Mercurial > repos > okorol > itsx
view ITSx_db/HMMs/D.hmm @ 8:88ea67da0d99 draft
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| author | okorol |
|---|---|
| date | Fri, 05 Jun 2015 11:27:39 -0400 |
| parents | f82c70f54bd7 |
| children |
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HMMER3/b [3.0 | March 2010] NAME 3_End_Amoebozoa_58S_end_four_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 23:03:49 2012 NSEQ 5 EFFN 3.198242 CKSUM 1352929219 STATS LOCAL MSV -8.1195 0.71934 STATS LOCAL VITERBI -7.8448 0.71934 STATS LOCAL FORWARD -3.8579 0.71934 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 2.36165 1.09112 1.20867 1.30453 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 0.00000 * 1 0.14739 3.33958 2.77542 3.23743 1 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 2 3.38618 0.13595 3.43760 2.79470 2 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 3 2.91894 3.54631 0.12180 3.44673 3 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 4 3.04773 2.56910 3.09744 0.18541 4 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 5 2.91894 3.54631 0.12180 3.44673 5 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 6 3.38618 0.13595 3.43760 2.79470 6 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 7 2.91894 3.54631 0.12180 3.44673 7 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 8 2.91894 3.54631 0.12180 3.44673 8 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 9 3.38618 0.13595 3.43760 2.79470 9 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 10 3.38618 0.13595 3.43760 2.79470 10 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 11 3.04773 2.56910 3.09744 0.18541 11 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 12 3.38618 0.13595 3.43760 2.79470 12 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 13 2.91894 3.54631 0.12180 3.44673 13 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 14 3.04773 2.56910 3.09744 0.18541 14 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 15 3.38618 0.13595 3.43760 2.79470 15 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 16 3.04773 2.56910 3.09744 0.18541 16 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 17 3.04773 2.56910 3.09744 0.18541 17 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 18 3.38618 0.13595 3.43760 2.79470 18 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 19 2.91894 3.54631 0.12180 3.44673 19 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 20 2.91894 3.54631 0.12180 3.44673 20 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 21 0.14739 3.33958 2.77542 3.23743 21 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 22 3.38618 0.13595 3.43760 2.79470 22 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 23 2.91894 3.54631 0.12180 3.44673 23 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 24 3.38618 0.13595 3.43760 2.79470 24 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 25 3.04773 2.56910 3.09744 0.18541 25 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 26 2.91894 3.54631 0.12180 3.44673 26 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 27 2.91894 3.54631 0.12180 3.44673 27 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 28 3.38618 0.13595 3.43760 2.79470 28 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 29 3.38618 0.13595 3.43760 2.79470 29 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 30 3.38618 0.13595 3.43760 2.79470 30 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 31 3.04773 2.56910 3.09744 0.18541 31 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 32 3.38618 0.13595 3.43760 2.79470 32 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 33 3.04773 2.56910 3.09744 0.18541 33 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 34 3.04773 2.56910 3.09744 0.18541 34 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 35 2.91894 3.54631 0.12180 3.44673 35 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 36 2.91894 3.54631 0.12180 3.44673 36 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 37 3.38618 0.13595 3.43760 2.79470 37 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 38 3.04773 2.56910 3.09744 0.18541 38 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 39 3.04773 2.56910 3.09744 0.18541 39 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 40 2.91894 3.54631 0.12180 3.44673 40 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 41 3.38618 0.13595 3.43760 2.79470 41 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 42 3.38618 0.13595 3.43760 2.79470 42 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 43 3.04773 2.56910 3.09744 0.18541 43 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 44 3.04773 2.56910 3.09744 0.18541 44 - - 1.38629 1.38629 1.38629 1.38629 0.03775 3.98866 3.98866 1.46634 0.26236 1.09861 0.40547 45 2.91894 3.54631 0.12180 3.44673 45 - - 1.38629 1.38629 1.38629 1.38629 0.01905 3.96996 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Amoebozoa_58S_end_one_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 23:03:22 2012 NSEQ 2 EFFN 2.000000 CKSUM 2956303962 STATS LOCAL MSV -7.6683 0.72805 STATS LOCAL VITERBI -8.2257 0.72805 STATS LOCAL FORWARD -3.2732 0.72805 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.92481 1.13424 1.33224 1.31474 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.81865 0.23582 2.88868 2.35662 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 0.23862 2.84929 2.43386 2.70756 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.23862 2.84929 2.43386 2.70756 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.57915 2.25909 2.64442 0.28946 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.53331 3.02441 0.20344 2.88069 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.81865 0.23582 2.88868 2.35662 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.53331 3.02441 0.20344 2.88069 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.53331 3.02441 0.20344 2.88069 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.81865 0.23582 2.88868 2.35662 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.81865 0.23582 2.88868 2.35662 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.57915 2.25909 2.64442 0.28946 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.57915 2.25909 2.64442 0.28946 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.53331 3.02441 0.20344 2.88069 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.81865 0.23582 2.88868 2.35662 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.81865 0.23582 2.88868 2.35662 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.57915 2.25909 2.64442 0.28946 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.81865 0.23582 2.88868 2.35662 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.53331 3.02441 0.20344 2.88069 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 0.23862 2.84929 2.43386 2.70756 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.81865 0.23582 2.88868 2.35662 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 0.23862 2.84929 2.43386 2.70756 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.57915 2.25909 2.64442 0.28946 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.53331 3.02441 0.20344 2.88069 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.81865 0.23582 2.88868 2.35662 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.81865 0.23582 2.88868 2.35662 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.57915 2.25909 2.64442 0.28946 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.53331 3.02441 0.20344 2.88069 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.53331 3.02441 0.20344 2.88069 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.57915 2.25909 2.64442 0.28946 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.57915 2.25909 2.64442 0.28946 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.53331 3.02441 0.20344 2.88069 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.81865 0.23582 2.88868 2.35662 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.57915 2.25909 2.64442 0.28946 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.53331 3.02441 0.20344 2.88069 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Amoebozoa_58S_end_three_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 23:03:40 2012 NSEQ 3 EFFN 3.000000 CKSUM 3482197706 STATS LOCAL MSV -7.9368 0.72097 STATS LOCAL VITERBI -7.9470 0.72097 STATS LOCAL FORWARD -3.8220 0.72097 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 2.16502 1.08740 1.26141 1.32838 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 3.30705 0.14631 3.36166 2.73626 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 2.86982 3.47591 0.13017 3.36931 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 0.15719 3.27118 2.73043 3.16274 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 2.97980 2.52563 3.03204 0.19727 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 2.86982 3.47591 0.13017 3.36931 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 3.30705 0.14631 3.36166 2.73626 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 2.86982 3.47591 0.13017 3.36931 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 0.15719 3.27118 2.73043 3.16274 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 3.30705 0.14631 3.36166 2.73626 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 3.30705 0.14631 3.36166 2.73626 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 2.97980 2.52563 3.03204 0.19727 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 2.97980 2.52563 3.03204 0.19727 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 2.86982 3.47591 0.13017 3.36931 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 3.30705 0.14631 3.36166 2.73626 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 3.30705 0.14631 3.36166 2.73626 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 2.42796 0.63000 2.50086 1.21343 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 2.97980 2.52563 3.03204 0.19727 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 3.30705 0.14631 3.36166 2.73626 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 2.86982 3.47591 0.13017 3.36931 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 2.86982 3.47591 0.13017 3.36931 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 2.86982 3.47591 0.13017 3.36931 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 3.30705 0.14631 3.36166 2.73626 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 0.15719 3.27118 2.73043 3.16274 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 3.30705 0.14631 3.36166 2.73626 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 2.97980 2.52563 3.03204 0.19727 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 2.86982 3.47591 0.13017 3.36931 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 2.86982 3.47591 0.13017 3.36931 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 2.97980 2.52563 3.03204 0.19727 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 3.30705 0.14631 3.36166 2.73626 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 3.30705 0.14631 3.36166 2.73626 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 3.30705 0.14631 3.36166 2.73626 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 3.30705 0.14631 3.36166 2.73626 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 2.97980 2.52563 3.03204 0.19727 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 2.42796 0.63000 2.50086 1.21343 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 2.86982 3.47591 0.13017 3.36931 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 2.86982 3.47591 0.13017 3.36931 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 2.97980 2.52563 3.03204 0.19727 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 2.97980 2.52563 3.03204 0.19727 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 2.97980 2.52563 3.03204 0.19727 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 2.86982 3.47591 0.13017 3.36931 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 3.30705 0.14631 3.36166 2.73626 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 3.30705 0.14631 3.36166 2.73626 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 2.97980 2.52563 3.03204 0.19727 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 2.97980 2.52563 3.03204 0.19727 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 2.86982 3.47591 0.13017 3.36931 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Amoebozoa_58S_end_two_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 23:03:29 2012 NSEQ 3 EFFN 3.000000 CKSUM 3221230878 STATS LOCAL MSV -8.1908 0.72028 STATS LOCAL VITERBI -7.8625 0.72028 STATS LOCAL FORWARD -4.0676 0.72028 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 2.17869 1.14382 1.26619 1.25069 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 3.30705 0.14631 3.36166 2.73626 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 2.86982 3.47591 0.13017 3.36931 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 0.15719 3.27118 2.73043 3.16274 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 2.97980 2.52563 3.03204 0.19727 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 2.86982 3.47591 0.13017 3.36931 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 3.30705 0.14631 3.36166 2.73626 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 2.86982 3.47591 0.13017 3.36931 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 2.86982 3.47591 0.13017 3.36931 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 3.30705 0.14631 3.36166 2.73626 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 3.30705 0.14631 3.36166 2.73626 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 2.97980 2.52563 3.03204 0.19727 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 2.97980 2.52563 3.03204 0.19727 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 2.86982 3.47591 0.13017 3.36931 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 3.30705 0.14631 3.36166 2.73626 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 2.97980 2.52563 3.03204 0.19727 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 2.97980 2.52563 3.03204 0.19727 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 2.97980 2.52563 3.03204 0.19727 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 3.30705 0.14631 3.36166 2.73626 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 2.86982 3.47591 0.13017 3.36931 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 0.15719 3.27118 2.73043 3.16274 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 2.86982 3.47591 0.13017 3.36931 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 3.30705 0.14631 3.36166 2.73626 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 0.15719 3.27118 2.73043 3.16274 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 3.30705 0.14631 3.36166 2.73626 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 2.97980 2.52563 3.03204 0.19727 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 2.86982 3.47591 0.13017 3.36931 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 2.86982 3.47591 0.13017 3.36931 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 3.30705 0.14631 3.36166 2.73626 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 3.30705 0.14631 3.36166 2.73626 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 3.30705 0.14631 3.36166 2.73626 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 3.30705 0.14631 3.36166 2.73626 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 3.30705 0.14631 3.36166 2.73626 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 2.97980 2.52563 3.03204 0.19727 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 2.97980 2.52563 3.03204 0.19727 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 2.86982 3.47591 0.13017 3.36931 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 2.86982 3.47591 0.13017 3.36931 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 2.97980 2.52563 3.03204 0.19727 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 2.97980 2.52563 3.03204 0.19727 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 2.97980 2.52563 3.03204 0.19727 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 2.86982 3.47591 0.13017 3.36931 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 3.30705 0.14631 3.36166 2.73626 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 3.30705 0.14631 3.36166 2.73626 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 2.97980 2.52563 3.03204 0.19727 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 2.97980 2.52563 3.03204 0.19727 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 2.86982 3.47591 0.13017 3.36931 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Amoebozoa_58S_start_five_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 22:47:41 2012 NSEQ 5 EFFN 3.266602 CKSUM 3193284995 STATS LOCAL MSV -8.0914 0.71931 STATS LOCAL VITERBI -7.6850 0.71931 STATS LOCAL FORWARD -4.3591 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.55227 1.31654 1.38656 1.30845 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 0.00000 * 1 3.41221 0.13273 3.46255 2.81376 1 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 2 0.14431 3.36214 2.79014 3.26209 2 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 3 0.14431 3.36214 2.79014 3.26209 3 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 4 3.41221 0.13273 3.46255 2.81376 4 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 5 3.07035 2.58352 3.11920 0.18165 5 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 6 3.07035 2.58352 3.11920 0.18165 6 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 7 3.07035 2.58352 3.11920 0.18165 7 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 8 0.14431 3.36214 2.79014 3.26209 8 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 9 3.41221 0.13273 3.46255 2.81376 9 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 10 3.41221 0.13273 3.46255 2.81376 10 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 11 0.14431 3.36214 2.79014 3.26209 11 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 12 3.41221 0.13273 3.46255 2.81376 12 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 13 3.41221 0.13273 3.46255 2.81376 13 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 14 2.93484 3.56933 0.11920 3.47210 14 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 15 3.07035 2.58352 3.11920 0.18165 15 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 16 3.07035 2.58352 3.11920 0.18165 16 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 17 0.14431 3.36214 2.79014 3.26209 17 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 18 2.93484 3.56933 0.11920 3.47210 18 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 19 2.93484 3.56933 0.11920 3.47210 19 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 20 3.41221 0.13273 3.46255 2.81376 20 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 21 2.93484 3.56933 0.11920 3.47210 21 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 22 0.14431 3.36214 2.79014 3.26209 22 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 23 3.07035 2.58352 3.11920 0.18165 23 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 24 2.93484 3.56933 0.11920 3.47210 24 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 25 2.93484 3.56933 0.11920 3.47210 25 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 26 0.14431 3.36214 2.79014 3.26209 26 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 27 3.07035 2.58352 3.11920 0.18165 27 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 28 3.07035 2.58352 3.11920 0.18165 28 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 29 2.93484 3.56933 0.11920 3.47210 29 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 30 3.07035 2.58352 3.11920 0.18165 30 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 31 3.07035 2.58352 3.11920 0.18165 31 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 32 0.14431 3.36214 2.79014 3.26209 32 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 33 2.93484 3.56933 0.11920 3.47210 33 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 34 2.93484 3.56933 0.11920 3.47210 34 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 35 3.07035 2.58352 3.11920 0.18165 35 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 36 0.14431 3.36214 2.79014 3.26209 36 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 37 3.41221 0.13273 3.46255 2.81376 37 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 38 3.41221 0.13273 3.46255 2.81376 38 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 39 3.41221 0.13273 3.46255 2.81376 39 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 40 2.93484 3.56933 0.11920 3.47210 40 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 41 3.41221 0.13273 3.46255 2.81376 41 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 42 3.07035 2.58352 3.11920 0.18165 42 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 43 3.07035 2.58352 3.11920 0.18165 43 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 44 3.41221 0.13273 3.46255 2.81376 44 - - 1.38629 1.38629 1.38629 1.38629 0.03727 4.00124 4.00124 1.46634 0.26236 1.09861 0.40547 45 2.93484 3.56933 0.11920 3.47210 45 - - 1.38629 1.38629 1.38629 1.38629 0.01881 3.98278 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Amoebozoa_58S_start_four_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 22:47:33 2012 NSEQ 3 EFFN 3.000000 CKSUM 3037931376 STATS LOCAL MSV -8.1113 0.72021 STATS LOCAL VITERBI -7.5925 0.72021 STATS LOCAL FORWARD -4.1062 0.72021 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.55125 1.20479 1.38724 1.43339 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 3.30705 0.14631 3.36166 2.73626 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 0.15719 3.27118 2.73043 3.16274 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 3.30705 0.14631 3.36166 2.73626 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 2.97980 2.52563 3.03204 0.19727 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 3.30705 0.14631 3.36166 2.73626 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 0.15719 3.27118 2.73043 3.16274 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 2.97980 2.52563 3.03204 0.19727 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 0.15719 3.27118 2.73043 3.16274 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 3.30705 0.14631 3.36166 2.73626 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 3.30705 0.14631 3.36166 2.73626 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 0.15719 3.27118 2.73043 3.16274 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 3.30705 0.14631 3.36166 2.73626 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 3.30705 0.14631 3.36166 2.73626 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 2.86982 3.47591 0.13017 3.36931 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 2.97980 2.52563 3.03204 0.19727 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 2.97980 2.52563 3.03204 0.19727 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 0.15719 3.27118 2.73043 3.16274 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 2.86982 3.47591 0.13017 3.36931 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 2.86982 3.47591 0.13017 3.36931 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 3.30705 0.14631 3.36166 2.73626 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 2.86982 3.47591 0.13017 3.36931 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 0.15719 3.27118 2.73043 3.16274 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 2.97980 2.52563 3.03204 0.19727 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 2.86982 3.47591 0.13017 3.36931 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 2.86982 3.47591 0.13017 3.36931 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 0.15719 3.27118 2.73043 3.16274 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 2.97980 2.52563 3.03204 0.19727 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 2.97980 2.52563 3.03204 0.19727 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 2.86982 3.47591 0.13017 3.36931 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 3.30705 0.14631 3.36166 2.73626 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 2.97980 2.52563 3.03204 0.19727 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 0.15719 3.27118 2.73043 3.16274 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 2.86982 3.47591 0.13017 3.36931 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 2.86982 3.47591 0.13017 3.36931 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 2.97980 2.52563 3.03204 0.19727 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 0.15719 3.27118 2.73043 3.16274 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 3.30705 0.14631 3.36166 2.73626 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 3.30705 0.14631 3.36166 2.73626 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 3.30705 0.14631 3.36166 2.73626 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 2.86982 3.47591 0.13017 3.36931 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 3.30705 0.14631 3.36166 2.73626 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 2.97980 2.52563 3.03204 0.19727 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 2.97980 2.52563 3.03204 0.19727 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 3.30705 0.14631 3.36166 2.73626 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 2.86982 3.47591 0.13017 3.36931 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Amoebozoa_58S_start_one_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 22:47:04 2012 NSEQ 2 EFFN 2.000000 CKSUM 3357680575 STATS LOCAL MSV -7.5301 0.72805 STATS LOCAL VITERBI -8.1447 0.72805 STATS LOCAL FORWARD -3.6436 0.72805 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.52137 1.28488 1.38085 1.37225 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 0.23862 2.84929 2.43386 2.70756 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.81865 0.23582 2.88868 2.35662 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.23862 2.84929 2.43386 2.70756 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.57915 2.25909 2.64442 0.28946 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.57915 2.25909 2.64442 0.28946 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.81865 0.23582 2.88868 2.35662 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.57915 2.25909 2.64442 0.28946 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 0.23862 2.84929 2.43386 2.70756 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.81865 0.23582 2.88868 2.35662 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.81865 0.23582 2.88868 2.35662 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.23862 2.84929 2.43386 2.70756 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.81865 0.23582 2.88868 2.35662 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.81865 0.23582 2.88868 2.35662 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.53331 3.02441 0.20344 2.88069 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.57915 2.25909 2.64442 0.28946 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.57915 2.25909 2.64442 0.28946 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 0.23862 2.84929 2.43386 2.70756 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.53331 3.02441 0.20344 2.88069 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.81865 0.23582 2.88868 2.35662 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.23862 2.84929 2.43386 2.70756 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.57915 2.25909 2.64442 0.28946 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.53331 3.02441 0.20344 2.88069 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.53331 3.02441 0.20344 2.88069 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.23862 2.84929 2.43386 2.70756 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.57915 2.25909 2.64442 0.28946 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.57915 2.25909 2.64442 0.28946 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.53331 3.02441 0.20344 2.88069 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.81865 0.23582 2.88868 2.35662 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.57915 2.25909 2.64442 0.28946 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 0.23862 2.84929 2.43386 2.70756 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.53331 3.02441 0.20344 2.88069 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.53331 3.02441 0.20344 2.88069 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.57915 2.25909 2.64442 0.28946 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.81865 0.23582 2.88868 2.35662 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.81865 0.23582 2.88868 2.35662 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.81865 0.23582 2.88868 2.35662 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.53331 3.02441 0.20344 2.88069 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.57915 2.25909 2.64442 0.28946 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.57915 2.25909 2.64442 0.28946 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.81865 0.23582 2.88868 2.35662 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.53331 3.02441 0.20344 2.88069 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Amoebozoa_58S_start_three_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 22:47:24 2012 NSEQ 2 EFFN 2.000000 CKSUM 993253840 STATS LOCAL MSV -7.5156 0.72805 STATS LOCAL VITERBI -8.1384 0.72805 STATS LOCAL FORWARD -3.5209 0.72805 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.52247 1.28387 1.38089 1.37236 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.81865 0.23582 2.88868 2.35662 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 0.23862 2.84929 2.43386 2.70756 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.23862 2.84929 2.43386 2.70756 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.57915 2.25909 2.64442 0.28946 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.81865 0.23582 2.88868 2.35662 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.57915 2.25909 2.64442 0.28946 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.57915 2.25909 2.64442 0.28946 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 0.23862 2.84929 2.43386 2.70756 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.81865 0.23582 2.88868 2.35662 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.81865 0.23582 2.88868 2.35662 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.23862 2.84929 2.43386 2.70756 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.81865 0.23582 2.88868 2.35662 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.81865 0.23582 2.88868 2.35662 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.53331 3.02441 0.20344 2.88069 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.57915 2.25909 2.64442 0.28946 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.57915 2.25909 2.64442 0.28946 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 0.23862 2.84929 2.43386 2.70756 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.53331 3.02441 0.20344 2.88069 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.81865 0.23582 2.88868 2.35662 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.23862 2.84929 2.43386 2.70756 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.57915 2.25909 2.64442 0.28946 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.53331 3.02441 0.20344 2.88069 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.53331 3.02441 0.20344 2.88069 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.23862 2.84929 2.43386 2.70756 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.57915 2.25909 2.64442 0.28946 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.57915 2.25909 2.64442 0.28946 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.53331 3.02441 0.20344 2.88069 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.81865 0.23582 2.88868 2.35662 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.57915 2.25909 2.64442 0.28946 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 0.23862 2.84929 2.43386 2.70756 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.53331 3.02441 0.20344 2.88069 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.53331 3.02441 0.20344 2.88069 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.57915 2.25909 2.64442 0.28946 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.81865 0.23582 2.88868 2.35662 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.81865 0.23582 2.88868 2.35662 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.81865 0.23582 2.88868 2.35662 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.53331 3.02441 0.20344 2.88069 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.57915 2.25909 2.64442 0.28946 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.57915 2.25909 2.64442 0.28946 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.81865 0.23582 2.88868 2.35662 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.53331 3.02441 0.20344 2.88069 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Amoebozoa_58S_start_two_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 22:47:15 2012 NSEQ 4 EFFN 3.175781 CKSUM 253078905 STATS LOCAL MSV -8.1442 0.71933 STATS LOCAL VITERBI -7.5796 0.71933 STATS LOCAL FORWARD -4.2294 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.47959 1.15119 1.38788 1.57791 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 0.00000 * 1 3.37748 0.13704 3.42926 2.78832 1 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 2 0.14843 3.33206 2.77050 3.22920 2 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 3 3.37748 0.13704 3.42926 2.78832 3 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 4 3.37748 0.13704 3.42926 2.78832 4 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 5 3.37748 0.13704 3.42926 2.78832 5 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 6 0.14843 3.33206 2.77050 3.22920 6 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 7 3.04021 2.56430 3.09020 0.18668 7 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 8 0.14843 3.33206 2.77050 3.22920 8 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 9 3.37748 0.13704 3.42926 2.78832 9 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 10 3.37748 0.13704 3.42926 2.78832 10 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 11 0.14843 3.33206 2.77050 3.22920 11 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 12 3.37748 0.13704 3.42926 2.78832 12 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 13 3.37748 0.13704 3.42926 2.78832 13 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 14 2.91360 3.53861 0.12268 3.43825 14 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 15 3.04021 2.56430 3.09020 0.18668 15 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 16 0.14843 3.33206 2.77050 3.22920 16 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 17 0.14843 3.33206 2.77050 3.22920 17 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 18 2.91360 3.53861 0.12268 3.43825 18 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 19 2.91360 3.53861 0.12268 3.43825 19 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 20 3.37748 0.13704 3.42926 2.78832 20 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 21 2.91360 3.53861 0.12268 3.43825 21 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 22 0.14843 3.33206 2.77050 3.22920 22 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 23 3.04021 2.56430 3.09020 0.18668 23 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 24 2.91360 3.53861 0.12268 3.43825 24 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 25 2.91360 3.53861 0.12268 3.43825 25 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 26 0.14843 3.33206 2.77050 3.22920 26 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 27 3.04021 2.56430 3.09020 0.18668 27 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 28 3.04021 2.56430 3.09020 0.18668 28 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 29 2.91360 3.53861 0.12268 3.43825 29 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 30 3.37748 0.13704 3.42926 2.78832 30 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 31 3.04021 2.56430 3.09020 0.18668 31 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 32 0.14843 3.33206 2.77050 3.22920 32 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 33 2.91360 3.53861 0.12268 3.43825 33 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 34 2.91360 3.53861 0.12268 3.43825 34 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 35 3.04021 2.56430 3.09020 0.18668 35 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 36 0.14843 3.33206 2.77050 3.22920 36 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 37 3.37748 0.13704 3.42926 2.78832 37 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 38 3.37748 0.13704 3.42926 2.78832 38 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 39 3.37748 0.13704 3.42926 2.78832 39 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 40 2.91360 3.53861 0.12268 3.43825 40 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 41 3.37748 0.13704 3.42926 2.78832 41 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 42 3.04021 2.56430 3.09020 0.18668 42 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 43 3.04021 2.56430 3.09020 0.18668 43 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 44 3.37748 0.13704 3.42926 2.78832 44 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 45 2.91360 3.53861 0.12268 3.43825 45 - - 1.38629 1.38629 1.38629 1.38629 0.01914 3.96571 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Amoebozoa_4_LSU_start_onea_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 23:25:49 2012 NSEQ 51 EFFN 3.408508 CKSUM 3712596225 STATS LOCAL MSV -7.7739 0.71932 STATS LOCAL VITERBI -7.6712 0.71932 STATS LOCAL FORWARD -4.0000 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 0.96530 1.36587 1.68894 1.71893 1.38629 1.38629 1.38629 1.38629 0.03631 4.02687 4.02687 1.46634 0.26236 0.00000 * 1 2.68706 3.32674 0.16517 3.03111 1 - - 1.38629 1.38629 1.38629 1.38629 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547 2 3.46430 0.12655 3.51242 2.85165 2 - - 1.38629 1.38629 1.38629 1.38629 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547 3 0.16058 3.32313 2.62437 3.22332 3 - - 1.38629 1.38629 1.38629 1.38629 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547 4 0.13837 3.40735 2.81949 3.31159 4 - - 1.38629 1.38629 1.38629 1.38629 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547 5 2.96633 3.61517 0.11420 3.52270 5 - - 1.38629 1.38629 1.38629 1.38629 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547 6 0.13837 3.40735 2.81949 3.31159 6 - - 1.38629 1.38629 1.38629 1.38629 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547 7 3.46430 0.12655 3.51242 2.85165 7 - - 1.38629 1.38629 1.38629 1.38629 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547 8 3.46430 0.12655 3.51242 2.85165 8 - - 1.38629 1.38629 1.38629 1.38629 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547 9 3.11604 2.61257 3.16314 0.17432 9 - - 1.38629 1.38629 1.38629 1.38629 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547 10 3.46430 0.12655 3.51242 2.85165 10 - - 1.38629 1.38629 1.38629 1.38629 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547 11 0.13837 3.40735 2.81949 3.31159 11 - - 1.38629 1.38629 1.38629 1.38629 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547 12 0.13837 3.40735 2.81949 3.31159 12 - - 1.38629 1.38629 1.38629 1.38629 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547 13 0.13837 3.40735 2.81949 3.31159 13 - - 1.38629 1.38629 1.38629 1.38629 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547 14 3.11604 2.61257 3.16314 0.17432 14 - - 1.38629 1.38629 1.38629 1.38629 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547 15 3.46430 0.12655 3.51242 2.85165 15 - - 1.38629 1.38629 1.38629 1.38629 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547 16 0.13837 3.40735 2.81949 3.31159 16 - - 1.38629 1.38629 1.38629 1.38629 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547 17 0.13837 3.40735 2.81949 3.31159 17 - - 1.38629 1.38629 1.38629 1.38629 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547 18 0.17671 3.20419 2.73061 2.87869 18 - - 1.38629 1.38629 1.38629 1.38629 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547 19 3.34985 0.15124 3.40150 2.63187 19 - - 1.38629 1.38629 1.38629 1.38629 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547 20 0.13837 3.40735 2.81949 3.31159 20 - - 1.38629 1.38629 1.38629 1.38629 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547 21 0.13837 3.40735 2.81949 3.31159 21 - - 1.38629 1.38629 1.38629 1.38629 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547 22 2.96633 3.61517 0.11420 3.52270 22 - - 1.38629 1.38629 1.38629 1.38629 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547 23 2.96633 3.61517 0.11420 3.52270 23 - - 1.38629 1.38629 1.38629 1.38629 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547 24 0.13837 3.40735 2.81949 3.31159 24 - - 1.38629 1.38629 1.38629 1.38629 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547 25 3.11604 2.61257 3.16314 0.17432 25 - - 1.38629 1.38629 1.38629 1.38629 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547 26 0.13837 3.40735 2.81949 3.31159 26 - - 1.38629 1.38629 1.38629 1.38629 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547 27 3.46430 0.12655 3.51242 2.85165 27 - - 1.38629 1.38629 1.38629 1.38629 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547 28 3.46430 0.12655 3.51242 2.85165 28 - - 1.38629 1.38629 1.38629 1.38629 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547 29 3.46430 0.12655 3.51242 2.85165 29 - - 1.38629 1.38629 1.38629 1.38629 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547 30 2.96633 3.61517 0.11420 3.52270 30 - - 1.38629 1.38629 1.38629 1.38629 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547 31 3.46430 0.12655 3.51242 2.85165 31 - - 1.38629 1.38629 1.38629 1.38629 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547 32 3.11604 2.61257 3.16314 0.17432 32 - - 1.38629 1.38629 1.38629 1.38629 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547 33 2.96633 3.61517 0.11420 3.52270 33 - - 1.38629 1.38629 1.38629 1.38629 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547 34 0.13837 3.40735 2.81949 3.31159 34 - - 1.38629 1.38629 1.38629 1.38629 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547 35 0.13837 3.40735 2.81949 3.31159 35 - - 1.38629 1.38629 1.38629 1.38629 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547 36 2.44645 0.73953 2.51879 1.03422 36 - - 1.38629 1.38629 1.38629 1.38629 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547 37 3.11604 2.61257 3.16314 0.17432 37 - - 1.38629 1.38629 1.38629 1.38629 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547 38 3.11604 2.61257 3.16314 0.17432 38 - - 1.38629 1.38629 1.38629 1.38629 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547 39 0.13837 3.40735 2.81949 3.31159 39 - - 1.38629 1.38629 1.38629 1.38629 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547 40 0.13837 3.40735 2.81949 3.31159 40 - - 1.38629 1.38629 1.38629 1.38629 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547 41 2.96633 3.61517 0.11420 3.52270 41 - - 1.38629 1.38629 1.38629 1.38629 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547 42 3.46430 0.12655 3.51242 2.85165 42 - - 1.38629 1.38629 1.38629 1.38629 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547 43 0.13837 3.40735 2.81949 3.31159 43 - - 1.38629 1.38629 1.38629 1.38629 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547 44 3.11604 2.61257 3.16314 0.17432 44 - - 1.38629 1.38629 1.38629 1.38629 0.03631 4.02687 4.02687 1.46634 0.26236 1.09861 0.40547 45 0.13837 3.40735 2.81949 3.31159 45 - - 1.38629 1.38629 1.38629 1.38629 0.01832 4.00888 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Amoebozoa_4_LSU_start_oneb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 23:25:57 2012 NSEQ 6 EFFN 3.559570 CKSUM 4179308964 STATS LOCAL MSV -7.6411 0.71932 STATS LOCAL VITERBI -7.6553 0.71932 STATS LOCAL FORWARD -3.8849 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.09739 1.36145 1.63014 1.54147 1.38629 1.38629 1.38629 1.38629 0.03534 4.05345 4.05345 1.46634 0.26236 0.00000 * 1 2.09189 1.01591 0.96609 2.01061 1 - - 1.38629 1.38629 1.38629 1.38629 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547 2 0.13263 3.45319 2.84909 3.36185 2 - - 1.38629 1.38629 1.38629 1.38629 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547 3 3.16284 2.64227 3.20813 0.16716 3 - - 1.38629 1.38629 1.38629 1.38629 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547 4 3.51693 0.12064 3.56276 2.88963 4 - - 1.38629 1.38629 1.38629 1.38629 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547 5 2.99774 3.66122 0.10943 3.57364 5 - - 1.38629 1.38629 1.38629 1.38629 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547 6 0.13263 3.45319 2.84909 3.36185 6 - - 1.38629 1.38629 1.38629 1.38629 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547 7 3.51693 0.12064 3.56276 2.88963 7 - - 1.38629 1.38629 1.38629 1.38629 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547 8 3.51693 0.12064 3.56276 2.88963 8 - - 1.38629 1.38629 1.38629 1.38629 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547 9 3.16284 2.64227 3.20813 0.16716 9 - - 1.38629 1.38629 1.38629 1.38629 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547 10 3.51693 0.12064 3.56276 2.88963 10 - - 1.38629 1.38629 1.38629 1.38629 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547 11 0.13263 3.45319 2.84909 3.36185 11 - - 1.38629 1.38629 1.38629 1.38629 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547 12 0.13263 3.45319 2.84909 3.36185 12 - - 1.38629 1.38629 1.38629 1.38629 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547 13 0.13263 3.45319 2.84909 3.36185 13 - - 1.38629 1.38629 1.38629 1.38629 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547 14 3.16284 2.64227 3.20813 0.16716 14 - - 1.38629 1.38629 1.38629 1.38629 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547 15 3.51693 0.12064 3.56276 2.88963 15 - - 1.38629 1.38629 1.38629 1.38629 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547 16 0.13263 3.45319 2.84909 3.36185 16 - - 1.38629 1.38629 1.38629 1.38629 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547 17 0.13263 3.45319 2.84909 3.36185 17 - - 1.38629 1.38629 1.38629 1.38629 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547 18 2.99774 3.66122 0.10943 3.57364 18 - - 1.38629 1.38629 1.38629 1.38629 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547 19 3.16284 2.64227 3.20813 0.16716 19 - - 1.38629 1.38629 1.38629 1.38629 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547 20 2.99774 3.66122 0.10943 3.57364 20 - - 1.38629 1.38629 1.38629 1.38629 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547 21 0.13263 3.45319 2.84909 3.36185 21 - - 1.38629 1.38629 1.38629 1.38629 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547 22 2.99774 3.66122 0.10943 3.57364 22 - - 1.38629 1.38629 1.38629 1.38629 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547 23 0.13263 3.45319 2.84909 3.36185 23 - - 1.38629 1.38629 1.38629 1.38629 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547 24 2.12338 2.17434 0.99832 0.92082 24 - - 1.38629 1.38629 1.38629 1.38629 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547 25 3.16284 2.64227 3.20813 0.16716 25 - - 1.38629 1.38629 1.38629 1.38629 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547 26 0.13263 3.45319 2.84909 3.36185 26 - - 1.38629 1.38629 1.38629 1.38629 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547 27 3.51693 0.12064 3.56276 2.88963 27 - - 1.38629 1.38629 1.38629 1.38629 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547 28 3.51693 0.12064 3.56276 2.88963 28 - - 1.38629 1.38629 1.38629 1.38629 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547 29 3.51693 0.12064 3.56276 2.88963 29 - - 1.38629 1.38629 1.38629 1.38629 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547 30 2.99774 3.66122 0.10943 3.57364 30 - - 1.38629 1.38629 1.38629 1.38629 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547 31 3.51693 0.12064 3.56276 2.88963 31 - - 1.38629 1.38629 1.38629 1.38629 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547 32 3.16284 2.64227 3.20813 0.16716 32 - - 1.38629 1.38629 1.38629 1.38629 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547 33 2.99774 3.66122 0.10943 3.57364 33 - - 1.38629 1.38629 1.38629 1.38629 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547 34 0.13263 3.45319 2.84909 3.36185 34 - - 1.38629 1.38629 1.38629 1.38629 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547 35 0.13263 3.45319 2.84909 3.36185 35 - - 1.38629 1.38629 1.38629 1.38629 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547 36 3.51693 0.12064 3.56276 2.88963 36 - - 1.38629 1.38629 1.38629 1.38629 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547 37 3.16284 2.64227 3.20813 0.16716 37 - - 1.38629 1.38629 1.38629 1.38629 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547 38 3.16284 2.64227 3.20813 0.16716 38 - - 1.38629 1.38629 1.38629 1.38629 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547 39 0.13263 3.45319 2.84909 3.36185 39 - - 1.38629 1.38629 1.38629 1.38629 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547 40 0.13263 3.45319 2.84909 3.36185 40 - - 1.38629 1.38629 1.38629 1.38629 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547 41 2.99774 3.66122 0.10943 3.57364 41 - - 1.38629 1.38629 1.38629 1.38629 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547 42 3.51693 0.12064 3.56276 2.88963 42 - - 1.38629 1.38629 1.38629 1.38629 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547 43 0.13263 3.45319 2.84909 3.36185 43 - - 1.38629 1.38629 1.38629 1.38629 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547 44 3.16284 2.64227 3.20813 0.16716 44 - - 1.38629 1.38629 1.38629 1.38629 0.03534 4.05345 4.05345 1.46634 0.26236 1.09861 0.40547 45 0.13263 3.45319 2.84909 3.36185 45 - - 1.38629 1.38629 1.38629 1.38629 0.01783 4.03593 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Amoebozoa_4_LSU_start_onec_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 23:26:03 2012 NSEQ 63 EFFN 3.318420 CKSUM 1512418120 STATS LOCAL MSV -8.1399 0.71933 STATS LOCAL VITERBI -7.6092 0.71933 STATS LOCAL FORWARD -3.8899 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.16320 1.31838 1.69977 1.43877 1.38629 1.38629 1.38629 1.38629 0.03692 4.01068 4.01068 1.46634 0.26236 0.00000 * 1 3.02134 2.43366 3.07178 0.20186 1 - - 1.38629 1.38629 1.38629 1.38629 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547 2 3.43153 0.13040 3.48106 2.82785 2 - - 1.38629 1.38629 1.38629 1.38629 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547 3 0.14208 3.37890 2.80104 3.28043 3 - - 1.38629 1.38629 1.38629 1.38629 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547 4 3.43153 0.13040 3.48106 2.82785 4 - - 1.38629 1.38629 1.38629 1.38629 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547 5 2.94658 3.58637 0.11731 3.49090 5 - - 1.38629 1.38629 1.38629 1.38629 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547 6 0.14208 3.37890 2.80104 3.28043 6 - - 1.38629 1.38629 1.38629 1.38629 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547 7 3.43153 0.13040 3.48106 2.82785 7 - - 1.38629 1.38629 1.38629 1.38629 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547 8 3.43153 0.13040 3.48106 2.82785 8 - - 1.38629 1.38629 1.38629 1.38629 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547 9 3.08723 2.59426 3.13544 0.17890 9 - - 1.38629 1.38629 1.38629 1.38629 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547 10 3.43153 0.13040 3.48106 2.82785 10 - - 1.38629 1.38629 1.38629 1.38629 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547 11 0.14208 3.37890 2.80104 3.28043 11 - - 1.38629 1.38629 1.38629 1.38629 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547 12 2.73608 2.52824 2.97503 0.21774 12 - - 1.38629 1.38629 1.38629 1.38629 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547 13 0.14208 3.37890 2.80104 3.28043 13 - - 1.38629 1.38629 1.38629 1.38629 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547 14 3.02134 2.43366 3.07178 0.20186 14 - - 1.38629 1.38629 1.38629 1.38629 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547 15 3.43153 0.13040 3.48106 2.82785 15 - - 1.38629 1.38629 1.38629 1.38629 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547 16 0.14208 3.37890 2.80104 3.28043 16 - - 1.38629 1.38629 1.38629 1.38629 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547 17 0.14208 3.37890 2.80104 3.28043 17 - - 1.38629 1.38629 1.38629 1.38629 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547 18 2.94658 3.58637 0.11731 3.49090 18 - - 1.38629 1.38629 1.38629 1.38629 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547 19 3.08723 2.59426 3.13544 0.17890 19 - - 1.38629 1.38629 1.38629 1.38629 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547 20 2.94658 3.58637 0.11731 3.49090 20 - - 1.38629 1.38629 1.38629 1.38629 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547 21 0.14208 3.37890 2.80104 3.28043 21 - - 1.38629 1.38629 1.38629 1.38629 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547 22 2.94658 3.58637 0.11731 3.49090 22 - - 1.38629 1.38629 1.38629 1.38629 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547 23 0.14208 3.37890 2.80104 3.28043 23 - - 1.38629 1.38629 1.38629 1.38629 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547 24 3.08723 2.59426 3.13544 0.17890 24 - - 1.38629 1.38629 1.38629 1.38629 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547 25 3.08723 2.59426 3.13544 0.17890 25 - - 1.38629 1.38629 1.38629 1.38629 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547 26 0.14208 3.37890 2.80104 3.28043 26 - - 1.38629 1.38629 1.38629 1.38629 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547 27 3.43153 0.13040 3.48106 2.82785 27 - - 1.38629 1.38629 1.38629 1.38629 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547 28 3.43153 0.13040 3.48106 2.82785 28 - - 1.38629 1.38629 1.38629 1.38629 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547 29 3.43153 0.13040 3.48106 2.82785 29 - - 1.38629 1.38629 1.38629 1.38629 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547 30 2.94658 3.58637 0.11731 3.49090 30 - - 1.38629 1.38629 1.38629 1.38629 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547 31 3.43153 0.13040 3.48106 2.82785 31 - - 1.38629 1.38629 1.38629 1.38629 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547 32 3.08723 2.59426 3.13544 0.17890 32 - - 1.38629 1.38629 1.38629 1.38629 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547 33 2.94658 3.58637 0.11731 3.49090 33 - - 1.38629 1.38629 1.38629 1.38629 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547 34 0.14208 3.37890 2.80104 3.28043 34 - - 1.38629 1.38629 1.38629 1.38629 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547 35 0.14208 3.37890 2.80104 3.28043 35 - - 1.38629 1.38629 1.38629 1.38629 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547 36 3.43153 0.13040 3.48106 2.82785 36 - - 1.38629 1.38629 1.38629 1.38629 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547 37 3.08723 2.59426 3.13544 0.17890 37 - - 1.38629 1.38629 1.38629 1.38629 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547 38 3.08723 2.59426 3.13544 0.17890 38 - - 1.38629 1.38629 1.38629 1.38629 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547 39 0.14208 3.37890 2.80104 3.28043 39 - - 1.38629 1.38629 1.38629 1.38629 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547 40 0.14208 3.37890 2.80104 3.28043 40 - - 1.38629 1.38629 1.38629 1.38629 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547 41 2.89044 3.47872 0.12838 3.37899 41 - - 1.38629 1.38629 1.38629 1.38629 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547 42 3.43153 0.13040 3.48106 2.82785 42 - - 1.38629 1.38629 1.38629 1.38629 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547 43 0.14208 3.37890 2.80104 3.28043 43 - - 1.38629 1.38629 1.38629 1.38629 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547 44 3.08723 2.59426 3.13544 0.17890 44 - - 1.38629 1.38629 1.38629 1.38629 0.03692 4.01068 4.01068 1.46634 0.26236 1.09861 0.40547 45 0.14208 3.37890 2.80104 3.28043 45 - - 1.38629 1.38629 1.38629 1.38629 0.01863 3.99239 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Amoebozoa_4_LSU_start_oned_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 23:26:08 2012 NSEQ 24 EFFN 3.301758 CKSUM 3316240930 STATS LOCAL MSV -8.1199 0.71932 STATS LOCAL VITERBI -7.7229 0.71932 STATS LOCAL FORWARD -3.9195 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.06159 1.38916 1.79405 1.43329 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 0.00000 * 1 3.08183 2.59083 3.13024 0.17977 1 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 2 0.14279 3.37354 2.79756 3.27457 2 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 3 3.08183 2.59083 3.13024 0.17977 3 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 4 3.42536 0.13114 3.47515 2.82335 4 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 5 0.14279 3.37354 2.79756 3.27457 5 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 6 0.14279 3.37354 2.79756 3.27457 6 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 7 3.42536 0.13114 3.47515 2.82335 7 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 8 3.42536 0.13114 3.47515 2.82335 8 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 9 3.08183 2.59083 3.13024 0.17977 9 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 10 3.42536 0.13114 3.47515 2.82335 10 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 11 0.14279 3.37354 2.79756 3.27457 11 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 12 0.14279 3.37354 2.79756 3.27457 12 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 13 0.14279 3.37354 2.79756 3.27457 13 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 14 3.08183 2.59083 3.13024 0.17977 14 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 15 3.42536 0.13114 3.47515 2.82335 15 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 16 0.14279 3.37354 2.79756 3.27457 16 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 17 0.14279 3.37354 2.79756 3.27457 17 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 18 2.94283 3.58093 0.11791 3.48489 18 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 19 3.08183 2.59083 3.13024 0.17977 19 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 20 2.94283 3.58093 0.11791 3.48489 20 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 21 0.14279 3.37354 2.79756 3.27457 21 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 22 2.94283 3.58093 0.11791 3.48489 22 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 23 0.14279 3.37354 2.79756 3.27457 23 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 24 3.08183 2.59083 3.13024 0.17977 24 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 25 3.08183 2.59083 3.13024 0.17977 25 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 26 0.14279 3.37354 2.79756 3.27457 26 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 27 3.42536 0.13114 3.47515 2.82335 27 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 28 3.42536 0.13114 3.47515 2.82335 28 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 29 3.42536 0.13114 3.47515 2.82335 29 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 30 2.94283 3.58093 0.11791 3.48489 30 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 31 3.42536 0.13114 3.47515 2.82335 31 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 32 3.08183 2.59083 3.13024 0.17977 32 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 33 2.94283 3.58093 0.11791 3.48489 33 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 34 0.14279 3.37354 2.79756 3.27457 34 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 35 0.14279 3.37354 2.79756 3.27457 35 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 36 3.42536 0.13114 3.47515 2.82335 36 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 37 3.08183 2.59083 3.13024 0.17977 37 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 38 3.08183 2.59083 3.13024 0.17977 38 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 39 0.14279 3.37354 2.79756 3.27457 39 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 40 0.14279 3.37354 2.79756 3.27457 40 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 41 2.94283 3.58093 0.11791 3.48489 41 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 42 3.42536 0.13114 3.47515 2.82335 42 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 43 0.14279 3.37354 2.79756 3.27457 43 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 44 3.08183 2.59083 3.13024 0.17977 44 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 45 0.14279 3.37354 2.79756 3.27457 45 - - 1.38629 1.38629 1.38629 1.38629 0.01869 3.98931 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Amoebozoa_4_LSU_start_threea_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 23:27:32 2012 NSEQ 91 EFFN 3.357513 CKSUM 3218427169 STATS LOCAL MSV -8.0690 0.71933 STATS LOCAL VITERBI -7.5442 0.71933 STATS LOCAL FORWARD -4.3497 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.34181 1.24914 1.80713 1.24565 1.38629 1.38629 1.38629 1.38629 0.03665 4.01774 4.01774 1.46634 0.26236 0.00000 * 1 0.14044 3.39135 2.80912 3.29407 1 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547 2 3.09981 2.60227 3.14754 0.17688 2 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547 3 3.09981 2.60227 3.14754 0.17688 3 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547 4 3.44588 0.12869 3.49480 2.83829 4 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547 5 3.44588 0.12869 3.49480 2.83829 5 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547 6 2.95525 3.59899 0.11594 3.50483 6 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547 7 3.44588 0.12869 3.49480 2.83829 7 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547 8 3.44588 0.12869 3.49480 2.83829 8 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547 9 3.09981 2.60227 3.14754 0.17688 9 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547 10 3.44588 0.12869 3.49480 2.83829 10 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547 11 0.14044 3.39135 2.80912 3.29407 11 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547 12 3.44588 0.12869 3.49480 2.83829 12 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547 13 3.44588 0.12869 3.49480 2.83829 13 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547 14 3.09981 2.60227 3.14754 0.17688 14 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547 15 3.09981 2.60227 3.14754 0.17688 15 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547 16 2.90007 2.52341 2.72811 0.22383 16 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547 17 2.95525 3.59899 0.11594 3.50483 17 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547 18 3.09981 2.60227 3.14754 0.17688 18 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547 19 0.14044 3.39135 2.80912 3.29407 19 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547 20 0.14044 3.39135 2.80912 3.29407 20 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547 21 2.95525 3.59899 0.11594 3.50483 21 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547 22 0.14044 3.39135 2.80912 3.29407 22 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547 23 3.09981 2.60227 3.14754 0.17688 23 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547 24 3.09981 2.60227 3.14754 0.17688 24 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547 25 0.14044 3.39135 2.80912 3.29407 25 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547 26 3.44588 0.12869 3.49480 2.83829 26 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547 27 3.44588 0.12869 3.49480 2.83829 27 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547 28 3.44588 0.12869 3.49480 2.83829 28 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547 29 2.95525 3.59899 0.11594 3.50483 29 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547 30 3.44588 0.12869 3.49480 2.83829 30 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547 31 3.09981 2.60227 3.14754 0.17688 31 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547 32 2.95525 3.59899 0.11594 3.50483 32 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547 33 0.14044 3.39135 2.80912 3.29407 33 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547 34 0.14044 3.39135 2.80912 3.29407 34 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547 35 3.44588 0.12869 3.49480 2.83829 35 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547 36 3.09981 2.60227 3.14754 0.17688 36 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547 37 3.09981 2.60227 3.14754 0.17688 37 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547 38 0.14044 3.39135 2.80912 3.29407 38 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547 39 0.14044 3.39135 2.80912 3.29407 39 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547 40 2.95525 3.59899 0.11594 3.50483 40 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547 41 3.44588 0.12869 3.49480 2.83829 41 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547 42 0.14044 3.39135 2.80912 3.29407 42 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547 43 3.09981 2.60227 3.14754 0.17688 43 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547 44 0.14044 3.39135 2.80912 3.29407 44 - - 1.38629 1.38629 1.38629 1.38629 0.03665 4.01774 4.01774 1.46634 0.26236 1.09861 0.40547 45 3.09981 2.60227 3.14754 0.17688 45 - - 1.38629 1.38629 1.38629 1.38629 0.01849 3.99958 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Amoebozoa_4_LSU_start_threeb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 23:27:39 2012 NSEQ 37 EFFN 3.355835 CKSUM 748456799 STATS LOCAL MSV -8.0028 0.71934 STATS LOCAL VITERBI -7.6102 0.71934 STATS LOCAL FORWARD -4.0065 0.71934 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.21748 1.37885 1.69924 1.31180 1.38629 1.38629 1.38629 1.38629 0.03666 4.01743 4.01743 1.46634 0.26236 0.00000 * 1 0.14051 3.39082 2.80878 3.29348 1 - - 1.38629 1.38629 1.38629 1.38629 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547 2 3.09928 2.60192 3.14702 0.17697 2 - - 1.38629 1.38629 1.38629 1.38629 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547 3 2.95488 3.59846 0.11600 3.50424 3 - - 1.38629 1.38629 1.38629 1.38629 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547 4 3.09928 2.60192 3.14702 0.17697 4 - - 1.38629 1.38629 1.38629 1.38629 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547 5 3.09928 2.60192 3.14702 0.17697 5 - - 1.38629 1.38629 1.38629 1.38629 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547 6 2.95488 3.59846 0.11600 3.50424 6 - - 1.38629 1.38629 1.38629 1.38629 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547 7 3.44527 0.12877 3.49421 2.83784 7 - - 1.38629 1.38629 1.38629 1.38629 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547 8 3.44527 0.12877 3.49421 2.83784 8 - - 1.38629 1.38629 1.38629 1.38629 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547 9 3.09928 2.60192 3.14702 0.17697 9 - - 1.38629 1.38629 1.38629 1.38629 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547 10 3.44527 0.12877 3.49421 2.83784 10 - - 1.38629 1.38629 1.38629 1.38629 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547 11 0.14051 3.39082 2.80878 3.29348 11 - - 1.38629 1.38629 1.38629 1.38629 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547 12 3.09928 2.60192 3.14702 0.17697 12 - - 1.38629 1.38629 1.38629 1.38629 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547 13 3.44527 0.12877 3.49421 2.83784 13 - - 1.38629 1.38629 1.38629 1.38629 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547 14 2.83510 2.01766 2.89263 0.28384 14 - - 1.38629 1.38629 1.38629 1.38629 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547 15 0.14051 3.39082 2.80878 3.29348 15 - - 1.38629 1.38629 1.38629 1.38629 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547 16 0.14051 3.39082 2.80878 3.29348 16 - - 1.38629 1.38629 1.38629 1.38629 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547 17 2.95488 3.59846 0.11600 3.50424 17 - - 1.38629 1.38629 1.38629 1.38629 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547 18 3.09928 2.60192 3.14702 0.17697 18 - - 1.38629 1.38629 1.38629 1.38629 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547 19 0.14051 3.39082 2.80878 3.29348 19 - - 1.38629 1.38629 1.38629 1.38629 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547 20 0.14051 3.39082 2.80878 3.29348 20 - - 1.38629 1.38629 1.38629 1.38629 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547 21 2.95488 3.59846 0.11600 3.50424 21 - - 1.38629 1.38629 1.38629 1.38629 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547 22 0.14051 3.39082 2.80878 3.29348 22 - - 1.38629 1.38629 1.38629 1.38629 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547 23 3.44527 0.12877 3.49421 2.83784 23 - - 1.38629 1.38629 1.38629 1.38629 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547 24 3.09928 2.60192 3.14702 0.17697 24 - - 1.38629 1.38629 1.38629 1.38629 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547 25 0.14051 3.39082 2.80878 3.29348 25 - - 1.38629 1.38629 1.38629 1.38629 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547 26 3.44527 0.12877 3.49421 2.83784 26 - - 1.38629 1.38629 1.38629 1.38629 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547 27 3.44527 0.12877 3.49421 2.83784 27 - - 1.38629 1.38629 1.38629 1.38629 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547 28 3.44527 0.12877 3.49421 2.83784 28 - - 1.38629 1.38629 1.38629 1.38629 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547 29 2.95488 3.59846 0.11600 3.50424 29 - - 1.38629 1.38629 1.38629 1.38629 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547 30 3.44527 0.12877 3.49421 2.83784 30 - - 1.38629 1.38629 1.38629 1.38629 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547 31 3.09928 2.60192 3.14702 0.17697 31 - - 1.38629 1.38629 1.38629 1.38629 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547 32 2.95488 3.59846 0.11600 3.50424 32 - - 1.38629 1.38629 1.38629 1.38629 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547 33 0.14051 3.39082 2.80878 3.29348 33 - - 1.38629 1.38629 1.38629 1.38629 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547 34 0.14051 3.39082 2.80878 3.29348 34 - - 1.38629 1.38629 1.38629 1.38629 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547 35 3.44527 0.12877 3.49421 2.83784 35 - - 1.38629 1.38629 1.38629 1.38629 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547 36 3.09928 2.60192 3.14702 0.17697 36 - - 1.38629 1.38629 1.38629 1.38629 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547 37 3.09928 2.60192 3.14702 0.17697 37 - - 1.38629 1.38629 1.38629 1.38629 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547 38 0.14051 3.39082 2.80878 3.29348 38 - - 1.38629 1.38629 1.38629 1.38629 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547 39 0.14051 3.39082 2.80878 3.29348 39 - - 1.38629 1.38629 1.38629 1.38629 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547 40 2.95488 3.59846 0.11600 3.50424 40 - - 1.38629 1.38629 1.38629 1.38629 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547 41 3.44527 0.12877 3.49421 2.83784 41 - - 1.38629 1.38629 1.38629 1.38629 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547 42 0.14051 3.39082 2.80878 3.29348 42 - - 1.38629 1.38629 1.38629 1.38629 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547 43 3.09928 2.60192 3.14702 0.17697 43 - - 1.38629 1.38629 1.38629 1.38629 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547 44 0.14051 3.39082 2.80878 3.29348 44 - - 1.38629 1.38629 1.38629 1.38629 0.03666 4.01743 4.01743 1.46634 0.26236 1.09861 0.40547 45 3.09928 2.60192 3.14702 0.17697 45 - - 1.38629 1.38629 1.38629 1.38629 0.01850 3.99927 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Amoebozoa_4_LSU_start_threec_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 23:27:48 2012 NSEQ 24 EFFN 3.301758 CKSUM 2052849582 STATS LOCAL MSV -8.0328 0.71932 STATS LOCAL VITERBI -7.7296 0.71932 STATS LOCAL FORWARD -4.1535 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.34051 1.31747 1.61312 1.30486 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 0.00000 * 1 0.14279 3.37354 2.79756 3.27457 1 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 2 3.08183 2.59083 3.13024 0.17977 2 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 3 2.94283 3.58093 0.11791 3.48489 3 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 4 3.08183 2.59083 3.13024 0.17977 4 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 5 3.08183 2.59083 3.13024 0.17977 5 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 6 2.94283 3.58093 0.11791 3.48489 6 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 7 3.42536 0.13114 3.47515 2.82335 7 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 8 3.42536 0.13114 3.47515 2.82335 8 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 9 3.08183 2.59083 3.13024 0.17977 9 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 10 3.42536 0.13114 3.47515 2.82335 10 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 11 0.14279 3.37354 2.79756 3.27457 11 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 12 3.42536 0.13114 3.47515 2.82335 12 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 13 3.42536 0.13114 3.47515 2.82335 13 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 14 3.08183 2.59083 3.13024 0.17977 14 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 15 3.08183 2.59083 3.13024 0.17977 15 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 16 2.94283 3.58093 0.11791 3.48489 16 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 17 2.94283 3.58093 0.11791 3.48489 17 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 18 3.08183 2.59083 3.13024 0.17977 18 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 19 0.14279 3.37354 2.79756 3.27457 19 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 20 0.14279 3.37354 2.79756 3.27457 20 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 21 2.94283 3.58093 0.11791 3.48489 21 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 22 0.14279 3.37354 2.79756 3.27457 22 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 23 3.42536 0.13114 3.47515 2.82335 23 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 24 3.08183 2.59083 3.13024 0.17977 24 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 25 0.14279 3.37354 2.79756 3.27457 25 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 26 3.42536 0.13114 3.47515 2.82335 26 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 27 3.42536 0.13114 3.47515 2.82335 27 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 28 3.42536 0.13114 3.47515 2.82335 28 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 29 2.94283 3.58093 0.11791 3.48489 29 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 30 3.42536 0.13114 3.47515 2.82335 30 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 31 3.08183 2.59083 3.13024 0.17977 31 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 32 2.94283 3.58093 0.11791 3.48489 32 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 33 0.14279 3.37354 2.79756 3.27457 33 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 34 0.14279 3.37354 2.79756 3.27457 34 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 35 3.42536 0.13114 3.47515 2.82335 35 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 36 3.08183 2.59083 3.13024 0.17977 36 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 37 3.08183 2.59083 3.13024 0.17977 37 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 38 0.14279 3.37354 2.79756 3.27457 38 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 39 0.14279 3.37354 2.79756 3.27457 39 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 40 2.94283 3.58093 0.11791 3.48489 40 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 41 3.42536 0.13114 3.47515 2.82335 41 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 42 0.14279 3.37354 2.79756 3.27457 42 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 43 3.08183 2.59083 3.13024 0.17977 43 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 44 0.14279 3.37354 2.79756 3.27457 44 - - 1.38629 1.38629 1.38629 1.38629 0.03703 4.00765 4.00765 1.46634 0.26236 1.09861 0.40547 45 3.08183 2.59083 3.13024 0.17977 45 - - 1.38629 1.38629 1.38629 1.38629 0.01869 3.98931 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Amoebozoa_4_LSU_start_two_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 23:27:18 2012 NSEQ 90 EFFN 3.589783 CKSUM 608676318 STATS LOCAL MSV -7.8555 0.71932 STATS LOCAL VITERBI -7.7531 0.71932 STATS LOCAL FORWARD -4.2533 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.23957 1.30603 1.77951 1.30608 1.38629 1.38629 1.38629 1.38629 0.03515 4.05868 4.05868 1.46634 0.26236 0.00000 * 1 0.67175 2.28147 2.23032 1.27454 1 - - 1.38629 1.38629 1.38629 1.38629 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547 2 3.17198 2.64807 3.21692 0.16580 2 - - 1.38629 1.38629 1.38629 1.38629 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547 3 2.21370 2.19922 1.35245 0.65160 3 - - 1.38629 1.38629 1.38629 1.38629 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547 4 3.17198 2.64807 3.21692 0.16580 4 - - 1.38629 1.38629 1.38629 1.38629 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547 5 3.52713 0.11953 3.57250 2.89695 5 - - 1.38629 1.38629 1.38629 1.38629 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547 6 3.00378 3.67011 0.10853 3.58348 6 - - 1.38629 1.38629 1.38629 1.38629 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547 7 3.52713 0.11953 3.57250 2.89695 7 - - 1.38629 1.38629 1.38629 1.38629 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547 8 3.52713 0.11953 3.57250 2.89695 8 - - 1.38629 1.38629 1.38629 1.38629 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547 9 3.17198 2.64807 3.21692 0.16580 9 - - 1.38629 1.38629 1.38629 1.38629 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547 10 3.52713 0.11953 3.57250 2.89695 10 - - 1.38629 1.38629 1.38629 1.38629 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547 11 0.13155 3.46209 2.85482 3.37161 11 - - 1.38629 1.38629 1.38629 1.38629 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547 12 3.17198 2.64807 3.21692 0.16580 12 - - 1.38629 1.38629 1.38629 1.38629 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547 13 3.52713 0.11953 3.57250 2.89695 13 - - 1.38629 1.38629 1.38629 1.38629 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547 14 3.52713 0.11953 3.57250 2.89695 14 - - 1.38629 1.38629 1.38629 1.38629 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547 15 0.13155 3.46209 2.85482 3.37161 15 - - 1.38629 1.38629 1.38629 1.38629 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547 16 0.13155 3.46209 2.85482 3.37161 16 - - 1.38629 1.38629 1.38629 1.38629 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547 17 3.00378 3.67011 0.10853 3.58348 17 - - 1.38629 1.38629 1.38629 1.38629 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547 18 3.17198 2.64807 3.21692 0.16580 18 - - 1.38629 1.38629 1.38629 1.38629 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547 19 0.13155 3.46209 2.85482 3.37161 19 - - 1.38629 1.38629 1.38629 1.38629 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547 20 0.13155 3.46209 2.85482 3.37161 20 - - 1.38629 1.38629 1.38629 1.38629 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547 21 3.00378 3.67011 0.10853 3.58348 21 - - 1.38629 1.38629 1.38629 1.38629 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547 22 0.13155 3.46209 2.85482 3.37161 22 - - 1.38629 1.38629 1.38629 1.38629 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547 23 3.17198 2.64807 3.21692 0.16580 23 - - 1.38629 1.38629 1.38629 1.38629 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547 24 3.17198 2.64807 3.21692 0.16580 24 - - 1.38629 1.38629 1.38629 1.38629 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547 25 0.13155 3.46209 2.85482 3.37161 25 - - 1.38629 1.38629 1.38629 1.38629 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547 26 3.52713 0.11953 3.57250 2.89695 26 - - 1.38629 1.38629 1.38629 1.38629 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547 27 3.52713 0.11953 3.57250 2.89695 27 - - 1.38629 1.38629 1.38629 1.38629 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547 28 3.52713 0.11953 3.57250 2.89695 28 - - 1.38629 1.38629 1.38629 1.38629 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547 29 3.00378 3.67011 0.10853 3.58348 29 - - 1.38629 1.38629 1.38629 1.38629 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547 30 3.52713 0.11953 3.57250 2.89695 30 - - 1.38629 1.38629 1.38629 1.38629 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547 31 3.17198 2.64807 3.21692 0.16580 31 - - 1.38629 1.38629 1.38629 1.38629 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547 32 3.00378 3.67011 0.10853 3.58348 32 - - 1.38629 1.38629 1.38629 1.38629 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547 33 0.13155 3.46209 2.85482 3.37161 33 - - 1.38629 1.38629 1.38629 1.38629 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547 34 0.13155 3.46209 2.85482 3.37161 34 - - 1.38629 1.38629 1.38629 1.38629 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547 35 3.52713 0.11953 3.57250 2.89695 35 - - 1.38629 1.38629 1.38629 1.38629 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547 36 3.17198 2.64807 3.21692 0.16580 36 - - 1.38629 1.38629 1.38629 1.38629 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547 37 3.17198 2.64807 3.21692 0.16580 37 - - 1.38629 1.38629 1.38629 1.38629 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547 38 0.13155 3.46209 2.85482 3.37161 38 - - 1.38629 1.38629 1.38629 1.38629 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547 39 0.13155 3.46209 2.85482 3.37161 39 - - 1.38629 1.38629 1.38629 1.38629 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547 40 3.00378 3.67011 0.10853 3.58348 40 - - 1.38629 1.38629 1.38629 1.38629 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547 41 3.52713 0.11953 3.57250 2.89695 41 - - 1.38629 1.38629 1.38629 1.38629 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547 42 0.13155 3.46209 2.85482 3.37161 42 - - 1.38629 1.38629 1.38629 1.38629 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547 43 3.17198 2.64807 3.21692 0.16580 43 - - 1.38629 1.38629 1.38629 1.38629 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547 44 0.13155 3.46209 2.85482 3.37161 44 - - 1.38629 1.38629 1.38629 1.38629 0.03515 4.05868 4.05868 1.46634 0.26236 1.09861 0.40547 45 3.17198 2.64807 3.21692 0.16580 45 - - 1.38629 1.38629 1.38629 1.38629 0.01773 4.04126 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 1_SSU_Amoebozoa_1_SSU_end_onea_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 22:26:03 2012 NSEQ 50 EFFN 3.311157 CKSUM 580143303 STATS LOCAL MSV -8.0808 0.71933 STATS LOCAL VITERBI -7.6783 0.71933 STATS LOCAL FORWARD -4.0882 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.26882 1.71702 1.24405 1.38222 1.38629 1.38629 1.38629 1.38629 0.03696 4.00936 4.00936 1.46634 0.26236 0.00000 * 1 0.14238 3.37657 2.79952 3.27788 1 - - 1.38629 1.38629 1.38629 1.38629 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547 2 2.94495 3.58400 0.11757 3.48828 2 - - 1.38629 1.38629 1.38629 1.38629 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547 3 3.01055 2.41279 3.06138 0.20537 3 - - 1.38629 1.38629 1.38629 1.38629 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547 4 3.42885 0.13072 3.47849 2.82590 4 - - 1.38629 1.38629 1.38629 1.38629 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547 5 2.94495 3.58400 0.11757 3.48828 5 - - 1.38629 1.38629 1.38629 1.38629 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547 6 3.01055 2.41279 3.06138 0.20537 6 - - 1.38629 1.38629 1.38629 1.38629 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547 7 0.14238 3.37657 2.79952 3.27788 7 - - 1.38629 1.38629 1.38629 1.38629 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547 8 0.14238 3.37657 2.79952 3.27788 8 - - 1.38629 1.38629 1.38629 1.38629 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547 9 3.42885 0.13072 3.47849 2.82590 9 - - 1.38629 1.38629 1.38629 1.38629 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547 10 0.14238 3.37657 2.79952 3.27788 10 - - 1.38629 1.38629 1.38629 1.38629 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547 11 0.14238 3.37657 2.79952 3.27788 11 - - 1.38629 1.38629 1.38629 1.38629 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547 12 2.94495 3.58400 0.11757 3.48828 12 - - 1.38629 1.38629 1.38629 1.38629 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547 13 2.94495 3.58400 0.11757 3.48828 13 - - 1.38629 1.38629 1.38629 1.38629 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547 14 3.08488 2.59277 3.13318 0.17928 14 - - 1.38629 1.38629 1.38629 1.38629 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547 15 0.14238 3.37657 2.79952 3.27788 15 - - 1.38629 1.38629 1.38629 1.38629 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547 16 3.08488 2.59277 3.13318 0.17928 16 - - 1.38629 1.38629 1.38629 1.38629 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547 17 3.08488 2.59277 3.13318 0.17928 17 - - 1.38629 1.38629 1.38629 1.38629 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547 18 3.24463 0.17310 3.29975 2.48809 18 - - 1.38629 1.38629 1.38629 1.38629 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547 19 2.94495 3.58400 0.11757 3.48828 19 - - 1.38629 1.38629 1.38629 1.38629 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547 20 3.08488 2.59277 3.13318 0.17928 20 - - 1.38629 1.38629 1.38629 1.38629 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547 21 0.14238 3.37657 2.79952 3.27788 21 - - 1.38629 1.38629 1.38629 1.38629 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547 22 2.94495 3.58400 0.11757 3.48828 22 - - 1.38629 1.38629 1.38629 1.38629 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547 23 2.94495 3.58400 0.11757 3.48828 23 - - 1.38629 1.38629 1.38629 1.38629 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547 24 3.08488 2.59277 3.13318 0.17928 24 - - 1.38629 1.38629 1.38629 1.38629 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547 25 2.94495 3.58400 0.11757 3.48828 25 - - 1.38629 1.38629 1.38629 1.38629 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547 26 0.14238 3.37657 2.79952 3.27788 26 - - 1.38629 1.38629 1.38629 1.38629 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547 27 0.14238 3.37657 2.79952 3.27788 27 - - 1.38629 1.38629 1.38629 1.38629 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547 28 3.42885 0.13072 3.47849 2.82590 28 - - 1.38629 1.38629 1.38629 1.38629 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547 29 3.42885 0.13072 3.47849 2.82590 29 - - 1.38629 1.38629 1.38629 1.38629 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547 30 3.01055 2.41279 3.06138 0.20537 30 - - 1.38629 1.38629 1.38629 1.38629 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547 31 2.94495 3.58400 0.11757 3.48828 31 - - 1.38629 1.38629 1.38629 1.38629 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547 32 3.31480 0.15590 3.36776 2.60981 32 - - 1.38629 1.38629 1.38629 1.38629 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547 33 2.94495 3.58400 0.11757 3.48828 33 - - 1.38629 1.38629 1.38629 1.38629 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547 34 2.94495 3.58400 0.11757 3.48828 34 - - 1.38629 1.38629 1.38629 1.38629 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547 35 0.14238 3.37657 2.79952 3.27788 35 - - 1.38629 1.38629 1.38629 1.38629 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547 36 3.08488 2.59277 3.13318 0.17928 36 - - 1.38629 1.38629 1.38629 1.38629 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547 37 2.94495 3.58400 0.11757 3.48828 37 - - 1.38629 1.38629 1.38629 1.38629 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547 38 2.94495 3.58400 0.11757 3.48828 38 - - 1.38629 1.38629 1.38629 1.38629 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547 39 0.14238 3.37657 2.79952 3.27788 39 - - 1.38629 1.38629 1.38629 1.38629 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547 40 3.08488 2.59277 3.13318 0.17928 40 - - 1.38629 1.38629 1.38629 1.38629 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547 41 3.42885 0.13072 3.47849 2.82590 41 - - 1.38629 1.38629 1.38629 1.38629 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547 42 0.14238 3.37657 2.79952 3.27788 42 - - 1.38629 1.38629 1.38629 1.38629 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547 43 3.08488 2.59277 3.13318 0.17928 43 - - 1.38629 1.38629 1.38629 1.38629 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547 44 3.08488 2.59277 3.13318 0.17928 44 - - 1.38629 1.38629 1.38629 1.38629 0.03696 4.00936 4.00936 1.46634 0.26236 1.09861 0.40547 45 0.14238 3.37657 2.79952 3.27788 45 - - 1.38629 1.38629 1.38629 1.38629 0.01865 3.99105 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 1_SSU_Amoebozoa_1_SSU_end_oneb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 22:26:13 2012 NSEQ 12 EFFN 3.477539 CKSUM 3078232557 STATS LOCAL MSV -7.3971 0.71932 STATS LOCAL VITERBI -7.6461 0.71932 STATS LOCAL FORWARD -4.1544 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.31721 1.62507 1.26310 1.37656 1.38629 1.38629 1.38629 1.38629 0.03586 4.03910 4.03910 1.46634 0.26236 0.00000 * 1 0.13568 3.42858 2.83322 3.33486 1 - - 1.38629 1.38629 1.38629 1.38629 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547 2 2.98094 3.63655 0.11196 3.54635 2 - - 1.38629 1.38629 1.38629 1.38629 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547 3 3.13765 2.62630 3.18392 0.17097 3 - - 1.38629 1.38629 1.38629 1.38629 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547 4 3.48870 0.12377 3.53577 2.86929 4 - - 1.38629 1.38629 1.38629 1.38629 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547 5 2.98094 3.63655 0.11196 3.54635 5 - - 1.38629 1.38629 1.38629 1.38629 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547 6 3.13765 2.62630 3.18392 0.17097 6 - - 1.38629 1.38629 1.38629 1.38629 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547 7 0.13568 3.42858 2.83322 3.33486 7 - - 1.38629 1.38629 1.38629 1.38629 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547 8 0.13568 3.42858 2.83322 3.33486 8 - - 1.38629 1.38629 1.38629 1.38629 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547 9 3.48870 0.12377 3.53577 2.86929 9 - - 1.38629 1.38629 1.38629 1.38629 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547 10 0.13568 3.42858 2.83322 3.33486 10 - - 1.38629 1.38629 1.38629 1.38629 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547 11 0.13568 3.42858 2.83322 3.33486 11 - - 1.38629 1.38629 1.38629 1.38629 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547 12 2.98094 3.63655 0.11196 3.54635 12 - - 1.38629 1.38629 1.38629 1.38629 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547 13 2.98094 3.63655 0.11196 3.54635 13 - - 1.38629 1.38629 1.38629 1.38629 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547 14 3.13765 2.62630 3.18392 0.17097 14 - - 1.38629 1.38629 1.38629 1.38629 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547 15 0.13568 3.42858 2.83322 3.33486 15 - - 1.38629 1.38629 1.38629 1.38629 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547 16 3.13765 2.62630 3.18392 0.17097 16 - - 1.38629 1.38629 1.38629 1.38629 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547 17 3.48870 0.12377 3.53577 2.86929 17 - - 1.38629 1.38629 1.38629 1.38629 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547 18 2.78716 0.27620 2.35451 2.46742 18 - - 1.38629 1.38629 1.38629 1.38629 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547 19 2.98094 3.63655 0.11196 3.54635 19 - - 1.38629 1.38629 1.38629 1.38629 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547 20 3.13765 2.62630 3.18392 0.17097 20 - - 1.38629 1.38629 1.38629 1.38629 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547 21 0.13568 3.42858 2.83322 3.33486 21 - - 1.38629 1.38629 1.38629 1.38629 0.32896 4.03910 1.33668 1.46634 0.26236 1.09861 0.40547 22 2.56939 3.07022 0.19408 2.92959 22 - - 1.38629 1.38629 1.38629 1.38629 0.04779 3.75793 3.75793 1.46634 0.26236 0.12583 2.13510 23 2.98094 3.63655 0.11196 3.54635 23 - - 1.38629 1.38629 1.38629 1.38629 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547 24 3.13765 2.62630 3.18392 0.17097 24 - - 1.38629 1.38629 1.38629 1.38629 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547 25 2.98094 3.63655 0.11196 3.54635 25 - - 1.38629 1.38629 1.38629 1.38629 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547 26 0.13568 3.42858 2.83322 3.33486 26 - - 1.38629 1.38629 1.38629 1.38629 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547 27 0.13568 3.42858 2.83322 3.33486 27 - - 1.38629 1.38629 1.38629 1.38629 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547 28 3.48870 0.12377 3.53577 2.86929 28 - - 1.38629 1.38629 1.38629 1.38629 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547 29 3.48870 0.12377 3.53577 2.86929 29 - - 1.38629 1.38629 1.38629 1.38629 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547 30 3.13765 2.62630 3.18392 0.17097 30 - - 1.38629 1.38629 1.38629 1.38629 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547 31 2.98094 3.63655 0.11196 3.54635 31 - - 1.38629 1.38629 1.38629 1.38629 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547 32 3.48870 0.12377 3.53577 2.86929 32 - - 1.38629 1.38629 1.38629 1.38629 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547 33 2.62697 2.44597 0.24485 2.84327 33 - - 1.38629 1.38629 1.38629 1.38629 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547 34 2.98094 3.63655 0.11196 3.54635 34 - - 1.38629 1.38629 1.38629 1.38629 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547 35 0.13568 3.42858 2.83322 3.33486 35 - - 1.38629 1.38629 1.38629 1.38629 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547 36 3.13765 2.62630 3.18392 0.17097 36 - - 1.38629 1.38629 1.38629 1.38629 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547 37 2.98094 3.63655 0.11196 3.54635 37 - - 1.38629 1.38629 1.38629 1.38629 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547 38 2.98094 3.63655 0.11196 3.54635 38 - - 1.38629 1.38629 1.38629 1.38629 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547 39 0.13568 3.42858 2.83322 3.33486 39 - - 1.38629 1.38629 1.38629 1.38629 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547 40 3.13765 2.62630 3.18392 0.17097 40 - - 1.38629 1.38629 1.38629 1.38629 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547 41 3.48870 0.12377 3.53577 2.86929 41 - - 1.38629 1.38629 1.38629 1.38629 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547 42 0.13568 3.42858 2.83322 3.33486 42 - - 1.38629 1.38629 1.38629 1.38629 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547 43 3.13765 2.62630 3.18392 0.17097 43 - - 1.38629 1.38629 1.38629 1.38629 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547 44 3.13765 2.62630 3.18392 0.17097 44 - - 1.38629 1.38629 1.38629 1.38629 0.03586 4.03910 4.03910 1.46634 0.26236 1.09861 0.40547 45 2.10018 2.39300 2.66436 0.33328 45 - - 1.38629 1.38629 1.38629 1.38629 0.01809 4.02133 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 1_SSU_Amoebozoa_1_SSU_end_onec_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 22:26:19 2012 NSEQ 13 EFFN 3.240479 CKSUM 1661502292 STATS LOCAL MSV -8.0638 0.71932 STATS LOCAL VITERBI -7.7447 0.71932 STATS LOCAL FORWARD -4.3884 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.34170 1.54513 1.18912 1.51038 1.38629 1.38629 1.38629 1.38629 0.03745 3.99645 3.99645 1.46634 0.26236 0.00000 * 1 0.14547 3.35358 2.78456 3.25273 1 - - 1.38629 1.38629 1.38629 1.38629 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547 2 2.92882 3.56061 0.12017 3.46248 2 - - 1.38629 1.38629 1.38629 1.38629 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547 3 3.06176 2.57805 3.11093 0.18307 3 - - 1.38629 1.38629 1.38629 1.38629 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547 4 3.40234 0.13394 3.45309 2.80654 4 - - 1.38629 1.38629 1.38629 1.38629 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547 5 2.92882 3.56061 0.12017 3.46248 5 - - 1.38629 1.38629 1.38629 1.38629 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547 6 3.06176 2.57805 3.11093 0.18307 6 - - 1.38629 1.38629 1.38629 1.38629 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547 7 0.14547 3.35358 2.78456 3.25273 7 - - 1.38629 1.38629 1.38629 1.38629 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547 8 0.14547 3.35358 2.78456 3.25273 8 - - 1.38629 1.38629 1.38629 1.38629 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547 9 3.40234 0.13394 3.45309 2.80654 9 - - 1.38629 1.38629 1.38629 1.38629 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547 10 0.14547 3.35358 2.78456 3.25273 10 - - 1.38629 1.38629 1.38629 1.38629 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547 11 0.14547 3.35358 2.78456 3.25273 11 - - 1.38629 1.38629 1.38629 1.38629 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547 12 2.92882 3.56061 0.12017 3.46248 12 - - 1.38629 1.38629 1.38629 1.38629 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547 13 2.92882 3.56061 0.12017 3.46248 13 - - 1.38629 1.38629 1.38629 1.38629 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547 14 3.06176 2.57805 3.11093 0.18307 14 - - 1.38629 1.38629 1.38629 1.38629 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547 15 3.40234 0.13394 3.45309 2.80654 15 - - 1.38629 1.38629 1.38629 1.38629 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547 16 3.06176 2.57805 3.11093 0.18307 16 - - 1.38629 1.38629 1.38629 1.38629 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547 17 3.40234 0.13394 3.45309 2.80654 17 - - 1.38629 1.38629 1.38629 1.38629 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547 18 3.40234 0.13394 3.45309 2.80654 18 - - 1.38629 1.38629 1.38629 1.38629 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547 19 2.92882 3.56061 0.12017 3.46248 19 - - 1.38629 1.38629 1.38629 1.38629 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547 20 3.06176 2.57805 3.11093 0.18307 20 - - 1.38629 1.38629 1.38629 1.38629 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547 21 0.14547 3.35358 2.78456 3.25273 21 - - 1.38629 1.38629 1.38629 1.38629 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547 22 2.92882 3.56061 0.12017 3.46248 22 - - 1.38629 1.38629 1.38629 1.38629 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547 23 2.92882 3.56061 0.12017 3.46248 23 - - 1.38629 1.38629 1.38629 1.38629 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547 24 3.06176 2.57805 3.11093 0.18307 24 - - 1.38629 1.38629 1.38629 1.38629 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547 25 2.92882 3.56061 0.12017 3.46248 25 - - 1.38629 1.38629 1.38629 1.38629 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547 26 0.14547 3.35358 2.78456 3.25273 26 - - 1.38629 1.38629 1.38629 1.38629 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547 27 0.14547 3.35358 2.78456 3.25273 27 - - 1.38629 1.38629 1.38629 1.38629 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547 28 3.40234 0.13394 3.45309 2.80654 28 - - 1.38629 1.38629 1.38629 1.38629 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547 29 3.40234 0.13394 3.45309 2.80654 29 - - 1.38629 1.38629 1.38629 1.38629 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547 30 3.06176 2.57805 3.11093 0.18307 30 - - 1.38629 1.38629 1.38629 1.38629 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547 31 2.92882 3.56061 0.12017 3.46248 31 - - 1.38629 1.38629 1.38629 1.38629 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547 32 3.40234 0.13394 3.45309 2.80654 32 - - 1.38629 1.38629 1.38629 1.38629 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547 33 2.92882 3.56061 0.12017 3.46248 33 - - 1.38629 1.38629 1.38629 1.38629 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547 34 2.92882 3.56061 0.12017 3.46248 34 - - 1.38629 1.38629 1.38629 1.38629 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547 35 0.14547 3.35358 2.78456 3.25273 35 - - 1.38629 1.38629 1.38629 1.38629 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547 36 2.92882 3.56061 0.12017 3.46248 36 - - 1.38629 1.38629 1.38629 1.38629 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547 37 2.92882 3.56061 0.12017 3.46248 37 - - 1.38629 1.38629 1.38629 1.38629 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547 38 2.92882 3.56061 0.12017 3.46248 38 - - 1.38629 1.38629 1.38629 1.38629 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547 39 0.14547 3.35358 2.78456 3.25273 39 - - 1.38629 1.38629 1.38629 1.38629 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547 40 3.06176 2.57805 3.11093 0.18307 40 - - 1.38629 1.38629 1.38629 1.38629 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547 41 3.40234 0.13394 3.45309 2.80654 41 - - 1.38629 1.38629 1.38629 1.38629 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547 42 0.14547 3.35358 2.78456 3.25273 42 - - 1.38629 1.38629 1.38629 1.38629 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547 43 3.06176 2.57805 3.11093 0.18307 43 - - 1.38629 1.38629 1.38629 1.38629 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547 44 3.06176 2.57805 3.11093 0.18307 44 - - 1.38629 1.38629 1.38629 1.38629 0.03745 3.99645 3.99645 1.46634 0.26236 1.09861 0.40547 45 0.26665 2.85378 2.54466 2.32346 45 - - 1.38629 1.38629 1.38629 1.38629 0.01890 3.97790 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 1_SSU_Amoebozoa_1_SSU_end_oned_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 22:26:33 2012 NSEQ 14 EFFN 3.305176 CKSUM 2249141990 STATS LOCAL MSV -8.0858 0.71933 STATS LOCAL VITERBI -7.7838 0.71933 STATS LOCAL FORWARD -4.1454 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.27019 1.70539 1.30694 1.32098 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 0.00000 * 1 0.14264 3.37464 2.79827 3.27577 1 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 2 2.94360 3.58205 0.11779 3.48613 2 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 3 3.08294 2.59153 3.13131 0.17959 3 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 4 3.42663 0.13098 3.47636 2.82428 4 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 5 2.94360 3.58205 0.11779 3.48613 5 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 6 3.08294 2.59153 3.13131 0.17959 6 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 7 0.14264 3.37464 2.79827 3.27577 7 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 8 0.14264 3.37464 2.79827 3.27577 8 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 9 3.42663 0.13098 3.47636 2.82428 9 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 10 0.14264 3.37464 2.79827 3.27577 10 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 11 0.14264 3.37464 2.79827 3.27577 11 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 12 2.94360 3.58205 0.11779 3.48613 12 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 13 2.94360 3.58205 0.11779 3.48613 13 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 14 3.08294 2.59153 3.13131 0.17959 14 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 15 0.14264 3.37464 2.79827 3.27577 15 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 16 0.14264 3.37464 2.79827 3.27577 16 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 17 2.89328 2.16089 2.94852 0.25236 17 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 18 3.42663 0.13098 3.47636 2.82428 18 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 19 2.94360 3.58205 0.11779 3.48613 19 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 20 3.08294 2.59153 3.13131 0.17959 20 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 21 0.14264 3.37464 2.79827 3.27577 21 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 22 2.94360 3.58205 0.11779 3.48613 22 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 23 2.94360 3.58205 0.11779 3.48613 23 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 24 3.08294 2.59153 3.13131 0.17959 24 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 25 2.94360 3.58205 0.11779 3.48613 25 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 26 0.14264 3.37464 2.79827 3.27577 26 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 27 0.14264 3.37464 2.79827 3.27577 27 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 28 3.42663 0.13098 3.47636 2.82428 28 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 29 3.42663 0.13098 3.47636 2.82428 29 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 30 3.08294 2.59153 3.13131 0.17959 30 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 31 2.94360 3.58205 0.11779 3.48613 31 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 32 3.42663 0.13098 3.47636 2.82428 32 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 33 2.94360 3.58205 0.11779 3.48613 33 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 34 3.08294 2.59153 3.13131 0.17959 34 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 35 3.08294 2.59153 3.13131 0.17959 35 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 36 3.08294 2.59153 3.13131 0.17959 36 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 37 2.94360 3.58205 0.11779 3.48613 37 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 38 2.94360 3.58205 0.11779 3.48613 38 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 39 0.14264 3.37464 2.79827 3.27577 39 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 40 3.08294 2.59153 3.13131 0.17959 40 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 41 3.42663 0.13098 3.47636 2.82428 41 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 42 0.14264 3.37464 2.79827 3.27577 42 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 43 3.08294 2.59153 3.13131 0.17959 43 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 44 3.08294 2.59153 3.13131 0.17959 44 - - 1.38629 1.38629 1.38629 1.38629 0.03701 4.00827 4.00827 1.46634 0.26236 1.09861 0.40547 45 0.14264 3.37464 2.79827 3.27577 45 - - 1.38629 1.38629 1.38629 1.38629 0.01867 3.98994 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 1_SSU_Amoebozoa_1_SSU_end_threea_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 22:27:31 2012 NSEQ 16 EFFN 3.175781 CKSUM 572948826 STATS LOCAL MSV -8.0370 0.71932 STATS LOCAL VITERBI -7.7288 0.71932 STATS LOCAL FORWARD -4.0261 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.15962 1.55332 1.24723 1.67370 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 0.00000 * 1 0.14843 3.33206 2.77050 3.22920 1 - - 1.38629 1.38629 1.38629 1.38629 0.07696 3.98449 2.89186 1.46634 0.26236 1.09861 0.40547 2 2.86397 3.46759 0.13121 3.36018 2 - - 1.38629 1.38629 1.38629 1.38629 0.03939 3.94692 3.94692 1.46634 0.26236 0.51322 0.91271 3 3.04021 2.56430 3.09020 0.18668 3 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 4 3.37748 0.13704 3.42926 2.78832 4 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 5 2.91360 3.53861 0.12268 3.43825 5 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 6 3.04021 2.56430 3.09020 0.18668 6 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 7 0.14843 3.33206 2.77050 3.22920 7 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 8 0.14843 3.33206 2.77050 3.22920 8 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 9 3.37748 0.13704 3.42926 2.78832 9 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 10 0.14843 3.33206 2.77050 3.22920 10 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 11 0.14843 3.33206 2.77050 3.22920 11 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 12 2.91360 3.53861 0.12268 3.43825 12 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 13 2.91360 3.53861 0.12268 3.43825 13 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 14 3.04021 2.56430 3.09020 0.18668 14 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 15 0.14843 3.33206 2.77050 3.22920 15 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 16 3.04021 2.56430 3.09020 0.18668 16 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 17 3.37748 0.13704 3.42926 2.78832 17 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 18 3.37748 0.13704 3.42926 2.78832 18 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 19 2.91360 3.53861 0.12268 3.43825 19 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 20 3.04021 2.56430 3.09020 0.18668 20 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 21 0.14843 3.33206 2.77050 3.22920 21 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 22 2.91360 3.53861 0.12268 3.43825 22 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 23 2.91360 3.53861 0.12268 3.43825 23 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 24 3.04021 2.56430 3.09020 0.18668 24 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 25 2.91360 3.53861 0.12268 3.43825 25 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 26 0.14843 3.33206 2.77050 3.22920 26 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 27 0.14843 3.33206 2.77050 3.22920 27 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 28 3.37748 0.13704 3.42926 2.78832 28 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 29 3.37748 0.13704 3.42926 2.78832 29 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 30 3.04021 2.56430 3.09020 0.18668 30 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 31 2.91360 3.53861 0.12268 3.43825 31 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 32 3.37748 0.13704 3.42926 2.78832 32 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 33 0.14843 3.33206 2.77050 3.22920 33 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 34 2.91360 3.53861 0.12268 3.43825 34 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 35 0.14843 3.33206 2.77050 3.22920 35 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 36 0.14843 3.33206 2.77050 3.22920 36 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 37 2.91360 3.53861 0.12268 3.43825 37 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 38 2.91360 3.53861 0.12268 3.43825 38 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 39 0.14843 3.33206 2.77050 3.22920 39 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 40 3.04021 2.56430 3.09020 0.18668 40 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 41 3.37748 0.13704 3.42926 2.78832 41 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 42 0.14843 3.33206 2.77050 3.22920 42 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 43 0.14843 3.33206 2.77050 3.22920 43 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 44 2.91360 3.53861 0.12268 3.43825 44 - - 1.38629 1.38629 1.38629 1.38629 0.03791 3.98449 3.98449 1.46634 0.26236 1.09861 0.40547 45 3.37748 0.13704 3.42926 2.78832 45 - - 1.38629 1.38629 1.38629 1.38629 0.01914 3.96571 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 1_SSU_Amoebozoa_1_SSU_end_threeb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 22:27:37 2012 NSEQ 3 EFFN 3.000000 CKSUM 479671279 STATS LOCAL MSV -7.9995 0.72030 STATS LOCAL VITERBI -7.7571 0.72030 STATS LOCAL FORWARD -4.0868 0.72030 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.33393 1.61825 1.24860 1.38068 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 0.15719 3.27118 2.73043 3.16274 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 2.86982 3.47591 0.13017 3.36931 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 2.97980 2.52563 3.03204 0.19727 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 3.30705 0.14631 3.36166 2.73626 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 2.86982 3.47591 0.13017 3.36931 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 2.97980 2.52563 3.03204 0.19727 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 0.15719 3.27118 2.73043 3.16274 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 0.15719 3.27118 2.73043 3.16274 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 3.30705 0.14631 3.36166 2.73626 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 0.15719 3.27118 2.73043 3.16274 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 0.15719 3.27118 2.73043 3.16274 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 2.86982 3.47591 0.13017 3.36931 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 2.86982 3.47591 0.13017 3.36931 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 2.97980 2.52563 3.03204 0.19727 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 0.15719 3.27118 2.73043 3.16274 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 2.97980 2.52563 3.03204 0.19727 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 3.30705 0.14631 3.36166 2.73626 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 3.30705 0.14631 3.36166 2.73626 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 2.86982 3.47591 0.13017 3.36931 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 2.97980 2.52563 3.03204 0.19727 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 0.15719 3.27118 2.73043 3.16274 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 2.86982 3.47591 0.13017 3.36931 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 2.86982 3.47591 0.13017 3.36931 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 2.97980 2.52563 3.03204 0.19727 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 2.86982 3.47591 0.13017 3.36931 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 0.15719 3.27118 2.73043 3.16274 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 0.15719 3.27118 2.73043 3.16274 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 3.30705 0.14631 3.36166 2.73626 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 3.30705 0.14631 3.36166 2.73626 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 2.97980 2.52563 3.03204 0.19727 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 2.86982 3.47591 0.13017 3.36931 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 3.30705 0.14631 3.36166 2.73626 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 2.86982 3.47591 0.13017 3.36931 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 2.86982 3.47591 0.13017 3.36931 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 0.15719 3.27118 2.73043 3.16274 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 2.97980 2.52563 3.03204 0.19727 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 2.86982 3.47591 0.13017 3.36931 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 2.86982 3.47591 0.13017 3.36931 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 0.15719 3.27118 2.73043 3.16274 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 2.97980 2.52563 3.03204 0.19727 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 3.30705 0.14631 3.36166 2.73626 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 0.15719 3.27118 2.73043 3.16274 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 2.97980 2.52563 3.03204 0.19727 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 2.97980 2.52563 3.03204 0.19727 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 2.97980 2.52563 3.03204 0.19727 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 1_SSU_Amoebozoa_1_SSU_end_threec_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 22:27:43 2012 NSEQ 5 EFFN 3.247070 CKSUM 3545515269 STATS LOCAL MSV -8.0553 0.71931 STATS LOCAL VITERBI -7.6960 0.71931 STATS LOCAL FORWARD -4.1589 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.33344 1.62254 1.24775 1.37878 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 0.00000 * 1 0.14518 3.35575 2.78597 3.25510 1 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 2 2.93035 3.56282 0.11992 3.46492 2 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 3 3.06393 2.57943 3.11303 0.18271 3 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 4 3.40484 0.13363 3.45549 2.80837 4 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 5 2.93035 3.56282 0.11992 3.46492 5 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 6 3.06393 2.57943 3.11303 0.18271 6 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 7 0.14518 3.35575 2.78597 3.25510 7 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 8 0.14518 3.35575 2.78597 3.25510 8 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 9 3.40484 0.13363 3.45549 2.80837 9 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 10 0.14518 3.35575 2.78597 3.25510 10 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 11 0.14518 3.35575 2.78597 3.25510 11 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 12 2.93035 3.56282 0.11992 3.46492 12 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 13 2.93035 3.56282 0.11992 3.46492 13 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 14 3.06393 2.57943 3.11303 0.18271 14 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 15 0.14518 3.35575 2.78597 3.25510 15 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 16 3.06393 2.57943 3.11303 0.18271 16 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 17 3.40484 0.13363 3.45549 2.80837 17 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 18 3.40484 0.13363 3.45549 2.80837 18 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 19 2.93035 3.56282 0.11992 3.46492 19 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 20 3.06393 2.57943 3.11303 0.18271 20 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 21 0.14518 3.35575 2.78597 3.25510 21 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 22 2.93035 3.56282 0.11992 3.46492 22 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 23 2.93035 3.56282 0.11992 3.46492 23 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 24 3.06393 2.57943 3.11303 0.18271 24 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 25 2.93035 3.56282 0.11992 3.46492 25 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 26 0.14518 3.35575 2.78597 3.25510 26 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 27 0.14518 3.35575 2.78597 3.25510 27 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 28 3.40484 0.13363 3.45549 2.80837 28 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 29 3.40484 0.13363 3.45549 2.80837 29 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 30 3.06393 2.57943 3.11303 0.18271 30 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 31 2.93035 3.56282 0.11992 3.46492 31 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 32 3.40484 0.13363 3.45549 2.80837 32 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 33 2.93035 3.56282 0.11992 3.46492 33 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 34 2.93035 3.56282 0.11992 3.46492 34 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 35 0.14518 3.35575 2.78597 3.25510 35 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 36 3.06393 2.57943 3.11303 0.18271 36 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 37 2.93035 3.56282 0.11992 3.46492 37 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 38 2.93035 3.56282 0.11992 3.46492 38 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 39 0.14518 3.35575 2.78597 3.25510 39 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 40 3.06393 2.57943 3.11303 0.18271 40 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 41 3.40484 0.13363 3.45549 2.80837 41 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 42 0.14518 3.35575 2.78597 3.25510 42 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 43 3.06393 2.57943 3.11303 0.18271 43 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 44 3.06393 2.57943 3.11303 0.18271 44 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 45 3.06393 2.57943 3.11303 0.18271 45 - - 1.38629 1.38629 1.38629 1.38629 0.01888 3.97913 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 1_SSU_Amoebozoa_1_SSU_end_two_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 20 22:27:08 2012 NSEQ 71 EFFN 3.375793 CKSUM 1469632365 STATS LOCAL MSV -7.4121 0.71932 STATS LOCAL VITERBI -7.6514 0.71932 STATS LOCAL FORWARD -4.1516 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.32611 1.62738 1.24904 1.38123 1.38629 1.38629 1.38629 1.38629 0.03653 4.02102 4.02102 1.46634 0.26236 0.00000 * 1 0.13969 3.39712 2.81286 3.30038 1 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547 2 2.95925 3.60483 0.11531 3.51128 2 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547 3 3.10566 2.60598 3.15316 0.17595 3 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547 4 3.45252 0.12792 3.50115 2.84311 4 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547 5 2.95925 3.60483 0.11531 3.51128 5 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547 6 3.10566 2.60598 3.15316 0.17595 6 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547 7 0.13969 3.39712 2.81286 3.30038 7 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547 8 0.13969 3.39712 2.81286 3.30038 8 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547 9 3.45252 0.12792 3.50115 2.84311 9 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547 10 0.13969 3.39712 2.81286 3.30038 10 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547 11 0.13969 3.39712 2.81286 3.30038 11 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547 12 2.95925 3.60483 0.11531 3.51128 12 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547 13 2.95925 3.60483 0.11531 3.51128 13 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547 14 3.10566 2.60598 3.15316 0.17595 14 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547 15 0.13969 3.39712 2.81286 3.30038 15 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547 16 3.10566 2.60598 3.15316 0.17595 16 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547 17 3.45252 0.12792 3.50115 2.84311 17 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547 18 2.95186 0.22451 2.63110 2.56592 18 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547 19 2.95925 3.60483 0.11531 3.51128 19 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547 20 3.10566 2.60598 3.15316 0.17595 20 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547 21 0.13969 3.39712 2.81286 3.30038 21 - - 1.38629 1.38629 1.38629 1.38629 0.05378 4.02102 3.36902 1.46634 0.26236 1.09861 0.40547 22 2.93878 3.57505 0.11856 3.47840 22 - - 1.38629 1.38629 1.38629 1.38629 0.03715 4.00439 4.00439 1.46634 0.26236 0.71393 0.67279 23 2.95925 3.60483 0.11531 3.51128 23 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547 24 3.10566 2.60598 3.15316 0.17595 24 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547 25 2.95925 3.60483 0.11531 3.51128 25 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547 26 0.13969 3.39712 2.81286 3.30038 26 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547 27 0.13969 3.39712 2.81286 3.30038 27 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547 28 3.45252 0.12792 3.50115 2.84311 28 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547 29 3.45252 0.12792 3.50115 2.84311 29 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547 30 3.10566 2.60598 3.15316 0.17595 30 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547 31 2.95925 3.60483 0.11531 3.51128 31 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547 32 3.45252 0.12792 3.50115 2.84311 32 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547 33 2.71968 2.72902 0.19871 3.01523 33 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547 34 2.95925 3.60483 0.11531 3.51128 34 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547 35 0.13969 3.39712 2.81286 3.30038 35 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547 36 3.10566 2.60598 3.15316 0.17595 36 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547 37 2.95925 3.60483 0.11531 3.51128 37 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547 38 2.95925 3.60483 0.11531 3.51128 38 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547 39 0.13969 3.39712 2.81286 3.30038 39 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547 40 3.10566 2.60598 3.15316 0.17595 40 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547 41 3.45252 0.12792 3.50115 2.84311 41 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547 42 0.13969 3.39712 2.81286 3.30038 42 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547 43 3.10566 2.60598 3.15316 0.17595 43 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547 44 3.10566 2.60598 3.15316 0.17595 44 - - 1.38629 1.38629 1.38629 1.38629 0.03653 4.02102 4.02102 1.46634 0.26236 1.09861 0.40547 45 2.33315 2.44141 2.77551 0.28282 45 - - 1.38629 1.38629 1.38629 1.38629 0.01843 4.00292 * 1.46634 0.26236 0.00000 * //