Mercurial > repos > okorol > itsx
diff ITSx_db/HMMs/P.hmm @ 0:f82c70f54bd7 draft
Uploaded
| author | okorol |
|---|---|
| date | Tue, 24 Mar 2015 12:02:48 -0400 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/ITSx_db/HMMs/P.hmm Tue Mar 24 12:02:48 2015 -0400 @@ -0,0 +1,1550 @@ +HMMER3/b [3.0 | March 2010] +NAME 3_End_Haptophyceae_58S_end_five_long +LENG 45 +ALPH DNA +RF no +CS no +MAP yes +DATE Thu Jan 19 21:11:03 2012 +NSEQ 2 +EFFN 2.000000 +CKSUM 2494581836 +STATS LOCAL MSV -7.5772 0.72779 +STATS LOCAL VITERBI -8.4466 0.72779 +STATS LOCAL FORWARD -3.4217 0.72779 +HMM A C G T + m->m m->i m->d i->m i->i d->m d->d + COMPO 1.83092 1.23370 1.22080 1.37229 + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * + 1 2.81865 0.23582 2.88868 2.35662 1 - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 2 2.53331 3.02441 0.20344 2.88069 2 - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 3 2.81865 0.23582 2.88868 2.35662 3 - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 4 2.57915 2.25909 2.64442 0.28946 4 - 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- + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 45 0.23862 2.84929 2.43386 2.70756 45 - - + 1.38629 1.38629 1.38629 1.38629 + 0.02469 3.71357 * 1.46634 0.26236 0.00000 * +// +HMMER3/b [3.0 | March 2010] +NAME 3_End_Haptophyceae_58S_end_four_long +LENG 45 +ALPH DNA +RF no +CS no +MAP yes +DATE Thu Jan 19 21:10:55 2012 +NSEQ 2 +EFFN 2.000000 +CKSUM 1644174705 +STATS LOCAL MSV -7.4746 0.72790 +STATS LOCAL VITERBI -8.3271 0.72790 +STATS LOCAL FORWARD -3.4806 0.72790 +HMM A C G T + m->m m->i m->d i->m i->i d->m d->d + COMPO 1.82891 1.28195 1.21975 1.32197 + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * + 1 2.81865 0.23582 2.88868 2.35662 1 - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 2 2.53331 3.02441 0.20344 2.88069 2 - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 3 2.81865 0.23582 2.88868 2.35662 3 - - + 1.38629 1.38629 1.38629 1.38629 + 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 + 4 2.57915 2.25909 2.64442 0.28946 4 - 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