comparison ITSx_db/HMMs/Q.hmm @ 0:f82c70f54bd7 draft

Uploaded
author okorol
date Tue, 24 Mar 2015 12:02:48 -0400
parents
children
comparison
equal deleted inserted replaced
-1:000000000000 0:f82c70f54bd7
1 HMMER3/b [3.0 | March 2010]
2 NAME 3_End_Raphidophyceae_58S_end_one_long
3 LENG 45
4 ALPH DNA
5 RF no
6 CS no
7 MAP yes
8 DATE Thu Jan 19 22:28:09 2012
9 NSEQ 29
10 EFFN 3.345337
11 CKSUM 2540392139
12 STATS LOCAL MSV -8.0627 0.71933
13 STATS LOCAL VITERBI -7.5685 0.71933
14 STATS LOCAL FORWARD -3.8000 0.71933
15 HMM A C G T
16 m->m m->i m->d i->m i->i d->m d->d
17 COMPO 1.72491 1.59887 1.25392 1.09570
18 1.38629 1.38629 1.38629 1.38629
19 0.03673 4.01554 4.01554 1.46634 0.26236 0.00000 *
20 1 3.44143 0.12922 3.49054 2.83505 1 - -
21 1.38629 1.38629 1.38629 1.38629
22 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547
23 2 0.14094 3.38749 2.80662 3.28984 2 - -
24 1.38629 1.38629 1.38629 1.38629
25 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547
26 3 3.44143 0.12922 3.49054 2.83505 3 - -
27 1.38629 1.38629 1.38629 1.38629
28 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547
29 4 3.09591 2.59978 3.14378 0.17750 4 - -
30 1.38629 1.38629 1.38629 1.38629
31 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547
32 5 3.09591 2.59978 3.14378 0.17750 5 - -
33 1.38629 1.38629 1.38629 1.38629
34 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547
35 6 3.44143 0.12922 3.49054 2.83505 6 - -
36 1.38629 1.38629 1.38629 1.38629
37 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547
38 7 3.44143 0.12922 3.49054 2.83505 7 - -
39 1.38629 1.38629 1.38629 1.38629
40 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547
41 8 2.95256 3.59508 0.11636 3.50051 8 - -
42 1.38629 1.38629 1.38629 1.38629
43 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547
44 9 2.95256 3.59508 0.11636 3.50051 9 - -
45 1.38629 1.38629 1.38629 1.38629
46 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547
47 10 2.95256 3.59508 0.11636 3.50051 10 - -
48 1.38629 1.38629 1.38629 1.38629
49 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547
50 11 0.14094 3.38749 2.80662 3.28984 11 - -
51 1.38629 1.38629 1.38629 1.38629
52 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547
53 12 3.09591 2.59978 3.14378 0.17750 12 - -
54 1.38629 1.38629 1.38629 1.38629
55 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547
56 13 0.14094 3.38749 2.80662 3.28984 13 - -
57 1.38629 1.38629 1.38629 1.38629
58 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547
59 14 3.09591 2.59978 3.14378 0.17750 14 - -
60 1.38629 1.38629 1.38629 1.38629
61 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547
62 15 3.09591 2.59978 3.14378 0.17750 15 - -
63 1.38629 1.38629 1.38629 1.38629
64 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547
65 16 3.44143 0.12922 3.49054 2.83505 16 - -
66 1.38629 1.38629 1.38629 1.38629
67 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547
68 17 3.44143 0.12922 3.49054 2.83505 17 - -
69 1.38629 1.38629 1.38629 1.38629
70 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547
71 18 3.09591 2.59978 3.14378 0.17750 18 - -
72 1.38629 1.38629 1.38629 1.38629
73 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547
74 19 2.95256 3.59508 0.11636 3.50051 19 - -
75 1.38629 1.38629 1.38629 1.38629
76 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547
77 20 2.95256 3.59508 0.11636 3.50051 20 - -
78 1.38629 1.38629 1.38629 1.38629
79 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547
80 21 2.95256 3.59508 0.11636 3.50051 21 - -
81 1.38629 1.38629 1.38629 1.38629
82 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547
83 22 0.14094 3.38749 2.80662 3.28984 22 - -
84 1.38629 1.38629 1.38629 1.38629
85 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547
86 23 2.95256 3.59508 0.11636 3.50051 23 - -
87 1.38629 1.38629 1.38629 1.38629
88 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547
89 24 3.09591 2.59978 3.14378 0.17750 24 - -
90 1.38629 1.38629 1.38629 1.38629
91 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547
92 25 0.14094 3.38749 2.80662 3.28984 25 - -
93 1.38629 1.38629 1.38629 1.38629
94 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547
95 26 3.09591 2.59978 3.14378 0.17750 26 - -
96 1.38629 1.38629 1.38629 1.38629
97 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547
98 27 2.95256 3.59508 0.11636 3.50051 27 - -
99 1.38629 1.38629 1.38629 1.38629
100 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547
101 28 3.44143 0.12922 3.49054 2.83505 28 - -
102 1.38629 1.38629 1.38629 1.38629
103 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547
104 29 3.09591 2.59978 3.14378 0.17750 29 - -
105 1.38629 1.38629 1.38629 1.38629
106 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547
107 30 3.09591 2.59978 3.14378 0.17750 30 - -
108 1.38629 1.38629 1.38629 1.38629
109 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547
110 31 2.95256 3.59508 0.11636 3.50051 31 - -
111 1.38629 1.38629 1.38629 1.38629
112 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547
113 32 3.09591 2.59978 3.14378 0.17750 32 - -
114 1.38629 1.38629 1.38629 1.38629
115 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547
116 33 3.09591 2.59978 3.14378 0.17750 33 - -
117 1.38629 1.38629 1.38629 1.38629
118 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547
119 34 0.17548 3.26091 2.52535 3.15686 34 - -
120 1.38629 1.38629 1.38629 1.38629
121 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547
122 35 2.95256 3.59508 0.11636 3.50051 35 - -
123 1.38629 1.38629 1.38629 1.38629
124 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547
125 36 0.14094 3.38749 2.80662 3.28984 36 - -
126 1.38629 1.38629 1.38629 1.38629
127 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547
128 37 2.95256 3.59508 0.11636 3.50051 37 - -
129 1.38629 1.38629 1.38629 1.38629
130 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547
131 38 3.09591 2.59978 3.14378 0.17750 38 - -
132 1.38629 1.38629 1.38629 1.38629
133 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547
134 39 2.95256 3.59508 0.11636 3.50051 39 - -
135 1.38629 1.38629 1.38629 1.38629
136 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547
137 40 3.09591 2.59978 3.14378 0.17750 40 - -
138 1.38629 1.38629 1.38629 1.38629
139 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547
140 41 3.44143 0.12922 3.49054 2.83505 41 - -
141 1.38629 1.38629 1.38629 1.38629
142 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547
143 42 3.09591 2.59978 3.14378 0.17750 42 - -
144 1.38629 1.38629 1.38629 1.38629
145 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547
146 43 2.95256 3.59508 0.11636 3.50051 43 - -
147 1.38629 1.38629 1.38629 1.38629
148 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547
149 44 3.09591 2.59978 3.14378 0.17750 44 - -
150 1.38629 1.38629 1.38629 1.38629
151 0.03673 4.01554 4.01554 1.46634 0.26236 1.09861 0.40547
152 45 3.09591 2.59978 3.14378 0.17750 45 - -
153 1.38629 1.38629 1.38629 1.38629
154 0.01854 3.99734 * 1.46634 0.26236 0.00000 *
155 //
156 HMMER3/b [3.0 | March 2010]
157 NAME 3_End_Raphidophyceae_58S_end_three_long
158 LENG 45
159 ALPH DNA
160 RF no
161 CS no
162 MAP yes
163 DATE Thu Jan 19 22:28:25 2012
164 NSEQ 22
165 EFFN 3.348877
166 CKSUM 1842339946
167 STATS LOCAL MSV -7.9914 0.71933
168 STATS LOCAL VITERBI -7.6624 0.71933
169 STATS LOCAL FORWARD -3.8281 0.71933
170 HMM A C G T
171 m->m m->i m->d i->m i->i d->m d->d
172 COMPO 1.72163 1.59833 1.25283 1.09872
173 1.38629 1.38629 1.38629 1.38629
174 0.03671 4.01618 4.01618 1.46634 0.26236 0.00000 *
175 1 2.95334 3.59622 0.11624 3.50177 1 - -
176 1.38629 1.38629 1.38629 1.38629
177 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547
178 2 3.44273 0.12907 3.49178 2.83600 2 - -
179 1.38629 1.38629 1.38629 1.38629
180 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547
181 3 0.14080 3.38861 2.80735 3.29107 3 - -
182 1.38629 1.38629 1.38629 1.38629
183 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547
184 4 3.44273 0.12907 3.49178 2.83600 4 - -
185 1.38629 1.38629 1.38629 1.38629
186 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547
187 5 3.09705 2.60051 3.14488 0.17732 5 - -
188 1.38629 1.38629 1.38629 1.38629
189 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547
190 6 3.09705 2.60051 3.14488 0.17732 6 - -
191 1.38629 1.38629 1.38629 1.38629
192 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547
193 7 3.44273 0.12907 3.49178 2.83600 7 - -
194 1.38629 1.38629 1.38629 1.38629
195 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547
196 8 3.44273 0.12907 3.49178 2.83600 8 - -
197 1.38629 1.38629 1.38629 1.38629
198 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547
199 9 2.95334 3.59622 0.11624 3.50177 9 - -
200 1.38629 1.38629 1.38629 1.38629
201 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547
202 10 2.95334 3.59622 0.11624 3.50177 10 - -
203 1.38629 1.38629 1.38629 1.38629
204 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547
205 11 2.95334 3.59622 0.11624 3.50177 11 - -
206 1.38629 1.38629 1.38629 1.38629
207 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547
208 12 2.96194 2.28365 3.01466 0.22652 12 - -
209 1.38629 1.38629 1.38629 1.38629
210 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547
211 13 0.14080 3.38861 2.80735 3.29107 13 - -
212 1.38629 1.38629 1.38629 1.38629
213 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547
214 14 3.09705 2.60051 3.14488 0.17732 14 - -
215 1.38629 1.38629 1.38629 1.38629
216 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547
217 15 3.09705 2.60051 3.14488 0.17732 15 - -
218 1.38629 1.38629 1.38629 1.38629
219 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547
220 16 3.44273 0.12907 3.49178 2.83600 16 - -
221 1.38629 1.38629 1.38629 1.38629
222 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547
223 17 3.44273 0.12907 3.49178 2.83600 17 - -
224 1.38629 1.38629 1.38629 1.38629
225 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547
226 18 3.09705 2.60051 3.14488 0.17732 18 - -
227 1.38629 1.38629 1.38629 1.38629
228 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547
229 19 2.95334 3.59622 0.11624 3.50177 19 - -
230 1.38629 1.38629 1.38629 1.38629
231 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547
232 20 2.95334 3.59622 0.11624 3.50177 20 - -
233 1.38629 1.38629 1.38629 1.38629
234 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547
235 21 2.95334 3.59622 0.11624 3.50177 21 - -
236 1.38629 1.38629 1.38629 1.38629
237 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547
238 22 0.14080 3.38861 2.80735 3.29107 22 - -
239 1.38629 1.38629 1.38629 1.38629
240 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547
241 23 2.95334 3.59622 0.11624 3.50177 23 - -
242 1.38629 1.38629 1.38629 1.38629
243 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547
244 24 3.09705 2.60051 3.14488 0.17732 24 - -
245 1.38629 1.38629 1.38629 1.38629
246 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547
247 25 0.14080 3.38861 2.80735 3.29107 25 - -
248 1.38629 1.38629 1.38629 1.38629
249 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547
250 26 3.09705 2.60051 3.14488 0.17732 26 - -
251 1.38629 1.38629 1.38629 1.38629
252 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547
253 27 2.95334 3.59622 0.11624 3.50177 27 - -
254 1.38629 1.38629 1.38629 1.38629
255 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547
256 28 3.44273 0.12907 3.49178 2.83600 28 - -
257 1.38629 1.38629 1.38629 1.38629
258 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547
259 29 3.09705 2.60051 3.14488 0.17732 29 - -
260 1.38629 1.38629 1.38629 1.38629
261 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547
262 30 3.09705 2.60051 3.14488 0.17732 30 - -
263 1.38629 1.38629 1.38629 1.38629
264 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547
265 31 3.09705 2.60051 3.14488 0.17732 31 - -
266 1.38629 1.38629 1.38629 1.38629
267 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547
268 32 0.14080 3.38861 2.80735 3.29107 32 - -
269 1.38629 1.38629 1.38629 1.38629
270 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547
271 33 3.09705 2.60051 3.14488 0.17732 33 - -
272 1.38629 1.38629 1.38629 1.38629
273 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547
274 34 0.14080 3.38861 2.80735 3.29107 34 - -
275 1.38629 1.38629 1.38629 1.38629
276 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547
277 35 2.95334 3.59622 0.11624 3.50177 35 - -
278 1.38629 1.38629 1.38629 1.38629
279 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547
280 36 0.14080 3.38861 2.80735 3.29107 36 - -
281 1.38629 1.38629 1.38629 1.38629
282 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547
283 37 2.95334 3.59622 0.11624 3.50177 37 - -
284 1.38629 1.38629 1.38629 1.38629
285 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547
286 38 3.09705 2.60051 3.14488 0.17732 38 - -
287 1.38629 1.38629 1.38629 1.38629
288 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547
289 39 2.95334 3.59622 0.11624 3.50177 39 - -
290 1.38629 1.38629 1.38629 1.38629
291 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547
292 40 3.09705 2.60051 3.14488 0.17732 40 - -
293 1.38629 1.38629 1.38629 1.38629
294 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547
295 41 3.44273 0.12907 3.49178 2.83600 41 - -
296 1.38629 1.38629 1.38629 1.38629
297 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547
298 42 3.09705 2.60051 3.14488 0.17732 42 - -
299 1.38629 1.38629 1.38629 1.38629
300 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547
301 43 2.95334 3.59622 0.11624 3.50177 43 - -
302 1.38629 1.38629 1.38629 1.38629
303 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547
304 44 3.09705 2.60051 3.14488 0.17732 44 - -
305 1.38629 1.38629 1.38629 1.38629
306 0.03671 4.01618 4.01618 1.46634 0.26236 1.09861 0.40547
307 45 3.09705 2.60051 3.14488 0.17732 45 - -
308 1.38629 1.38629 1.38629 1.38629
309 0.01852 3.99799 * 1.46634 0.26236 0.00000 *
310 //
311 HMMER3/b [3.0 | March 2010]
312 NAME 3_End_Raphidophyceae_58S_end_two_long
313 LENG 45
314 ALPH DNA
315 RF no
316 CS no
317 MAP yes
318 DATE Thu Jan 19 22:28:17 2012
319 NSEQ 2
320 EFFN 2.000000
321 CKSUM 3536786290
322 STATS LOCAL MSV -7.4659 0.72801
323 STATS LOCAL VITERBI -8.3758 0.72801
324 STATS LOCAL FORWARD -3.4843 0.72801
325 HMM A C G T
326 m->m m->i m->d i->m i->i d->m d->d
327 COMPO 1.92192 1.27826 1.22095 1.27224
328 1.38629 1.38629 1.38629 1.38629
329 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
330 1 2.81865 0.23582 2.88868 2.35662 1 - -
331 1.38629 1.38629 1.38629 1.38629
332 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
333 2 2.53331 3.02441 0.20344 2.88069 2 - -
334 1.38629 1.38629 1.38629 1.38629
335 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
336 3 2.81865 0.23582 2.88868 2.35662 3 - -
337 1.38629 1.38629 1.38629 1.38629
338 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
339 4 2.57915 2.25909 2.64442 0.28946 4 - -
340 1.38629 1.38629 1.38629 1.38629
341 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
342 5 2.57915 2.25909 2.64442 0.28946 5 - -
343 1.38629 1.38629 1.38629 1.38629
344 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
345 6 2.81865 0.23582 2.88868 2.35662 6 - -
346 1.38629 1.38629 1.38629 1.38629
347 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
348 7 2.81865 0.23582 2.88868 2.35662 7 - -
349 1.38629 1.38629 1.38629 1.38629
350 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
351 8 2.53331 3.02441 0.20344 2.88069 8 - -
352 1.38629 1.38629 1.38629 1.38629
353 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
354 9 2.53331 3.02441 0.20344 2.88069 9 - -
355 1.38629 1.38629 1.38629 1.38629
356 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
357 10 2.53331 3.02441 0.20344 2.88069 10 - -
358 1.38629 1.38629 1.38629 1.38629
359 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
360 11 2.81865 0.23582 2.88868 2.35662 11 - -
361 1.38629 1.38629 1.38629 1.38629
362 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
363 12 0.23862 2.84929 2.43386 2.70756 12 - -
364 1.38629 1.38629 1.38629 1.38629
365 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
366 13 2.57915 2.25909 2.64442 0.28946 13 - -
367 1.38629 1.38629 1.38629 1.38629
368 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
369 14 2.81865 0.23582 2.88868 2.35662 14 - -
370 1.38629 1.38629 1.38629 1.38629
371 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
372 15 2.81865 0.23582 2.88868 2.35662 15 - -
373 1.38629 1.38629 1.38629 1.38629
374 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
375 16 2.81865 0.23582 2.88868 2.35662 16 - -
376 1.38629 1.38629 1.38629 1.38629
377 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
378 17 2.81865 0.23582 2.88868 2.35662 17 - -
379 1.38629 1.38629 1.38629 1.38629
380 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
381 18 2.57915 2.25909 2.64442 0.28946 18 - -
382 1.38629 1.38629 1.38629 1.38629
383 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
384 19 2.53331 3.02441 0.20344 2.88069 19 - -
385 1.38629 1.38629 1.38629 1.38629
386 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
387 20 2.53331 3.02441 0.20344 2.88069 20 - -
388 1.38629 1.38629 1.38629 1.38629
389 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
390 21 2.53331 3.02441 0.20344 2.88069 21 - -
391 1.38629 1.38629 1.38629 1.38629
392 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
393 22 0.23862 2.84929 2.43386 2.70756 22 - -
394 1.38629 1.38629 1.38629 1.38629
395 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
396 23 2.53331 3.02441 0.20344 2.88069 23 - -
397 1.38629 1.38629 1.38629 1.38629
398 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
399 24 2.81865 0.23582 2.88868 2.35662 24 - -
400 1.38629 1.38629 1.38629 1.38629
401 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
402 25 0.23862 2.84929 2.43386 2.70756 25 - -
403 1.38629 1.38629 1.38629 1.38629
404 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
405 26 2.57915 2.25909 2.64442 0.28946 26 - -
406 1.38629 1.38629 1.38629 1.38629
407 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
408 27 2.53331 3.02441 0.20344 2.88069 27 - -
409 1.38629 1.38629 1.38629 1.38629
410 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
411 28 2.81865 0.23582 2.88868 2.35662 28 - -
412 1.38629 1.38629 1.38629 1.38629
413 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
414 29 2.57915 2.25909 2.64442 0.28946 29 - -
415 1.38629 1.38629 1.38629 1.38629
416 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
417 30 2.57915 2.25909 2.64442 0.28946 30 - -
418 1.38629 1.38629 1.38629 1.38629
419 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
420 31 2.53331 3.02441 0.20344 2.88069 31 - -
421 1.38629 1.38629 1.38629 1.38629
422 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
423 32 2.57915 2.25909 2.64442 0.28946 32 - -
424 1.38629 1.38629 1.38629 1.38629
425 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
426 33 2.57915 2.25909 2.64442 0.28946 33 - -
427 1.38629 1.38629 1.38629 1.38629
428 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
429 34 2.57915 2.25909 2.64442 0.28946 34 - -
430 1.38629 1.38629 1.38629 1.38629
431 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
432 35 2.53331 3.02441 0.20344 2.88069 35 - -
433 1.38629 1.38629 1.38629 1.38629
434 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
435 36 0.23862 2.84929 2.43386 2.70756 36 - -
436 1.38629 1.38629 1.38629 1.38629
437 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
438 37 2.53331 3.02441 0.20344 2.88069 37 - -
439 1.38629 1.38629 1.38629 1.38629
440 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
441 38 2.57915 2.25909 2.64442 0.28946 38 - -
442 1.38629 1.38629 1.38629 1.38629
443 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
444 39 2.53331 3.02441 0.20344 2.88069 39 - -
445 1.38629 1.38629 1.38629 1.38629
446 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
447 40 2.57915 2.25909 2.64442 0.28946 40 - -
448 1.38629 1.38629 1.38629 1.38629
449 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
450 41 2.81865 0.23582 2.88868 2.35662 41 - -
451 1.38629 1.38629 1.38629 1.38629
452 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
453 42 2.81865 0.23582 2.88868 2.35662 42 - -
454 1.38629 1.38629 1.38629 1.38629
455 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
456 43 2.53331 3.02441 0.20344 2.88069 43 - -
457 1.38629 1.38629 1.38629 1.38629
458 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
459 44 2.57915 2.25909 2.64442 0.28946 44 - -
460 1.38629 1.38629 1.38629 1.38629
461 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
462 45 2.57915 2.25909 2.64442 0.28946 45 - -
463 1.38629 1.38629 1.38629 1.38629
464 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
465 //
466 HMMER3/b [3.0 | March 2010]
467 NAME 2_5.8_Raphidophyceae_58S_start_one_long
468 LENG 45
469 ALPH DNA
470 RF no
471 CS no
472 MAP yes
473 DATE Thu Jan 19 22:20:20 2012
474 NSEQ 55
475 EFFN 3.481140
476 CKSUM 1990027650
477 STATS LOCAL MSV -7.4661 0.71933
478 STATS LOCAL VITERBI -7.6976 0.71933
479 STATS LOCAL FORWARD -4.3165 0.71933
480 HMM A C G T
481 m->m m->i m->d i->m i->i d->m d->d
482 COMPO 1.41421 1.31471 1.35031 1.47329
483 1.38629 1.38629 1.38629 1.38629
484 0.03584 4.03974 4.03974 1.46634 0.26236 0.00000 *
485 1 3.48996 0.12363 3.53697 2.87020 1 - -
486 1.38629 1.38629 1.38629 1.38629
487 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547
488 2 2.98169 3.63765 0.11184 3.54756 2 - -
489 1.38629 1.38629 1.38629 1.38629
490 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547
491 3 0.13554 3.42968 2.83393 3.33606 3 - -
492 1.38629 1.38629 1.38629 1.38629
493 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547
494 4 3.48996 0.12363 3.53697 2.87020 4 - -
495 1.38629 1.38629 1.38629 1.38629
496 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547
497 5 3.13877 2.62701 3.18500 0.17080 5 - -
498 1.38629 1.38629 1.38629 1.38629
499 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547
500 6 3.13877 2.62701 3.18500 0.17080 6 - -
501 1.38629 1.38629 1.38629 1.38629
502 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547
503 7 3.13877 2.62701 3.18500 0.17080 7 - -
504 1.38629 1.38629 1.38629 1.38629
505 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547
506 8 3.48996 0.12363 3.53697 2.87020 8 - -
507 1.38629 1.38629 1.38629 1.38629
508 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547
509 9 0.13554 3.42968 2.83393 3.33606 9 - -
510 1.38629 1.38629 1.38629 1.38629
511 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547
512 10 2.98169 3.63765 0.11184 3.54756 10 - -
513 1.38629 1.38629 1.38629 1.38629
514 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547
515 11 3.48996 0.12363 3.53697 2.87020 11 - -
516 1.38629 1.38629 1.38629 1.38629
517 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547
518 12 0.83378 2.54150 0.92669 2.39705 12 - -
519 1.38629 1.38629 1.38629 1.38629
520 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547
521 13 2.98169 3.63765 0.11184 3.54756 13 - -
522 1.38629 1.38629 1.38629 1.38629
523 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547
524 14 3.48996 0.12363 3.53697 2.87020 14 - -
525 1.38629 1.38629 1.38629 1.38629
526 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547
527 15 2.98169 3.63765 0.11184 3.54756 15 - -
528 1.38629 1.38629 1.38629 1.38629
529 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547
530 16 2.98169 3.63765 0.11184 3.54756 16 - -
531 1.38629 1.38629 1.38629 1.38629
532 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547
533 17 0.13554 3.42968 2.83393 3.33606 17 - -
534 1.38629 1.38629 1.38629 1.38629
535 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547
536 18 3.13877 2.62701 3.18500 0.17080 18 - -
537 1.38629 1.38629 1.38629 1.38629
538 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547
539 19 2.98169 3.63765 0.11184 3.54756 19 - -
540 1.38629 1.38629 1.38629 1.38629
541 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547
542 20 3.13877 2.62701 3.18500 0.17080 20 - -
543 1.38629 1.38629 1.38629 1.38629
544 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547
545 21 3.48996 0.12363 3.53697 2.87020 21 - -
546 1.38629 1.38629 1.38629 1.38629
547 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547
548 22 3.13877 2.62701 3.18500 0.17080 22 - -
549 1.38629 1.38629 1.38629 1.38629
550 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547
551 23 3.13877 2.62701 3.18500 0.17080 23 - -
552 1.38629 1.38629 1.38629 1.38629
553 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547
554 24 2.98169 3.63765 0.11184 3.54756 24 - -
555 1.38629 1.38629 1.38629 1.38629
556 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547
557 25 2.98169 3.63765 0.11184 3.54756 25 - -
558 1.38629 1.38629 1.38629 1.38629
559 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547
560 26 3.13877 2.62701 3.18500 0.17080 26 - -
561 1.38629 1.38629 1.38629 1.38629
562 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547
563 27 3.13877 2.62701 3.18500 0.17080 27 - -
564 1.38629 1.38629 1.38629 1.38629
565 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547
566 28 3.48996 0.12363 3.53697 2.87020 28 - -
567 1.38629 1.38629 1.38629 1.38629
568 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547
569 29 3.48996 0.12363 3.53697 2.87020 29 - -
570 1.38629 1.38629 1.38629 1.38629
571 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547
572 30 3.48996 0.12363 3.53697 2.87020 30 - -
573 1.38629 1.38629 1.38629 1.38629
574 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547
575 31 0.13554 3.42968 2.83393 3.33606 31 - -
576 1.38629 1.38629 1.38629 1.38629
577 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547
578 32 3.48996 0.12363 3.53697 2.87020 32 - -
579 1.38629 1.38629 1.38629 1.38629
580 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547
581 33 0.13554 3.42968 2.83393 3.33606 33 - -
582 1.38629 1.38629 1.38629 1.38629
583 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547
584 34 0.91891 2.17063 2.17690 0.98471 34 - -
585 1.38629 1.38629 1.38629 1.38629
586 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547
587 35 3.48996 0.12363 3.53697 2.87020 35 - -
588 1.38629 1.38629 1.38629 1.38629
589 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547
590 36 2.98169 3.63765 0.11184 3.54756 36 - -
591 1.38629 1.38629 1.38629 1.38629
592 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547
593 37 0.13554 3.42968 2.83393 3.33606 37 - -
594 1.38629 1.38629 1.38629 1.38629
595 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547
596 38 3.13877 2.62701 3.18500 0.17080 38 - -
597 1.38629 1.38629 1.38629 1.38629
598 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547
599 39 2.98169 3.63765 0.11184 3.54756 39 - -
600 1.38629 1.38629 1.38629 1.38629
601 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547
602 40 0.13554 3.42968 2.83393 3.33606 40 - -
603 1.38629 1.38629 1.38629 1.38629
604 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547
605 41 0.13554 3.42968 2.83393 3.33606 41 - -
606 1.38629 1.38629 1.38629 1.38629
607 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547
608 42 2.98169 3.63765 0.11184 3.54756 42 - -
609 1.38629 1.38629 1.38629 1.38629
610 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547
611 43 0.13554 3.42968 2.83393 3.33606 43 - -
612 1.38629 1.38629 1.38629 1.38629
613 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547
614 44 0.13554 3.42968 2.83393 3.33606 44 - -
615 1.38629 1.38629 1.38629 1.38629
616 0.03584 4.03974 4.03974 1.46634 0.26236 1.09861 0.40547
617 45 3.48996 0.12363 3.53697 2.87020 45 - -
618 1.38629 1.38629 1.38629 1.38629
619 0.01808 4.02198 * 1.46634 0.26236 0.00000 *
620 //
621 HMMER3/b [3.0 | March 2010]
622 NAME 2_5.8_Raphidophyceae_58S_start_two_long
623 LENG 45
624 ALPH DNA
625 RF no
626 CS no
627 MAP yes
628 DATE Sat Oct 8 23:41:06 2011
629 NSEQ 2
630 EFFN 2.000000
631 CKSUM 4228921988
632 STATS LOCAL MSV -7.5411 0.72814
633 STATS LOCAL VITERBI -8.1860 0.72814
634 STATS LOCAL FORWARD -3.8575 0.72814
635 HMM A C G T
636 m->m m->i m->d i->m i->i d->m d->d
637 COMPO 1.23782 1.40044 1.49697 1.42842
638 1.38629 1.38629 1.38629 1.38629
639 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 *
640 1 2.57915 2.25909 2.64442 0.28946 1 - -
641 1.38629 1.38629 1.38629 1.38629
642 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
643 2 0.23862 2.84929 2.43386 2.70756 2 - -
644 1.38629 1.38629 1.38629 1.38629
645 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
646 3 0.23862 2.84929 2.43386 2.70756 3 - -
647 1.38629 1.38629 1.38629 1.38629
648 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
649 4 2.81865 0.23582 2.88868 2.35662 4 - -
650 1.38629 1.38629 1.38629 1.38629
651 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
652 5 2.57915 2.25909 2.64442 0.28946 5 - -
653 1.38629 1.38629 1.38629 1.38629
654 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
655 6 2.57915 2.25909 2.64442 0.28946 6 - -
656 1.38629 1.38629 1.38629 1.38629
657 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
658 7 2.57915 2.25909 2.64442 0.28946 7 - -
659 1.38629 1.38629 1.38629 1.38629
660 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
661 8 2.81865 0.23582 2.88868 2.35662 8 - -
662 1.38629 1.38629 1.38629 1.38629
663 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
664 9 0.23862 2.84929 2.43386 2.70756 9 - -
665 1.38629 1.38629 1.38629 1.38629
666 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
667 10 2.53331 3.02441 0.20344 2.88069 10 - -
668 1.38629 1.38629 1.38629 1.38629
669 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
670 11 2.81865 0.23582 2.88868 2.35662 11 - -
671 1.38629 1.38629 1.38629 1.38629
672 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
673 12 0.23862 2.84929 2.43386 2.70756 12 - -
674 1.38629 1.38629 1.38629 1.38629
675 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
676 13 0.23862 2.84929 2.43386 2.70756 13 - -
677 1.38629 1.38629 1.38629 1.38629
678 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
679 14 2.57915 2.25909 2.64442 0.28946 14 - -
680 1.38629 1.38629 1.38629 1.38629
681 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
682 15 2.53331 3.02441 0.20344 2.88069 15 - -
683 1.38629 1.38629 1.38629 1.38629
684 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
685 16 2.53331 3.02441 0.20344 2.88069 16 - -
686 1.38629 1.38629 1.38629 1.38629
687 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
688 17 0.23862 2.84929 2.43386 2.70756 17 - -
689 1.38629 1.38629 1.38629 1.38629
690 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
691 18 2.57915 2.25909 2.64442 0.28946 18 - -
692 1.38629 1.38629 1.38629 1.38629
693 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
694 19 2.53331 3.02441 0.20344 2.88069 19 - -
695 1.38629 1.38629 1.38629 1.38629
696 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
697 20 2.57915 2.25909 2.64442 0.28946 20 - -
698 1.38629 1.38629 1.38629 1.38629
699 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
700 21 2.81865 0.23582 2.88868 2.35662 21 - -
701 1.38629 1.38629 1.38629 1.38629
702 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
703 22 2.57915 2.25909 2.64442 0.28946 22 - -
704 1.38629 1.38629 1.38629 1.38629
705 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
706 23 2.57915 2.25909 2.64442 0.28946 23 - -
707 1.38629 1.38629 1.38629 1.38629
708 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
709 24 2.53331 3.02441 0.20344 2.88069 24 - -
710 1.38629 1.38629 1.38629 1.38629
711 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
712 25 2.53331 3.02441 0.20344 2.88069 25 - -
713 1.38629 1.38629 1.38629 1.38629
714 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
715 26 2.81865 0.23582 2.88868 2.35662 26 - -
716 1.38629 1.38629 1.38629 1.38629
717 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
718 27 2.57915 2.25909 2.64442 0.28946 27 - -
719 1.38629 1.38629 1.38629 1.38629
720 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
721 28 2.81865 0.23582 2.88868 2.35662 28 - -
722 1.38629 1.38629 1.38629 1.38629
723 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
724 29 2.81865 0.23582 2.88868 2.35662 29 - -
725 1.38629 1.38629 1.38629 1.38629
726 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
727 30 2.81865 0.23582 2.88868 2.35662 30 - -
728 1.38629 1.38629 1.38629 1.38629
729 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
730 31 0.23862 2.84929 2.43386 2.70756 31 - -
731 1.38629 1.38629 1.38629 1.38629
732 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
733 32 2.81865 0.23582 2.88868 2.35662 32 - -
734 1.38629 1.38629 1.38629 1.38629
735 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
736 33 0.23862 2.84929 2.43386 2.70756 33 - -
737 1.38629 1.38629 1.38629 1.38629
738 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
739 34 0.23862 2.84929 2.43386 2.70756 34 - -
740 1.38629 1.38629 1.38629 1.38629
741 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
742 35 2.81865 0.23582 2.88868 2.35662 35 - -
743 1.38629 1.38629 1.38629 1.38629
744 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
745 36 2.53331 3.02441 0.20344 2.88069 36 - -
746 1.38629 1.38629 1.38629 1.38629
747 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
748 37 0.23862 2.84929 2.43386 2.70756 37 - -
749 1.38629 1.38629 1.38629 1.38629
750 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
751 38 2.57915 2.25909 2.64442 0.28946 38 - -
752 1.38629 1.38629 1.38629 1.38629
753 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
754 39 2.53331 3.02441 0.20344 2.88069 39 - -
755 1.38629 1.38629 1.38629 1.38629
756 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
757 40 0.23862 2.84929 2.43386 2.70756 40 - -
758 1.38629 1.38629 1.38629 1.38629
759 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
760 41 0.23862 2.84929 2.43386 2.70756 41 - -
761 1.38629 1.38629 1.38629 1.38629
762 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
763 42 2.53331 3.02441 0.20344 2.88069 42 - -
764 1.38629 1.38629 1.38629 1.38629
765 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
766 43 0.23862 2.84929 2.43386 2.70756 43 - -
767 1.38629 1.38629 1.38629 1.38629
768 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
769 44 0.23862 2.84929 2.43386 2.70756 44 - -
770 1.38629 1.38629 1.38629 1.38629
771 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547
772 45 2.81865 0.23582 2.88868 2.35662 45 - -
773 1.38629 1.38629 1.38629 1.38629
774 0.02469 3.71357 * 1.46634 0.26236 0.00000 *
775 //
776 HMMER3/b [3.0 | March 2010]
777 NAME 4_LSU_Raphidophyceae_4_LSU_start_long
778 LENG 45
779 ALPH DNA
780 RF no
781 CS no
782 MAP yes
783 DATE Sat Oct 8 23:57:11 2011
784 NSEQ 23
785 EFFN 3.293335
786 CKSUM 2676057667
787 STATS LOCAL MSV -8.1976 0.71932
788 STATS LOCAL VITERBI -7.6482 0.71932
789 STATS LOCAL FORWARD -3.7861 0.71932
790 HMM A C G T
791 m->m m->i m->d i->m i->i d->m d->d
792 COMPO 1.06153 1.46136 1.69261 1.43500
793 1.38629 1.38629 1.38629 1.38629
794 0.03709 4.00612 4.00612 1.46634 0.26236 0.00000 *
795 1 3.07909 2.58908 3.12761 0.18022 1 - -
796 1.38629 1.38629 1.38629 1.38629
797 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547
798 2 3.07909 2.58908 3.12761 0.18022 2 - -
799 1.38629 1.38629 1.38629 1.38629
800 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547
801 3 3.42223 0.13151 3.47214 2.82107 3 - -
802 1.38629 1.38629 1.38629 1.38629
803 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547
804 4 0.14315 3.37082 2.79579 3.27159 4 - -
805 1.38629 1.38629 1.38629 1.38629
806 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547
807 5 2.94093 3.57817 0.11821 3.48184 5 - -
808 1.38629 1.38629 1.38629 1.38629
809 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547
810 6 0.14315 3.37082 2.79579 3.27159 6 - -
811 1.38629 1.38629 1.38629 1.38629
812 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547
813 7 3.07909 2.58908 3.12761 0.18022 7 - -
814 1.38629 1.38629 1.38629 1.38629
815 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547
816 8 3.42223 0.13151 3.47214 2.82107 8 - -
817 1.38629 1.38629 1.38629 1.38629
818 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547
819 9 3.07909 2.58908 3.12761 0.18022 9 - -
820 1.38629 1.38629 1.38629 1.38629
821 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547
822 10 3.42223 0.13151 3.47214 2.82107 10 - -
823 1.38629 1.38629 1.38629 1.38629
824 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547
825 11 3.07909 2.58908 3.12761 0.18022 11 - -
826 1.38629 1.38629 1.38629 1.38629
827 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547
828 12 0.14315 3.37082 2.79579 3.27159 12 - -
829 1.38629 1.38629 1.38629 1.38629
830 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547
831 13 0.14315 3.37082 2.79579 3.27159 13 - -
832 1.38629 1.38629 1.38629 1.38629
833 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547
834 14 3.07909 2.58908 3.12761 0.18022 14 - -
835 1.38629 1.38629 1.38629 1.38629
836 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547
837 15 3.42223 0.13151 3.47214 2.82107 15 - -
838 1.38629 1.38629 1.38629 1.38629
839 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547
840 16 0.14315 3.37082 2.79579 3.27159 16 - -
841 1.38629 1.38629 1.38629 1.38629
842 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547
843 17 0.14315 3.37082 2.79579 3.27159 17 - -
844 1.38629 1.38629 1.38629 1.38629
845 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547
846 18 2.94093 3.57817 0.11821 3.48184 18 - -
847 1.38629 1.38629 1.38629 1.38629
848 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547
849 19 3.42223 0.13151 3.47214 2.82107 19 - -
850 1.38629 1.38629 1.38629 1.38629
851 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547
852 20 0.14315 3.37082 2.79579 3.27159 20 - -
853 1.38629 1.38629 1.38629 1.38629
854 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547
855 21 0.14315 3.37082 2.79579 3.27159 21 - -
856 1.38629 1.38629 1.38629 1.38629
857 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547
858 22 2.94093 3.57817 0.11821 3.48184 22 - -
859 1.38629 1.38629 1.38629 1.38629
860 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547
861 23 0.14315 3.37082 2.79579 3.27159 23 - -
862 1.38629 1.38629 1.38629 1.38629
863 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547
864 24 0.14315 3.37082 2.79579 3.27159 24 - -
865 1.38629 1.38629 1.38629 1.38629
866 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547
867 25 2.94093 3.57817 0.11821 3.48184 25 - -
868 1.38629 1.38629 1.38629 1.38629
869 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547
870 26 0.14315 3.37082 2.79579 3.27159 26 - -
871 1.38629 1.38629 1.38629 1.38629
872 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547
873 27 3.42223 0.13151 3.47214 2.82107 27 - -
874 1.38629 1.38629 1.38629 1.38629
875 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547
876 28 3.42223 0.13151 3.47214 2.82107 28 - -
877 1.38629 1.38629 1.38629 1.38629
878 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547
879 29 3.42223 0.13151 3.47214 2.82107 29 - -
880 1.38629 1.38629 1.38629 1.38629
881 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547
882 30 2.94093 3.57817 0.11821 3.48184 30 - -
883 1.38629 1.38629 1.38629 1.38629
884 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547
885 31 3.42223 0.13151 3.47214 2.82107 31 - -
886 1.38629 1.38629 1.38629 1.38629
887 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547
888 32 3.07909 2.58908 3.12761 0.18022 32 - -
889 1.38629 1.38629 1.38629 1.38629
890 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547
891 33 2.94093 3.57817 0.11821 3.48184 33 - -
892 1.38629 1.38629 1.38629 1.38629
893 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547
894 34 0.14315 3.37082 2.79579 3.27159 34 - -
895 1.38629 1.38629 1.38629 1.38629
896 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547
897 35 0.14315 3.37082 2.79579 3.27159 35 - -
898 1.38629 1.38629 1.38629 1.38629
899 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547
900 36 3.07909 2.58908 3.12761 0.18022 36 - -
901 1.38629 1.38629 1.38629 1.38629
902 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547
903 37 3.07909 2.58908 3.12761 0.18022 37 - -
904 1.38629 1.38629 1.38629 1.38629
905 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547
906 38 3.07909 2.58908 3.12761 0.18022 38 - -
907 1.38629 1.38629 1.38629 1.38629
908 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547
909 39 0.14315 3.37082 2.79579 3.27159 39 - -
910 1.38629 1.38629 1.38629 1.38629
911 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547
912 40 0.14315 3.37082 2.79579 3.27159 40 - -
913 1.38629 1.38629 1.38629 1.38629
914 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547
915 41 2.94093 3.57817 0.11821 3.48184 41 - -
916 1.38629 1.38629 1.38629 1.38629
917 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547
918 42 3.42223 0.13151 3.47214 2.82107 42 - -
919 1.38629 1.38629 1.38629 1.38629
920 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547
921 43 0.14315 3.37082 2.79579 3.27159 43 - -
922 1.38629 1.38629 1.38629 1.38629
923 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547
924 44 3.07909 2.58908 3.12761 0.18022 44 - -
925 1.38629 1.38629 1.38629 1.38629
926 0.03709 4.00612 4.00612 1.46634 0.26236 1.09861 0.40547
927 45 0.14315 3.37082 2.79579 3.27159 45 - -
928 1.38629 1.38629 1.38629 1.38629
929 0.01872 3.98775 * 1.46634 0.26236 0.00000 *
930 //
931 HMMER3/b [3.0 | March 2010]
932 NAME 1_SSU_Raphidophyceae_1_SSU_end_long
933 LENG 45
934 ALPH DNA
935 RF no
936 CS no
937 MAP yes
938 DATE Sat Oct 8 23:33:58 2011
939 NSEQ 4
940 EFFN 3.230469
941 CKSUM 805615287
942 STATS LOCAL MSV -8.0211 0.71931
943 STATS LOCAL VITERBI -7.6818 0.71931
944 STATS LOCAL FORWARD -4.1105 0.71931
945 HMM A C G T
946 m->m m->i m->d i->m i->i d->m d->d
947 COMPO 1.27186 1.62653 1.24657 1.44566
948 1.38629 1.38629 1.38629 1.38629
949 0.03752 3.99461 3.99461 1.46634 0.26236 0.00000 *
950 1 0.14592 3.35028 2.78241 3.24912 1 - -
951 1.38629 1.38629 1.38629 1.38629
952 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547
953 2 2.92650 3.55724 0.12055 3.45877 2 - -
954 1.38629 1.38629 1.38629 1.38629
955 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547
956 3 3.05845 2.57594 3.10775 0.18362 3 - -
957 1.38629 1.38629 1.38629 1.38629
958 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547
959 4 3.39853 0.13441 3.44944 2.80375 4 - -
960 1.38629 1.38629 1.38629 1.38629
961 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547
962 5 2.92650 3.55724 0.12055 3.45877 5 - -
963 1.38629 1.38629 1.38629 1.38629
964 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547
965 6 3.05845 2.57594 3.10775 0.18362 6 - -
966 1.38629 1.38629 1.38629 1.38629
967 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547
968 7 0.14592 3.35028 2.78241 3.24912 7 - -
969 1.38629 1.38629 1.38629 1.38629
970 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547
971 8 0.14592 3.35028 2.78241 3.24912 8 - -
972 1.38629 1.38629 1.38629 1.38629
973 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547
974 9 3.39853 0.13441 3.44944 2.80375 9 - -
975 1.38629 1.38629 1.38629 1.38629
976 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547
977 10 0.14592 3.35028 2.78241 3.24912 10 - -
978 1.38629 1.38629 1.38629 1.38629
979 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547
980 11 0.14592 3.35028 2.78241 3.24912 11 - -
981 1.38629 1.38629 1.38629 1.38629
982 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547
983 12 2.92650 3.55724 0.12055 3.45877 12 - -
984 1.38629 1.38629 1.38629 1.38629
985 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547
986 13 2.92650 3.55724 0.12055 3.45877 13 - -
987 1.38629 1.38629 1.38629 1.38629
988 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547
989 14 3.05845 2.57594 3.10775 0.18362 14 - -
990 1.38629 1.38629 1.38629 1.38629
991 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547
992 15 3.05845 2.57594 3.10775 0.18362 15 - -
993 1.38629 1.38629 1.38629 1.38629
994 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547
995 16 3.05845 2.57594 3.10775 0.18362 16 - -
996 1.38629 1.38629 1.38629 1.38629
997 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547
998 17 3.39853 0.13441 3.44944 2.80375 17 - -
999 1.38629 1.38629 1.38629 1.38629
1000 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547
1001 18 3.39853 0.13441 3.44944 2.80375 18 - -
1002 1.38629 1.38629 1.38629 1.38629
1003 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547
1004 19 2.92650 3.55724 0.12055 3.45877 19 - -
1005 1.38629 1.38629 1.38629 1.38629
1006 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547
1007 20 3.05845 2.57594 3.10775 0.18362 20 - -
1008 1.38629 1.38629 1.38629 1.38629
1009 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547
1010 21 0.14592 3.35028 2.78241 3.24912 21 - -
1011 1.38629 1.38629 1.38629 1.38629
1012 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547
1013 22 2.92650 3.55724 0.12055 3.45877 22 - -
1014 1.38629 1.38629 1.38629 1.38629
1015 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547
1016 23 2.92650 3.55724 0.12055 3.45877 23 - -
1017 1.38629 1.38629 1.38629 1.38629
1018 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547
1019 24 3.05845 2.57594 3.10775 0.18362 24 - -
1020 1.38629 1.38629 1.38629 1.38629
1021 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547
1022 25 2.92650 3.55724 0.12055 3.45877 25 - -
1023 1.38629 1.38629 1.38629 1.38629
1024 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547
1025 26 0.14592 3.35028 2.78241 3.24912 26 - -
1026 1.38629 1.38629 1.38629 1.38629
1027 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547
1028 27 0.14592 3.35028 2.78241 3.24912 27 - -
1029 1.38629 1.38629 1.38629 1.38629
1030 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547
1031 28 3.39853 0.13441 3.44944 2.80375 28 - -
1032 1.38629 1.38629 1.38629 1.38629
1033 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547
1034 29 3.39853 0.13441 3.44944 2.80375 29 - -
1035 1.38629 1.38629 1.38629 1.38629
1036 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547
1037 30 3.05845 2.57594 3.10775 0.18362 30 - -
1038 1.38629 1.38629 1.38629 1.38629
1039 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547
1040 31 2.92650 3.55724 0.12055 3.45877 31 - -
1041 1.38629 1.38629 1.38629 1.38629
1042 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547
1043 32 3.39853 0.13441 3.44944 2.80375 32 - -
1044 1.38629 1.38629 1.38629 1.38629
1045 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547
1046 33 2.92650 3.55724 0.12055 3.45877 33 - -
1047 1.38629 1.38629 1.38629 1.38629
1048 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547
1049 34 2.92650 3.55724 0.12055 3.45877 34 - -
1050 1.38629 1.38629 1.38629 1.38629
1051 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547
1052 35 0.14592 3.35028 2.78241 3.24912 35 - -
1053 1.38629 1.38629 1.38629 1.38629
1054 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547
1055 36 0.14592 3.35028 2.78241 3.24912 36 - -
1056 1.38629 1.38629 1.38629 1.38629
1057 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547
1058 37 2.92650 3.55724 0.12055 3.45877 37 - -
1059 1.38629 1.38629 1.38629 1.38629
1060 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547
1061 38 2.92650 3.55724 0.12055 3.45877 38 - -
1062 1.38629 1.38629 1.38629 1.38629
1063 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547
1064 39 0.14592 3.35028 2.78241 3.24912 39 - -
1065 1.38629 1.38629 1.38629 1.38629
1066 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547
1067 40 3.05845 2.57594 3.10775 0.18362 40 - -
1068 1.38629 1.38629 1.38629 1.38629
1069 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547
1070 41 3.39853 0.13441 3.44944 2.80375 41 - -
1071 1.38629 1.38629 1.38629 1.38629
1072 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547
1073 42 0.14592 3.35028 2.78241 3.24912 42 - -
1074 1.38629 1.38629 1.38629 1.38629
1075 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547
1076 43 3.05845 2.57594 3.10775 0.18362 43 - -
1077 1.38629 1.38629 1.38629 1.38629
1078 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547
1079 44 3.05845 2.57594 3.10775 0.18362 44 - -
1080 1.38629 1.38629 1.38629 1.38629
1081 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547
1082 45 0.14592 3.35028 2.78241 3.24912 45 - -
1083 1.38629 1.38629 1.38629 1.38629
1084 0.01894 3.97602 * 1.46634 0.26236 0.00000 *
1085 //