.07178  0.20186     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
     15   3.43153  0.13040  3.48106  2.82785     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
     16   0.14208  3.37890  2.80104  3.28043     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
     17   0.14208  3.37890  2.80104  3.28043     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
     18   2.94658  3.58637  0.11731  3.49090     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
     19   3.08723  2.59426  3.13544  0.17890     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
     20   2.94658  3.58637  0.11731  3.49090     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
     21   0.14208  3.37890  2.80104  3.28043     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
     22   2.94658  3.58637  0.11731  3.49090     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
     23   0.14208  3.37890  2.80104  3.28043     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
     24   3.08723  2.59426  3.13544  0.17890     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
     25   3.08723  2.59426  3.13544  0.17890     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
     26   0.14208  3.37890  2.80104  3.28043     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
     27   3.43153  0.13040  3.48106  2.82785     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
     28   3.43153  0.13040  3.48106  2.82785     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
     29   3.43153  0.13040  3.48106  2.82785     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
     30   2.94658  3.58637  0.11731  3.49090     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
     31   3.43153  0.13040  3.48106  2.82785     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
     32   3.08723  2.59426  3.13544  0.17890     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
     33   2.94658  3.58637  0.11731  3.49090     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
     34   0.14208  3.37890  2.80104  3.28043     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
     35   0.14208  3.37890  2.80104  3.28043     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
     36   3.43153  0.13040  3.48106  2.82785     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
     37   3.08723  2.59426  3.13544  0.17890     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
     38   3.08723  2.59426  3.13544  0.17890     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
     39   0.14208  3.37890  2.80104  3.28043     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
     40   0.14208  3.37890  2.80104  3.28043     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
     41   2.89044  3.47872  0.12838  3.37899     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
     42   3.43153  0.13040  3.48106  2.82785     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
     43   0.14208  3.37890  2.80104  3.28043     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
     44   3.08723  2.59426  3.13544  0.17890     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03692  4.01068  4.01068  1.46634  0.26236  1.09861  0.40547
     45   0.14208  3.37890  2.80104  3.28043     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01863  3.99239        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Amoebozoa_4_LSU_start_oned_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 23:26:08 2012
NSEQ  24
EFFN  3.301758
CKSUM 3316240930
STATS LOCAL MSV       -8.1199  0.71932
STATS LOCAL VITERBI   -7.7229  0.71932
STATS LOCAL FORWARD   -3.9195  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.06159  1.38916  1.79405  1.43329
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  0.00000        *
      1   3.08183  2.59083  3.13024  0.17977      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
      2   0.14279  3.37354  2.79756  3.27457      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
      3   3.08183  2.59083  3.13024  0.17977      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
      4   3.42536  0.13114  3.47515  2.82335      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
      5   0.14279  3.37354  2.79756  3.27457      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
      6   0.14279  3.37354  2.79756  3.27457      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
      7   3.42536  0.13114  3.47515  2.82335      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
      8   3.42536  0.13114  3.47515  2.82335      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
      9   3.08183  2.59083  3.13024  0.17977      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     10   3.42536  0.13114  3.47515  2.82335     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     11   0.14279  3.37354  2.79756  3.27457     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     12   0.14279  3.37354  2.79756  3.27457     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     13   0.14279  3.37354  2.79756  3.27457     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     14   3.08183  2.59083  3.13024  0.17977     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     15   3.42536  0.13114  3.47515  2.82335     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     16   0.14279  3.37354  2.79756  3.27457     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     17   0.14279  3.37354  2.79756  3.27457     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     18   2.94283  3.58093  0.11791  3.48489     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     19   3.08183  2.59083  3.13024  0.17977     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     20   2.94283  3.58093  0.11791  3.48489     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     21   0.14279  3.37354  2.79756  3.27457     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     22   2.94283  3.58093  0.11791  3.48489     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     23   0.14279  3.37354  2.79756  3.27457     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     24   3.08183  2.59083  3.13024  0.17977     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     25   3.08183  2.59083  3.13024  0.17977     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     26   0.14279  3.37354  2.79756  3.27457     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     27   3.42536  0.13114  3.47515  2.82335     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     28   3.42536  0.13114  3.47515  2.82335     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     29   3.42536  0.13114  3.47515  2.82335     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     30   2.94283  3.58093  0.11791  3.48489     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     31   3.42536  0.13114  3.47515  2.82335     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     32   3.08183  2.59083  3.13024  0.17977     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     33   2.94283  3.58093  0.11791  3.48489     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     34   0.14279  3.37354  2.79756  3.27457     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     35   0.14279  3.37354  2.79756  3.27457     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     36   3.42536  0.13114  3.47515  2.82335     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     37   3.08183  2.59083  3.13024  0.17977     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     38   3.08183  2.59083  3.13024  0.17977     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     39   0.14279  3.37354  2.79756  3.27457     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     40   0.14279  3.37354  2.79756  3.27457     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     41   2.94283  3.58093  0.11791  3.48489     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     42   3.42536  0.13114  3.47515  2.82335     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     43   0.14279  3.37354  2.79756  3.27457     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     44   3.08183  2.59083  3.13024  0.17977     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     45   0.14279  3.37354  2.79756  3.27457     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01869  3.98931        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Amoebozoa_4_LSU_start_threea_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 23:27:32 2012
NSEQ  91
EFFN  3.357513
CKSUM 3218427169
STATS LOCAL MSV       -8.0690  0.71933
STATS LOCAL VITERBI   -7.5442  0.71933
STATS LOCAL FORWARD   -4.3497  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.34181  1.24914  1.80713  1.24565
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01774  4.01774  1.46634  0.26236  0.00000        *
      1   0.14044  3.39135  2.80912  3.29407      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
      2   3.09981  2.60227  3.14754  0.17688      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
      3   3.09981  2.60227  3.14754  0.17688      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
      4   3.44588  0.12869  3.49480  2.83829      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
      5   3.44588  0.12869  3.49480  2.83829      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
      6   2.95525  3.59899  0.11594  3.50483      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
      7   3.44588  0.12869  3.49480  2.83829      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
      8   3.44588  0.12869  3.49480  2.83829      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
      9   3.09981  2.60227  3.14754  0.17688      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
     10   3.44588  0.12869  3.49480  2.83829     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
     11   0.14044  3.39135  2.80912  3.29407     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
     12   3.44588  0.12869  3.49480  2.83829     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
     13   3.44588  0.12869  3.49480  2.83829     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
     14   3.09981  2.60227  3.14754  0.17688     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
     15   3.09981  2.60227  3.14754  0.17688     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
     16   2.90007  2.52341  2.72811  0.22383     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
     17   2.95525  3.59899  0.11594  3.50483     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
     18   3.09981  2.60227  3.14754  0.17688     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
     19   0.14044  3.39135  2.80912  3.29407     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
     20   0.14044  3.39135  2.80912  3.29407     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
     21   2.95525  3.59899  0.11594  3.50483     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
     22   0.14044  3.39135  2.80912  3.29407     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
     23   3.09981  2.60227  3.14754  0.17688     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
     24   3.09981  2.60227  3.14754  0.17688     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
     25   0.14044  3.39135  2.80912  3.29407     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
     26   3.44588  0.12869  3.49480  2.83829     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
     27   3.44588  0.12869  3.49480  2.83829     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
     28   3.44588  0.12869  3.49480  2.83829     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
     29   2.95525  3.59899  0.11594  3.50483     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
     30   3.44588  0.12869  3.49480  2.83829     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
     31   3.09981  2.60227  3.14754  0.17688     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
     32   2.95525  3.59899  0.11594  3.50483     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
     33   0.14044  3.39135  2.80912  3.29407     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
     34   0.14044  3.39135  2.80912  3.29407     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
     35   3.44588  0.12869  3.49480  2.83829     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
     36   3.09981  2.60227  3.14754  0.17688     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
     37   3.09981  2.60227  3.14754  0.17688     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
     38   0.14044  3.39135  2.80912  3.29407     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
     39   0.14044  3.39135  2.80912  3.29407     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
     40   2.95525  3.59899  0.11594  3.50483     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
     41   3.44588  0.12869  3.49480  2.83829     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
     42   0.14044  3.39135  2.80912  3.29407     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
     43   3.09981  2.60227  3.14754  0.17688     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
     44   0.14044  3.39135  2.80912  3.29407     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03665  4.01774  4.01774  1.46634  0.26236  1.09861  0.40547
     45   3.09981  2.60227  3.14754  0.17688     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01849  3.99958        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Amoebozoa_4_LSU_start_threeb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 23:27:39 2012
NSEQ  37
EFFN  3.355835
CKSUM 748456799
STATS LOCAL MSV       -8.0028  0.71934
STATS LOCAL VITERBI   -7.6102  0.71934
STATS LOCAL FORWARD   -4.0065  0.71934
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.21748  1.37885  1.69924  1.31180
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01743  4.01743  1.46634  0.26236  0.00000        *
      1   0.14051  3.39082  2.80878  3.29348      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
      2   3.09928  2.60192  3.14702  0.17697      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
      3   2.95488  3.59846  0.11600  3.50424      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
      4   3.09928  2.60192  3.14702  0.17697      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
      5   3.09928  2.60192  3.14702  0.17697      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
      6   2.95488  3.59846  0.11600  3.50424      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
      7   3.44527  0.12877  3.49421  2.83784      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
      8   3.44527  0.12877  3.49421  2.83784      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
      9   3.09928  2.60192  3.14702  0.17697      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
     10   3.44527  0.12877  3.49421  2.83784     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
     11   0.14051  3.39082  2.80878  3.29348     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
     12   3.09928  2.60192  3.14702  0.17697     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
     13   3.44527  0.12877  3.49421  2.83784     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
     14   2.83510  2.01766  2.89263  0.28384     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
     15   0.14051  3.39082  2.80878  3.29348     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
     16   0.14051  3.39082  2.80878  3.29348     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
     17   2.95488  3.59846  0.11600  3.50424     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
     18   3.09928  2.60192  3.14702  0.17697     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
     19   0.14051  3.39082  2.80878  3.29348     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
     20   0.14051  3.39082  2.80878  3.29348     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
     21   2.95488  3.59846  0.11600  3.50424     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
     22   0.14051  3.39082  2.80878  3.29348     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
     23   3.44527  0.12877  3.49421  2.83784     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
     24   3.09928  2.60192  3.14702  0.17697     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
     25   0.14051  3.39082  2.80878  3.29348     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
     26   3.44527  0.12877  3.49421  2.83784     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
     27   3.44527  0.12877  3.49421  2.83784     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
     28   3.44527  0.12877  3.49421  2.83784     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
     29   2.95488  3.59846  0.11600  3.50424     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
     30   3.44527  0.12877  3.49421  2.83784     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
     31   3.09928  2.60192  3.14702  0.17697     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
     32   2.95488  3.59846  0.11600  3.50424     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
     33   0.14051  3.39082  2.80878  3.29348     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
     34   0.14051  3.39082  2.80878  3.29348     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
     35   3.44527  0.12877  3.49421  2.83784     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
     36   3.09928  2.60192  3.14702  0.17697     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
     37   3.09928  2.60192  3.14702  0.17697     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
     38   0.14051  3.39082  2.80878  3.29348     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
     39   0.14051  3.39082  2.80878  3.29348     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
     40   2.95488  3.59846  0.11600  3.50424     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
     41   3.44527  0.12877  3.49421  2.83784     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
     42   0.14051  3.39082  2.80878  3.29348     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
     43   3.09928  2.60192  3.14702  0.17697     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
     44   0.14051  3.39082  2.80878  3.29348     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03666  4.01743  4.01743  1.46634  0.26236  1.09861  0.40547
     45   3.09928  2.60192  3.14702  0.17697     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01850  3.99927        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Amoebozoa_4_LSU_start_threec_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 23:27:48 2012
NSEQ  24
EFFN  3.301758
CKSUM 2052849582
STATS LOCAL MSV       -8.0328  0.71932
STATS LOCAL VITERBI   -7.7296  0.71932
STATS LOCAL FORWARD   -4.1535  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.34051  1.31747  1.61312  1.30486
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  0.00000        *
      1   0.14279  3.37354  2.79756  3.27457      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
      2   3.08183  2.59083  3.13024  0.17977      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
      3   2.94283  3.58093  0.11791  3.48489      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
      4   3.08183  2.59083  3.13024  0.17977      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
      5   3.08183  2.59083  3.13024  0.17977      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
      6   2.94283  3.58093  0.11791  3.48489      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
      7   3.42536  0.13114  3.47515  2.82335      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
      8   3.42536  0.13114  3.47515  2.82335      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
      9   3.08183  2.59083  3.13024  0.17977      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     10   3.42536  0.13114  3.47515  2.82335     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     11   0.14279  3.37354  2.79756  3.27457     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     12   3.42536  0.13114  3.47515  2.82335     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     13   3.42536  0.13114  3.47515  2.82335     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     14   3.08183  2.59083  3.13024  0.17977     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     15   3.08183  2.59083  3.13024  0.17977     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     16   2.94283  3.58093  0.11791  3.48489     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     17   2.94283  3.58093  0.11791  3.48489     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     18   3.08183  2.59083  3.13024  0.17977     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     19   0.14279  3.37354  2.79756  3.27457     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     20   0.14279  3.37354  2.79756  3.27457     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     21   2.94283  3.58093  0.11791  3.48489     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     22   0.14279  3.37354  2.79756  3.27457     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     23   3.42536  0.13114  3.47515  2.82335     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     24   3.08183  2.59083  3.13024  0.17977     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     25   0.14279  3.37354  2.79756  3.27457     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     26   3.42536  0.13114  3.47515  2.82335     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     27   3.42536  0.13114  3.47515  2.82335     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     28   3.42536  0.13114  3.47515  2.82335     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     29   2.94283  3.58093  0.11791  3.48489     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     30   3.42536  0.13114  3.47515  2.82335     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     31   3.08183  2.59083  3.13024  0.17977     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     32   2.94283  3.58093  0.11791  3.48489     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     33   0.14279  3.37354  2.79756  3.27457     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     34   0.14279  3.37354  2.79756  3.27457     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     35   3.42536  0.13114  3.47515  2.82335     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     36   3.08183  2.59083  3.13024  0.17977     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     37   3.08183  2.59083  3.13024  0.17977     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     38   0.14279  3.37354  2.79756  3.27457     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     39   0.14279  3.37354  2.79756  3.27457     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     40   2.94283  3.58093  0.11791  3.48489     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     41   3.42536  0.13114  3.47515  2.82335     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     42   0.14279  3.37354  2.79756  3.27457     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     43   3.08183  2.59083  3.13024  0.17977     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     44   0.14279  3.37354  2.79756  3.27457     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03703  4.00765  4.00765  1.46634  0.26236  1.09861  0.40547
     45   3.08183  2.59083  3.13024  0.17977     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01869  3.98931        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  4_LSU_Amoebozoa_4_LSU_start_two_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 23:27:18 2012
NSEQ  90
EFFN  3.589783
CKSUM 608676318
STATS LOCAL MSV       -7.8555  0.71932
STATS LOCAL VITERBI   -7.7531  0.71932
STATS LOCAL FORWARD   -4.2533  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.23957  1.30603  1.77951  1.30608
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05868  4.05868  1.46634  0.26236  0.00000        *
      1   0.67175  2.28147  2.23032  1.27454      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
      2   3.17198  2.64807  3.21692  0.16580      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
      3   2.21370  2.19922  1.35245  0.65160      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
      4   3.17198  2.64807  3.21692  0.16580      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
      5   3.52713  0.11953  3.57250  2.89695      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
      6   3.00378  3.67011  0.10853  3.58348      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
      7   3.52713  0.11953  3.57250  2.89695      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
      8   3.52713  0.11953  3.57250  2.89695      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
      9   3.17198  2.64807  3.21692  0.16580      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
     10   3.52713  0.11953  3.57250  2.89695     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
     11   0.13155  3.46209  2.85482  3.37161     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
     12   3.17198  2.64807  3.21692  0.16580     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
     13   3.52713  0.11953  3.57250  2.89695     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
     14   3.52713  0.11953  3.57250  2.89695     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
     15   0.13155  3.46209  2.85482  3.37161     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
     16   0.13155  3.46209  2.85482  3.37161     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
     17   3.00378  3.67011  0.10853  3.58348     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
     18   3.17198  2.64807  3.21692  0.16580     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
     19   0.13155  3.46209  2.85482  3.37161     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
     20   0.13155  3.46209  2.85482  3.37161     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
     21   3.00378  3.67011  0.10853  3.58348     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
     22   0.13155  3.46209  2.85482  3.37161     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
     23   3.17198  2.64807  3.21692  0.16580     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
     24   3.17198  2.64807  3.21692  0.16580     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
     25   0.13155  3.46209  2.85482  3.37161     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
     26   3.52713  0.11953  3.57250  2.89695     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
     27   3.52713  0.11953  3.57250  2.89695     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
     28   3.52713  0.11953  3.57250  2.89695     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
     29   3.00378  3.67011  0.10853  3.58348     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
     30   3.52713  0.11953  3.57250  2.89695     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
     31   3.17198  2.64807  3.21692  0.16580     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
     32   3.00378  3.67011  0.10853  3.58348     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
     33   0.13155  3.46209  2.85482  3.37161     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
     34   0.13155  3.46209  2.85482  3.37161     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
     35   3.52713  0.11953  3.57250  2.89695     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
     36   3.17198  2.64807  3.21692  0.16580     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
     37   3.17198  2.64807  3.21692  0.16580     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
     38   0.13155  3.46209  2.85482  3.37161     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
     39   0.13155  3.46209  2.85482  3.37161     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
     40   3.00378  3.67011  0.10853  3.58348     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
     41   3.52713  0.11953  3.57250  2.89695     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
     42   0.13155  3.46209  2.85482  3.37161     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
     43   3.17198  2.64807  3.21692  0.16580     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
     44   0.13155  3.46209  2.85482  3.37161     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03515  4.05868  4.05868  1.46634  0.26236  1.09861  0.40547
     45   3.17198  2.64807  3.21692  0.16580     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01773  4.04126        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  1_SSU_Amoebozoa_1_SSU_end_onea_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 22:26:03 2012
NSEQ  50
EFFN  3.311157
CKSUM 580143303
STATS LOCAL MSV       -8.0808  0.71933
STATS LOCAL VITERBI   -7.6783  0.71933
STATS LOCAL FORWARD   -4.0882  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.26882  1.71702  1.24405  1.38222
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00936  4.00936  1.46634  0.26236  0.00000        *
      1   0.14238  3.37657  2.79952  3.27788      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
      2   2.94495  3.58400  0.11757  3.48828      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
      3   3.01055  2.41279  3.06138  0.20537      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
      4   3.42885  0.13072  3.47849  2.82590      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
      5   2.94495  3.58400  0.11757  3.48828      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
      6   3.01055  2.41279  3.06138  0.20537      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
      7   0.14238  3.37657  2.79952  3.27788      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
      8   0.14238  3.37657  2.79952  3.27788      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
      9   3.42885  0.13072  3.47849  2.82590      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
     10   0.14238  3.37657  2.79952  3.27788     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
     11   0.14238  3.37657  2.79952  3.27788     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
     12   2.94495  3.58400  0.11757  3.48828     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
     13   2.94495  3.58400  0.11757  3.48828     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
     14   3.08488  2.59277  3.13318  0.17928     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
     15   0.14238  3.37657  2.79952  3.27788     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
     16   3.08488  2.59277  3.13318  0.17928     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
     17   3.08488  2.59277  3.13318  0.17928     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
     18   3.24463  0.17310  3.29975  2.48809     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
     19   2.94495  3.58400  0.11757  3.48828     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
     20   3.08488  2.59277  3.13318  0.17928     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
     21   0.14238  3.37657  2.79952  3.27788     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
     22   2.94495  3.58400  0.11757  3.48828     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
     23   2.94495  3.58400  0.11757  3.48828     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
     24   3.08488  2.59277  3.13318  0.17928     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
     25   2.94495  3.58400  0.11757  3.48828     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
     26   0.14238  3.37657  2.79952  3.27788     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
     27   0.14238  3.37657  2.79952  3.27788     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
     28   3.42885  0.13072  3.47849  2.82590     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
     29   3.42885  0.13072  3.47849  2.82590     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
     30   3.01055  2.41279  3.06138  0.20537     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
     31   2.94495  3.58400  0.11757  3.48828     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
     32   3.31480  0.15590  3.36776  2.60981     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
     33   2.94495  3.58400  0.11757  3.48828     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
     34   2.94495  3.58400  0.11757  3.48828     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
     35   0.14238  3.37657  2.79952  3.27788     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
     36   3.08488  2.59277  3.13318  0.17928     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
     37   2.94495  3.58400  0.11757  3.48828     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
     38   2.94495  3.58400  0.11757  3.48828     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
     39   0.14238  3.37657  2.79952  3.27788     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
     40   3.08488  2.59277  3.13318  0.17928     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
     41   3.42885  0.13072  3.47849  2.82590     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
     42   0.14238  3.37657  2.79952  3.27788     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
     43   3.08488  2.59277  3.13318  0.17928     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
     44   3.08488  2.59277  3.13318  0.17928     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03696  4.00936  4.00936  1.46634  0.26236  1.09861  0.40547
     45   0.14238  3.37657  2.79952  3.27788     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01865  3.99105        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  1_SSU_Amoebozoa_1_SSU_end_oneb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 22:26:13 2012
NSEQ  12
EFFN  3.477539
CKSUM 3078232557
STATS LOCAL MSV       -7.3971  0.71932
STATS LOCAL VITERBI   -7.6461  0.71932
STATS LOCAL FORWARD   -4.1544  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.31721  1.62507  1.26310  1.37656
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  0.00000        *
      1   0.13568  3.42858  2.83322  3.33486      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
      2   2.98094  3.63655  0.11196  3.54635      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
      3   3.13765  2.62630  3.18392  0.17097      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
      4   3.48870  0.12377  3.53577  2.86929      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
      5   2.98094  3.63655  0.11196  3.54635      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
      6   3.13765  2.62630  3.18392  0.17097      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
      7   0.13568  3.42858  2.83322  3.33486      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
      8   0.13568  3.42858  2.83322  3.33486      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
      9   3.48870  0.12377  3.53577  2.86929      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     10   0.13568  3.42858  2.83322  3.33486     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     11   0.13568  3.42858  2.83322  3.33486     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     12   2.98094  3.63655  0.11196  3.54635     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     13   2.98094  3.63655  0.11196  3.54635     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     14   3.13765  2.62630  3.18392  0.17097     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     15   0.13568  3.42858  2.83322  3.33486     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     16   3.13765  2.62630  3.18392  0.17097     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     17   3.48870  0.12377  3.53577  2.86929     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     18   2.78716  0.27620  2.35451  2.46742     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     19   2.98094  3.63655  0.11196  3.54635     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     20   3.13765  2.62630  3.18392  0.17097     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     21   0.13568  3.42858  2.83322  3.33486     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.32896  4.03910  1.33668  1.46634  0.26236  1.09861  0.40547
     22   2.56939  3.07022  0.19408  2.92959     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.04779  3.75793  3.75793  1.46634  0.26236  0.12583  2.13510
     23   2.98094  3.63655  0.11196  3.54635     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     24   3.13765  2.62630  3.18392  0.17097     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     25   2.98094  3.63655  0.11196  3.54635     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     26   0.13568  3.42858  2.83322  3.33486     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     27   0.13568  3.42858  2.83322  3.33486     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     28   3.48870  0.12377  3.53577  2.86929     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     29   3.48870  0.12377  3.53577  2.86929     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     30   3.13765  2.62630  3.18392  0.17097     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     31   2.98094  3.63655  0.11196  3.54635     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     32   3.48870  0.12377  3.53577  2.86929     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     33   2.62697  2.44597  0.24485  2.84327     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     34   2.98094  3.63655  0.11196  3.54635     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     35   0.13568  3.42858  2.83322  3.33486     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     36   3.13765  2.62630  3.18392  0.17097     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     37   2.98094  3.63655  0.11196  3.54635     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     38   2.98094  3.63655  0.11196  3.54635     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     39   0.13568  3.42858  2.83322  3.33486     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     40   3.13765  2.62630  3.18392  0.17097     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     41   3.48870  0.12377  3.53577  2.86929     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     42   0.13568  3.42858  2.83322  3.33486     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     43   3.13765  2.62630  3.18392  0.17097     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     44   3.13765  2.62630  3.18392  0.17097     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03586  4.03910  4.03910  1.46634  0.26236  1.09861  0.40547
     45   2.10018  2.39300  2.66436  0.33328     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01809  4.02133        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  1_SSU_Amoebozoa_1_SSU_end_onec_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 22:26:19 2012
NSEQ  13
EFFN  3.240479
CKSUM 1661502292
STATS LOCAL MSV       -8.0638  0.71932
STATS LOCAL VITERBI   -7.7447  0.71932
STATS LOCAL FORWARD   -4.3884  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.34170  1.54513  1.18912  1.51038
          1.38629  1.38629  1.38629  1.38629
          0.03745  3.99645  3.99645  1.46634  0.26236  0.00000        *
      1   0.14547  3.35358  2.78456  3.25273      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
      2   2.92882  3.56061  0.12017  3.46248      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
      3   3.06176  2.57805  3.11093  0.18307      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
      4   3.40234  0.13394  3.45309  2.80654      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
      5   2.92882  3.56061  0.12017  3.46248      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
      6   3.06176  2.57805  3.11093  0.18307      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
      7   0.14547  3.35358  2.78456  3.25273      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
      8   0.14547  3.35358  2.78456  3.25273      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
      9   3.40234  0.13394  3.45309  2.80654      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
     10   0.14547  3.35358  2.78456  3.25273     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
     11   0.14547  3.35358  2.78456  3.25273     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
     12   2.92882  3.56061  0.12017  3.46248     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
     13   2.92882  3.56061  0.12017  3.46248     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
     14   3.06176  2.57805  3.11093  0.18307     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
     15   3.40234  0.13394  3.45309  2.80654     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
     16   3.06176  2.57805  3.11093  0.18307     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
     17   3.40234  0.13394  3.45309  2.80654     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
     18   3.40234  0.13394  3.45309  2.80654     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
     19   2.92882  3.56061  0.12017  3.46248     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
     20   3.06176  2.57805  3.11093  0.18307     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
     21   0.14547  3.35358  2.78456  3.25273     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
     22   2.92882  3.56061  0.12017  3.46248     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
     23   2.92882  3.56061  0.12017  3.46248     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
     24   3.06176  2.57805  3.11093  0.18307     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
     25   2.92882  3.56061  0.12017  3.46248     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
     26   0.14547  3.35358  2.78456  3.25273     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
     27   0.14547  3.35358  2.78456  3.25273     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
     28   3.40234  0.13394  3.45309  2.80654     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
     29   3.40234  0.13394  3.45309  2.80654     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
     30   3.06176  2.57805  3.11093  0.18307     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
     31   2.92882  3.56061  0.12017  3.46248     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
     32   3.40234  0.13394  3.45309  2.80654     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
     33   2.92882  3.56061  0.12017  3.46248     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
     34   2.92882  3.56061  0.12017  3.46248     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
     35   0.14547  3.35358  2.78456  3.25273     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
     36   2.92882  3.56061  0.12017  3.46248     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
     37   2.92882  3.56061  0.12017  3.46248     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
     38   2.92882  3.56061  0.12017  3.46248     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
     39   0.14547  3.35358  2.78456  3.25273     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
     40   3.06176  2.57805  3.11093  0.18307     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
     41   3.40234  0.13394  3.45309  2.80654     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
     42   0.14547  3.35358  2.78456  3.25273     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
     43   3.06176  2.57805  3.11093  0.18307     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
     44   3.06176  2.57805  3.11093  0.18307     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03745  3.99645  3.99645  1.46634  0.26236  1.09861  0.40547
     45   0.26665  2.85378  2.54466  2.32346     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01890  3.97790        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  1_SSU_Amoebozoa_1_SSU_end_oned_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 22:26:33 2012
NSEQ  14
EFFN  3.305176
CKSUM 2249141990
STATS LOCAL MSV       -8.0858  0.71933
STATS LOCAL VITERBI   -7.7838  0.71933
STATS LOCAL FORWARD   -4.1454  0.71933
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.27019  1.70539  1.30694  1.32098
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  0.00000        *
      1   0.14264  3.37464  2.79827  3.27577      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
      2   2.94360  3.58205  0.11779  3.48613      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
      3   3.08294  2.59153  3.13131  0.17959      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
      4   3.42663  0.13098  3.47636  2.82428      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
      5   2.94360  3.58205  0.11779  3.48613      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
      6   3.08294  2.59153  3.13131  0.17959      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
      7   0.14264  3.37464  2.79827  3.27577      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
      8   0.14264  3.37464  2.79827  3.27577      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
      9   3.42663  0.13098  3.47636  2.82428      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     10   0.14264  3.37464  2.79827  3.27577     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     11   0.14264  3.37464  2.79827  3.27577     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     12   2.94360  3.58205  0.11779  3.48613     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     13   2.94360  3.58205  0.11779  3.48613     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     14   3.08294  2.59153  3.13131  0.17959     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     15   0.14264  3.37464  2.79827  3.27577     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     16   0.14264  3.37464  2.79827  3.27577     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     17   2.89328  2.16089  2.94852  0.25236     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     18   3.42663  0.13098  3.47636  2.82428     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     19   2.94360  3.58205  0.11779  3.48613     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     20   3.08294  2.59153  3.13131  0.17959     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     21   0.14264  3.37464  2.79827  3.27577     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     22   2.94360  3.58205  0.11779  3.48613     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     23   2.94360  3.58205  0.11779  3.48613     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     24   3.08294  2.59153  3.13131  0.17959     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     25   2.94360  3.58205  0.11779  3.48613     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     26   0.14264  3.37464  2.79827  3.27577     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     27   0.14264  3.37464  2.79827  3.27577     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     28   3.42663  0.13098  3.47636  2.82428     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     29   3.42663  0.13098  3.47636  2.82428     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     30   3.08294  2.59153  3.13131  0.17959     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     31   2.94360  3.58205  0.11779  3.48613     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     32   3.42663  0.13098  3.47636  2.82428     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     33   2.94360  3.58205  0.11779  3.48613     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     34   3.08294  2.59153  3.13131  0.17959     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     35   3.08294  2.59153  3.13131  0.17959     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     36   3.08294  2.59153  3.13131  0.17959     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     37   2.94360  3.58205  0.11779  3.48613     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     38   2.94360  3.58205  0.11779  3.48613     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     39   0.14264  3.37464  2.79827  3.27577     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     40   3.08294  2.59153  3.13131  0.17959     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     41   3.42663  0.13098  3.47636  2.82428     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     42   0.14264  3.37464  2.79827  3.27577     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     43   3.08294  2.59153  3.13131  0.17959     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     44   3.08294  2.59153  3.13131  0.17959     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03701  4.00827  4.00827  1.46634  0.26236  1.09861  0.40547
     45   0.14264  3.37464  2.79827  3.27577     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01867  3.98994        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  1_SSU_Amoebozoa_1_SSU_end_threea_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 22:27:31 2012
NSEQ  16
EFFN  3.175781
CKSUM 572948826
STATS LOCAL MSV       -8.0370  0.71932
STATS LOCAL VITERBI   -7.7288  0.71932
STATS LOCAL FORWARD   -4.0261  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.15962  1.55332  1.24723  1.67370
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  0.00000        *
      1   0.14843  3.33206  2.77050  3.22920      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.07696  3.98449  2.89186  1.46634  0.26236  1.09861  0.40547
      2   2.86397  3.46759  0.13121  3.36018      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03939  3.94692  3.94692  1.46634  0.26236  0.51322  0.91271
      3   3.04021  2.56430  3.09020  0.18668      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
      4   3.37748  0.13704  3.42926  2.78832      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
      5   2.91360  3.53861  0.12268  3.43825      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
      6   3.04021  2.56430  3.09020  0.18668      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
      7   0.14843  3.33206  2.77050  3.22920      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
      8   0.14843  3.33206  2.77050  3.22920      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
      9   3.37748  0.13704  3.42926  2.78832      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     10   0.14843  3.33206  2.77050  3.22920     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     11   0.14843  3.33206  2.77050  3.22920     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     12   2.91360  3.53861  0.12268  3.43825     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     13   2.91360  3.53861  0.12268  3.43825     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     14   3.04021  2.56430  3.09020  0.18668     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     15   0.14843  3.33206  2.77050  3.22920     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     16   3.04021  2.56430  3.09020  0.18668     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     17   3.37748  0.13704  3.42926  2.78832     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     18   3.37748  0.13704  3.42926  2.78832     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     19   2.91360  3.53861  0.12268  3.43825     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     20   3.04021  2.56430  3.09020  0.18668     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     21   0.14843  3.33206  2.77050  3.22920     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     22   2.91360  3.53861  0.12268  3.43825     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     23   2.91360  3.53861  0.12268  3.43825     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     24   3.04021  2.56430  3.09020  0.18668     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     25   2.91360  3.53861  0.12268  3.43825     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     26   0.14843  3.33206  2.77050  3.22920     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     27   0.14843  3.33206  2.77050  3.22920     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     28   3.37748  0.13704  3.42926  2.78832     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     29   3.37748  0.13704  3.42926  2.78832     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     30   3.04021  2.56430  3.09020  0.18668     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     31   2.91360  3.53861  0.12268  3.43825     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     32   3.37748  0.13704  3.42926  2.78832     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     33   0.14843  3.33206  2.77050  3.22920     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     34   2.91360  3.53861  0.12268  3.43825     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     35   0.14843  3.33206  2.77050  3.22920     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     36   0.14843  3.33206  2.77050  3.22920     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     37   2.91360  3.53861  0.12268  3.43825     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     38   2.91360  3.53861  0.12268  3.43825     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     39   0.14843  3.33206  2.77050  3.22920     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     40   3.04021  2.56430  3.09020  0.18668     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     41   3.37748  0.13704  3.42926  2.78832     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     42   0.14843  3.33206  2.77050  3.22920     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     43   0.14843  3.33206  2.77050  3.22920     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     44   2.91360  3.53861  0.12268  3.43825     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03791  3.98449  3.98449  1.46634  0.26236  1.09861  0.40547
     45   3.37748  0.13704  3.42926  2.78832     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01914  3.96571        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  1_SSU_Amoebozoa_1_SSU_end_threeb_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 22:27:37 2012
NSEQ  3
EFFN  3.000000
CKSUM 479671279
STATS LOCAL MSV       -7.9995  0.72030
STATS LOCAL VITERBI   -7.7571  0.72030
STATS LOCAL FORWARD   -4.0868  0.72030
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.33393  1.61825  1.24860  1.38068
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  0.00000        *
      1   0.15719  3.27118  2.73043  3.16274      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      2   2.86982  3.47591  0.13017  3.36931      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      3   2.97980  2.52563  3.03204  0.19727      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      4   3.30705  0.14631  3.36166  2.73626      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      5   2.86982  3.47591  0.13017  3.36931      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      6   2.97980  2.52563  3.03204  0.19727      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      7   0.15719  3.27118  2.73043  3.16274      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      8   0.15719  3.27118  2.73043  3.16274      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
      9   3.30705  0.14631  3.36166  2.73626      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     10   0.15719  3.27118  2.73043  3.16274     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     11   0.15719  3.27118  2.73043  3.16274     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     12   2.86982  3.47591  0.13017  3.36931     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     13   2.86982  3.47591  0.13017  3.36931     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     14   2.97980  2.52563  3.03204  0.19727     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     15   0.15719  3.27118  2.73043  3.16274     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     16   2.97980  2.52563  3.03204  0.19727     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     17   3.30705  0.14631  3.36166  2.73626     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     18   3.30705  0.14631  3.36166  2.73626     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     19   2.86982  3.47591  0.13017  3.36931     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     20   2.97980  2.52563  3.03204  0.19727     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     21   0.15719  3.27118  2.73043  3.16274     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     22   2.86982  3.47591  0.13017  3.36931     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     23   2.86982  3.47591  0.13017  3.36931     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     24   2.97980  2.52563  3.03204  0.19727     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     25   2.86982  3.47591  0.13017  3.36931     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     26   0.15719  3.27118  2.73043  3.16274     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     27   0.15719  3.27118  2.73043  3.16274     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     28   3.30705  0.14631  3.36166  2.73626     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     29   3.30705  0.14631  3.36166  2.73626     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     30   2.97980  2.52563  3.03204  0.19727     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     31   2.86982  3.47591  0.13017  3.36931     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     32   3.30705  0.14631  3.36166  2.73626     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     33   2.86982  3.47591  0.13017  3.36931     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     34   2.86982  3.47591  0.13017  3.36931     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     35   0.15719  3.27118  2.73043  3.16274     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     36   2.97980  2.52563  3.03204  0.19727     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     37   2.86982  3.47591  0.13017  3.36931     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     38   2.86982  3.47591  0.13017  3.36931     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     39   0.15719  3.27118  2.73043  3.16274     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     40   2.97980  2.52563  3.03204  0.19727     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     41   3.30705  0.14631  3.36166  2.73626     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     42   0.15719  3.27118  2.73043  3.16274     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     43   2.97980  2.52563  3.03204  0.19727     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     44   2.97980  2.52563  3.03204  0.19727     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03922  3.95124  3.95124  1.46634  0.26236  1.09861  0.40547
     45   2.97980  2.52563  3.03204  0.19727     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01980  3.93183        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  1_SSU_Amoebozoa_1_SSU_end_threec_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 22:27:43 2012
NSEQ  5
EFFN  3.247070
CKSUM 3545515269
STATS LOCAL MSV       -8.0553  0.71931
STATS LOCAL VITERBI   -7.6960  0.71931
STATS LOCAL FORWARD   -4.1589  0.71931
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.33344  1.62254  1.24775  1.37878
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  0.00000        *
      1   0.14518  3.35575  2.78597  3.25510      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
      2   2.93035  3.56282  0.11992  3.46492      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
      3   3.06393  2.57943  3.11303  0.18271      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
      4   3.40484  0.13363  3.45549  2.80837      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
      5   2.93035  3.56282  0.11992  3.46492      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
      6   3.06393  2.57943  3.11303  0.18271      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
      7   0.14518  3.35575  2.78597  3.25510      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
      8   0.14518  3.35575  2.78597  3.25510      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
      9   3.40484  0.13363  3.45549  2.80837      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     10   0.14518  3.35575  2.78597  3.25510     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     11   0.14518  3.35575  2.78597  3.25510     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     12   2.93035  3.56282  0.11992  3.46492     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     13   2.93035  3.56282  0.11992  3.46492     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     14   3.06393  2.57943  3.11303  0.18271     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     15   0.14518  3.35575  2.78597  3.25510     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     16   3.06393  2.57943  3.11303  0.18271     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     17   3.40484  0.13363  3.45549  2.80837     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     18   3.40484  0.13363  3.45549  2.80837     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     19   2.93035  3.56282  0.11992  3.46492     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     20   3.06393  2.57943  3.11303  0.18271     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     21   0.14518  3.35575  2.78597  3.25510     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     22   2.93035  3.56282  0.11992  3.46492     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     23   2.93035  3.56282  0.11992  3.46492     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     24   3.06393  2.57943  3.11303  0.18271     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     25   2.93035  3.56282  0.11992  3.46492     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     26   0.14518  3.35575  2.78597  3.25510     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     27   0.14518  3.35575  2.78597  3.25510     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     28   3.40484  0.13363  3.45549  2.80837     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     29   3.40484  0.13363  3.45549  2.80837     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     30   3.06393  2.57943  3.11303  0.18271     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     31   2.93035  3.56282  0.11992  3.46492     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     32   3.40484  0.13363  3.45549  2.80837     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     33   2.93035  3.56282  0.11992  3.46492     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     34   2.93035  3.56282  0.11992  3.46492     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     35   0.14518  3.35575  2.78597  3.25510     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     36   3.06393  2.57943  3.11303  0.18271     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     37   2.93035  3.56282  0.11992  3.46492     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     38   2.93035  3.56282  0.11992  3.46492     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     39   0.14518  3.35575  2.78597  3.25510     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     40   3.06393  2.57943  3.11303  0.18271     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     41   3.40484  0.13363  3.45549  2.80837     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     42   0.14518  3.35575  2.78597  3.25510     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     43   3.06393  2.57943  3.11303  0.18271     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     44   3.06393  2.57943  3.11303  0.18271     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03741  3.99766  3.99766  1.46634  0.26236  1.09861  0.40547
     45   3.06393  2.57943  3.11303  0.18271     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01888  3.97913        *  1.46634  0.26236  0.00000        *
//
HMMER3/b [3.0 | March 2010]
NAME  1_SSU_Amoebozoa_1_SSU_end_two_long
LENG  45
ALPH  DNA
RF    no
CS    no
MAP   yes
DATE  Fri Jan 20 22:27:08 2012
NSEQ  71
EFFN  3.375793
CKSUM 1469632365
STATS LOCAL MSV       -7.4121  0.71932
STATS LOCAL VITERBI   -7.6514  0.71932
STATS LOCAL FORWARD   -4.1516  0.71932
HMM          A        C        G        T   
            m->m     m->i     m->d     i->m     i->i     d->m     d->d
  COMPO   1.32611  1.62738  1.24904  1.38123
          1.38629  1.38629  1.38629  1.38629
          0.03653  4.02102  4.02102  1.46634  0.26236  0.00000        *
      1   0.13969  3.39712  2.81286  3.30038      1 - -
          1.38629  1.38629  1.38629  1.38629
          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
      2   2.95925  3.60483  0.11531  3.51128      2 - -
          1.38629  1.38629  1.38629  1.38629
          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
      3   3.10566  2.60598  3.15316  0.17595      3 - -
          1.38629  1.38629  1.38629  1.38629
          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
      4   3.45252  0.12792  3.50115  2.84311      4 - -
          1.38629  1.38629  1.38629  1.38629
          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
      5   2.95925  3.60483  0.11531  3.51128      5 - -
          1.38629  1.38629  1.38629  1.38629
          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
      6   3.10566  2.60598  3.15316  0.17595      6 - -
          1.38629  1.38629  1.38629  1.38629
          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
      7   0.13969  3.39712  2.81286  3.30038      7 - -
          1.38629  1.38629  1.38629  1.38629
          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
      8   0.13969  3.39712  2.81286  3.30038      8 - -
          1.38629  1.38629  1.38629  1.38629
          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
      9   3.45252  0.12792  3.50115  2.84311      9 - -
          1.38629  1.38629  1.38629  1.38629
          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
     10   0.13969  3.39712  2.81286  3.30038     10 - -
          1.38629  1.38629  1.38629  1.38629
          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
     11   0.13969  3.39712  2.81286  3.30038     11 - -
          1.38629  1.38629  1.38629  1.38629
          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
     12   2.95925  3.60483  0.11531  3.51128     12 - -
          1.38629  1.38629  1.38629  1.38629
          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
     13   2.95925  3.60483  0.11531  3.51128     13 - -
          1.38629  1.38629  1.38629  1.38629
          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
     14   3.10566  2.60598  3.15316  0.17595     14 - -
          1.38629  1.38629  1.38629  1.38629
          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
     15   0.13969  3.39712  2.81286  3.30038     15 - -
          1.38629  1.38629  1.38629  1.38629
          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
     16   3.10566  2.60598  3.15316  0.17595     16 - -
          1.38629  1.38629  1.38629  1.38629
          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
     17   3.45252  0.12792  3.50115  2.84311     17 - -
          1.38629  1.38629  1.38629  1.38629
          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
     18   2.95186  0.22451  2.63110  2.56592     18 - -
          1.38629  1.38629  1.38629  1.38629
          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
     19   2.95925  3.60483  0.11531  3.51128     19 - -
          1.38629  1.38629  1.38629  1.38629
          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
     20   3.10566  2.60598  3.15316  0.17595     20 - -
          1.38629  1.38629  1.38629  1.38629
          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
     21   0.13969  3.39712  2.81286  3.30038     21 - -
          1.38629  1.38629  1.38629  1.38629
          0.05378  4.02102  3.36902  1.46634  0.26236  1.09861  0.40547
     22   2.93878  3.57505  0.11856  3.47840     22 - -
          1.38629  1.38629  1.38629  1.38629
          0.03715  4.00439  4.00439  1.46634  0.26236  0.71393  0.67279
     23   2.95925  3.60483  0.11531  3.51128     23 - -
          1.38629  1.38629  1.38629  1.38629
          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
     24   3.10566  2.60598  3.15316  0.17595     24 - -
          1.38629  1.38629  1.38629  1.38629
          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
     25   2.95925  3.60483  0.11531  3.51128     25 - -
          1.38629  1.38629  1.38629  1.38629
          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
     26   0.13969  3.39712  2.81286  3.30038     26 - -
          1.38629  1.38629  1.38629  1.38629
          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
     27   0.13969  3.39712  2.81286  3.30038     27 - -
          1.38629  1.38629  1.38629  1.38629
          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
     28   3.45252  0.12792  3.50115  2.84311     28 - -
          1.38629  1.38629  1.38629  1.38629
          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
     29   3.45252  0.12792  3.50115  2.84311     29 - -
          1.38629  1.38629  1.38629  1.38629
          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
     30   3.10566  2.60598  3.15316  0.17595     30 - -
          1.38629  1.38629  1.38629  1.38629
          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
     31   2.95925  3.60483  0.11531  3.51128     31 - -
          1.38629  1.38629  1.38629  1.38629
          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
     32   3.45252  0.12792  3.50115  2.84311     32 - -
          1.38629  1.38629  1.38629  1.38629
          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
     33   2.71968  2.72902  0.19871  3.01523     33 - -
          1.38629  1.38629  1.38629  1.38629
          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
     34   2.95925  3.60483  0.11531  3.51128     34 - -
          1.38629  1.38629  1.38629  1.38629
          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
     35   0.13969  3.39712  2.81286  3.30038     35 - -
          1.38629  1.38629  1.38629  1.38629
          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
     36   3.10566  2.60598  3.15316  0.17595     36 - -
          1.38629  1.38629  1.38629  1.38629
          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
     37   2.95925  3.60483  0.11531  3.51128     37 - -
          1.38629  1.38629  1.38629  1.38629
          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
     38   2.95925  3.60483  0.11531  3.51128     38 - -
          1.38629  1.38629  1.38629  1.38629
          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
     39   0.13969  3.39712  2.81286  3.30038     39 - -
          1.38629  1.38629  1.38629  1.38629
          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
     40   3.10566  2.60598  3.15316  0.17595     40 - -
          1.38629  1.38629  1.38629  1.38629
          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
     41   3.45252  0.12792  3.50115  2.84311     41 - -
          1.38629  1.38629  1.38629  1.38629
          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
     42   0.13969  3.39712  2.81286  3.30038     42 - -
          1.38629  1.38629  1.38629  1.38629
          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
     43   3.10566  2.60598  3.15316  0.17595     43 - -
          1.38629  1.38629  1.38629  1.38629
          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
     44   3.10566  2.60598  3.15316  0.17595     44 - -
          1.38629  1.38629  1.38629  1.38629
          0.03653  4.02102  4.02102  1.46634  0.26236  1.09861  0.40547
     45   2.33315  2.44141  2.77551  0.28282     45 - -
          1.38629  1.38629  1.38629  1.38629
          0.01843  4.00292        *  1.46634  0.26236  0.00000        *
//