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view ITSx_db/HMMs/G.hmm @ 0:f82c70f54bd7 draft
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| author | okorol |
|---|---|
| date | Tue, 24 Mar 2015 12:02:48 -0400 |
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HMMER3/b [3.0 | March 2010] NAME 3_End_Chlorophyta_58S_end_eight_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 28 01:06:57 2012 NSEQ 8 EFFN 3.128906 CKSUM 1519682346 STATS LOCAL MSV -8.1109 0.71934 STATS LOCAL VITERBI -7.7889 0.71934 STATS LOCAL FORWARD -3.6308 0.71934 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 2.06483 0.95712 1.26884 1.57019 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 0.00000 * 1 3.35912 0.13939 3.41165 2.77481 1 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 2 2.90228 3.52232 0.12458 3.42031 2 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 3 3.35912 0.13939 3.41165 2.77481 3 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 4 3.35912 0.13939 3.41165 2.77481 4 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 5 3.35912 0.13939 3.41165 2.77481 5 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 6 3.35912 0.13939 3.41165 2.77481 6 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 7 0.15066 3.31617 2.76009 3.21184 7 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 8 3.35912 0.13939 3.41165 2.77481 8 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 9 2.90228 3.52232 0.12458 3.42031 9 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 10 2.90228 3.52232 0.12458 3.42031 10 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 11 3.35912 0.13939 3.41165 2.77481 11 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 12 3.35912 0.13939 3.41165 2.77481 12 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 13 3.02437 2.55419 3.07496 0.18939 13 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 14 3.35912 0.13939 3.41165 2.77481 14 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 15 2.90228 3.52232 0.12458 3.42031 15 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 16 2.90228 3.52232 0.12458 3.42031 16 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 17 3.35912 0.13939 3.41165 2.77481 17 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 18 3.35912 0.13939 3.41165 2.77481 18 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 19 3.35912 0.13939 3.41165 2.77481 19 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 20 0.15066 3.31617 2.76009 3.21184 20 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 21 2.90228 3.52232 0.12458 3.42031 21 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 22 2.90228 3.52232 0.12458 3.42031 22 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 23 2.90228 3.52232 0.12458 3.42031 23 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 24 3.35912 0.13939 3.41165 2.77481 24 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 25 0.15066 3.31617 2.76009 3.21184 25 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 26 3.02437 2.55419 3.07496 0.18939 26 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 27 2.90228 3.52232 0.12458 3.42031 27 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 28 3.02437 2.55419 3.07496 0.18939 28 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 29 3.35912 0.13939 3.41165 2.77481 29 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 30 3.02437 2.55419 3.07496 0.18939 30 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 31 2.90228 3.52232 0.12458 3.42031 31 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 32 3.35912 0.13939 3.41165 2.77481 32 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 33 3.35912 0.13939 3.41165 2.77481 33 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 34 3.02437 2.55419 3.07496 0.18939 34 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 35 3.35912 0.13939 3.41165 2.77481 35 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 36 0.15066 3.31617 2.76009 3.21184 36 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 37 2.90228 3.52232 0.12458 3.42031 37 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 38 3.35912 0.13939 3.41165 2.77481 38 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 39 2.90228 3.52232 0.12458 3.42031 39 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 40 3.02437 2.55419 3.07496 0.18939 40 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 41 3.35912 0.13939 3.41165 2.77481 41 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 42 3.02437 2.55419 3.07496 0.18939 42 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 43 2.90228 3.52232 0.12458 3.42031 43 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 44 3.02437 2.55419 3.07496 0.18939 44 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 45 3.02437 2.55419 3.07496 0.18939 45 - - 1.38629 1.38629 1.38629 1.38629 0.01931 3.95679 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Chlorophyta_58S_end_elevena_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 28 01:08:11 2012 NSEQ 2 EFFN 2.000000 CKSUM 3760142231 STATS LOCAL MSV -7.7134 0.72708 STATS LOCAL VITERBI -8.1835 0.72708 STATS LOCAL FORWARD -2.9945 0.72708 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.66783 1.20179 1.12165 1.68770 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.53331 3.02441 0.20344 2.88069 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.81865 0.23582 2.88868 2.35662 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.53331 3.02441 0.20344 2.88069 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.81865 0.23582 2.88868 2.35662 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.81865 0.23582 2.88868 2.35662 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.53331 3.02441 0.20344 2.88069 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 0.23862 2.84929 2.43386 2.70756 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.81865 0.23582 2.88868 2.35662 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.57915 2.25909 2.64442 0.28946 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.57915 2.25909 2.64442 0.28946 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 0.23862 2.84929 2.43386 2.70756 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.81865 0.23582 2.88868 2.35662 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 0.23862 2.84929 2.43386 2.70756 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.53331 3.02441 0.20344 2.88069 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.81865 0.23582 2.88868 2.35662 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.81865 0.23582 2.88868 2.35662 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.53331 3.02441 0.20344 2.88069 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.57915 2.25909 2.64442 0.28946 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.81865 0.23582 2.88868 2.35662 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.23862 2.84929 2.43386 2.70756 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Chlorophyta_58S_end_elevenb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 28 01:08:17 2012 NSEQ 4 EFFN 3.167969 CKSUM 1059924513 STATS LOCAL MSV -8.1569 0.71931 STATS LOCAL VITERBI -7.6314 0.71931 STATS LOCAL FORWARD -3.5156 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.71647 1.25486 0.99125 1.80746 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 0.00000 * 1 2.91173 3.53592 0.12299 3.43528 1 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 2 3.37444 0.13743 3.42635 2.78609 2 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 3 2.91173 3.53592 0.12299 3.43528 3 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 4 3.37444 0.13743 3.42635 2.78609 4 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 5 3.37444 0.13743 3.42635 2.78609 5 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 6 3.37444 0.13743 3.42635 2.78609 6 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 7 2.91173 3.53592 0.12299 3.43528 7 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 8 0.14880 3.32943 2.76878 3.22633 8 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 9 2.91173 3.53592 0.12299 3.43528 9 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 10 2.91173 3.53592 0.12299 3.43528 10 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 11 3.03758 2.56263 3.08768 0.18713 11 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 12 2.37754 0.96254 2.45003 0.82323 12 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 13 3.03758 2.56263 3.08768 0.18713 13 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 14 0.14880 3.32943 2.76878 3.22633 14 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 15 2.91173 3.53592 0.12299 3.43528 15 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 16 2.91173 3.53592 0.12299 3.43528 16 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 17 3.37444 0.13743 3.42635 2.78609 17 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 18 3.37444 0.13743 3.42635 2.78609 18 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 19 0.14880 3.32943 2.76878 3.22633 19 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 20 0.14880 3.32943 2.76878 3.22633 20 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 21 2.91173 3.53592 0.12299 3.43528 21 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 22 2.91173 3.53592 0.12299 3.43528 22 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 23 2.91173 3.53592 0.12299 3.43528 23 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 24 3.37444 0.13743 3.42635 2.78609 24 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 25 0.14880 3.32943 2.76878 3.22633 25 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 26 3.03758 2.56263 3.08768 0.18713 26 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 27 2.91173 3.53592 0.12299 3.43528 27 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 28 2.91173 3.53592 0.12299 3.43528 28 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 29 3.37444 0.13743 3.42635 2.78609 29 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 30 3.03758 2.56263 3.08768 0.18713 30 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 31 2.91173 3.53592 0.12299 3.43528 31 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 32 2.91173 3.53592 0.12299 3.43528 32 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 33 3.37444 0.13743 3.42635 2.78609 33 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 34 3.03758 2.56263 3.08768 0.18713 34 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 35 3.37444 0.13743 3.42635 2.78609 35 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 36 0.14880 3.32943 2.76878 3.22633 36 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 37 2.91173 3.53592 0.12299 3.43528 37 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 38 3.37444 0.13743 3.42635 2.78609 38 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 39 2.91173 3.53592 0.12299 3.43528 39 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 40 3.03758 2.56263 3.08768 0.18713 40 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 41 3.37444 0.13743 3.42635 2.78609 41 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 42 2.91173 3.53592 0.12299 3.43528 42 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 43 0.14880 3.32943 2.76878 3.22633 43 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 44 3.37444 0.13743 3.42635 2.78609 44 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 45 2.91173 3.53592 0.12299 3.43528 45 - - 1.38629 1.38629 1.38629 1.38629 0.01917 3.96423 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Chlorophyta_58S_end_fifteen_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 28 01:09:22 2012 NSEQ 2 EFFN 2.000000 CKSUM 3206328775 STATS LOCAL MSV -7.4469 0.72804 STATS LOCAL VITERBI -8.2249 0.72804 STATS LOCAL FORWARD -3.6506 0.72804 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.66019 1.45155 1.21279 1.27898 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.53331 3.02441 0.20344 2.88069 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.81865 0.23582 2.88868 2.35662 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.53331 3.02441 0.20344 2.88069 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.81865 0.23582 2.88868 2.35662 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.81865 0.23582 2.88868 2.35662 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.57915 2.25909 2.64442 0.28946 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.57915 2.25909 2.64442 0.28946 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.57915 2.25909 2.64442 0.28946 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.53331 3.02441 0.20344 2.88069 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.57915 2.25909 2.64442 0.28946 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23862 2.84929 2.43386 2.70756 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.57915 2.25909 2.64442 0.28946 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.81865 0.23582 2.88868 2.35662 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.53331 3.02441 0.20344 2.88069 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 0.23862 2.84929 2.43386 2.70756 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.57915 2.25909 2.64442 0.28946 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.53331 3.02441 0.20344 2.88069 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.23862 2.84929 2.43386 2.70756 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.57915 2.25909 2.64442 0.28946 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.53331 3.02441 0.20344 2.88069 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.23862 2.84929 2.43386 2.70756 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Chlorophyta_58S_end_five_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 28 01:06:30 2012 NSEQ 6 EFFN 3.219727 CKSUM 399550701 STATS LOCAL MSV -8.3017 0.71932 STATS LOCAL VITERBI -7.6964 0.71932 STATS LOCAL FORWARD -3.8371 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.66847 1.15405 1.18562 1.65782 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 0.00000 * 1 2.92399 3.55362 0.12096 3.45477 1 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 2 3.39443 0.13492 3.44551 2.80075 2 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 3 2.92399 3.55362 0.12096 3.45477 3 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 4 2.92399 3.55362 0.12096 3.45477 4 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 5 3.05488 2.57367 3.10432 0.18421 5 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 6 3.39443 0.13492 3.44551 2.80075 6 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 7 2.92399 3.55362 0.12096 3.45477 7 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 8 0.14640 3.34673 2.78009 3.24524 8 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 9 2.92399 3.55362 0.12096 3.45477 9 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 10 2.92399 3.55362 0.12096 3.45477 10 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 11 3.39443 0.13492 3.44551 2.80075 11 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 12 3.05488 2.57367 3.10432 0.18421 12 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 13 3.05488 2.57367 3.10432 0.18421 13 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 14 3.39443 0.13492 3.44551 2.80075 14 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 15 2.92399 3.55362 0.12096 3.45477 15 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 16 2.92399 3.55362 0.12096 3.45477 16 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 17 3.39443 0.13492 3.44551 2.80075 17 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 18 3.39443 0.13492 3.44551 2.80075 18 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 19 0.52608 2.60866 1.38344 2.46821 19 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 20 0.14640 3.34673 2.78009 3.24524 20 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 21 2.92399 3.55362 0.12096 3.45477 21 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 22 0.14640 3.34673 2.78009 3.24524 22 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 23 3.39443 0.13492 3.44551 2.80075 23 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 24 3.39443 0.13492 3.44551 2.80075 24 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 25 0.14640 3.34673 2.78009 3.24524 25 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 26 3.05488 2.57367 3.10432 0.18421 26 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 27 2.92399 3.55362 0.12096 3.45477 27 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 28 3.39443 0.13492 3.44551 2.80075 28 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 29 3.39443 0.13492 3.44551 2.80075 29 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 30 3.05488 2.57367 3.10432 0.18421 30 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 31 2.92399 3.55362 0.12096 3.45477 31 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 32 3.39443 0.13492 3.44551 2.80075 32 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 33 3.39443 0.13492 3.44551 2.80075 33 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 34 3.05488 2.57367 3.10432 0.18421 34 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 35 3.39443 0.13492 3.44551 2.80075 35 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 36 0.14640 3.34673 2.78009 3.24524 36 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 37 2.92399 3.55362 0.12096 3.45477 37 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 38 3.39443 0.13492 3.44551 2.80075 38 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 39 2.92399 3.55362 0.12096 3.45477 39 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 40 3.05488 2.57367 3.10432 0.18421 40 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 41 3.39443 0.13492 3.44551 2.80075 41 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 42 2.92399 3.55362 0.12096 3.45477 42 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 43 3.05488 2.57367 3.10432 0.18421 43 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 44 0.14640 3.34673 2.78009 3.24524 44 - - 1.38629 1.38629 1.38629 1.38629 0.03760 3.99263 3.99263 1.46634 0.26236 1.09861 0.40547 45 0.14640 3.34673 2.78009 3.24524 45 - - 1.38629 1.38629 1.38629 1.38629 0.01898 3.97401 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Chlorophyta_58S_end_foura_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 28 01:05:16 2012 NSEQ 52 EFFN 3.449951 CKSUM 881486621 STATS LOCAL MSV -7.1698 0.71931 STATS LOCAL VITERBI -7.5850 0.71931 STATS LOCAL FORWARD -3.9589 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.85538 1.20465 1.09209 1.56880 1.38629 1.38629 1.38629 1.38629 0.03604 4.03423 4.03423 1.46634 0.26236 0.00000 * 1 2.97515 3.62808 0.11284 3.53697 1 - - 1.38629 1.38629 1.38629 1.38629 0.03604 4.03423 4.03423 1.46634 0.26236 1.09861 0.40547 2 3.47902 0.12486 3.52651 2.86230 2 - - 1.38629 1.38629 1.38629 1.38629 0.03604 4.03423 4.03423 1.46634 0.26236 1.09861 0.40547 3 2.97515 3.62808 0.11284 3.53697 3 - - 1.38629 1.38629 1.38629 1.38629 0.03604 4.03423 4.03423 1.46634 0.26236 1.09861 0.40547 4 3.25787 0.15953 3.10244 2.74811 4 - - 1.38629 1.38629 1.38629 1.38629 0.03604 4.03423 4.03423 1.46634 0.26236 1.09861 0.40547 5 3.12906 2.62084 3.17566 0.17229 5 - - 1.38629 1.38629 1.38629 1.38629 0.03604 4.03423 4.03423 1.46634 0.26236 1.09861 0.40547 6 3.30543 0.16321 3.35847 2.53684 6 - - 1.38629 1.38629 1.38629 1.38629 0.03604 4.03423 4.03423 1.46634 0.26236 1.09861 0.40547 7 2.97515 3.62808 0.11284 3.53697 7 - - 1.38629 1.38629 1.38629 1.38629 0.03604 4.03423 4.03423 1.46634 0.26236 1.09861 0.40547 8 0.26092 2.40692 2.57632 2.75649 8 - - 1.38629 1.38629 1.38629 1.38629 0.03604 4.03423 4.03423 1.46634 0.26236 1.09861 0.40547 9 2.97515 3.62808 0.11284 3.53697 9 - - 1.38629 1.38629 1.38629 1.38629 0.03604 4.03423 4.03423 1.46634 0.26236 1.09861 0.40547 10 2.97515 3.62808 0.11284 3.53697 10 - - 1.38629 1.38629 1.38629 1.38629 0.03604 4.03423 4.03423 1.46634 0.26236 1.09861 0.40547 11 3.47902 0.12486 3.52651 2.86230 11 - - 1.38629 1.38629 1.38629 1.38629 0.03604 4.03423 4.03423 1.46634 0.26236 1.09861 0.40547 12 2.96985 2.24779 3.02247 0.23020 12 - - 1.38629 1.38629 1.38629 1.38629 0.03604 4.03423 4.03423 1.46634 0.26236 1.09861 0.40547 13 3.12906 2.62084 3.17566 0.17229 13 - - 1.38629 1.38629 1.38629 1.38629 0.03604 4.03423 4.03423 1.46634 0.26236 1.09861 0.40547 14 3.47902 0.12486 3.52651 2.86230 14 - - 1.38629 1.38629 1.38629 1.38629 0.03604 4.03423 4.03423 1.46634 0.26236 1.09861 0.40547 15 2.97515 3.62808 0.11284 3.53697 15 - - 1.38629 1.38629 1.38629 1.38629 0.03604 4.03423 4.03423 1.46634 0.26236 1.09861 0.40547 16 2.97515 3.62808 0.11284 3.53697 16 - - 1.38629 1.38629 1.38629 1.38629 0.03604 4.03423 4.03423 1.46634 0.26236 1.09861 0.40547 17 3.47902 0.12486 3.52651 2.86230 17 - - 1.38629 1.38629 1.38629 1.38629 0.03604 4.03423 4.03423 1.46634 0.26236 1.09861 0.40547 18 3.26534 0.17321 3.31968 2.46875 18 - - 1.38629 1.38629 1.38629 1.38629 0.03604 4.03423 4.03423 1.46634 0.26236 1.09861 0.40547 19 0.25046 3.05864 2.10513 2.94170 19 - - 1.38629 1.38629 1.38629 1.38629 0.03604 4.03423 4.03423 1.46634 0.26236 1.09861 0.40547 20 0.13674 3.42016 2.82777 3.32563 20 - - 1.38629 1.38629 1.38629 1.38629 0.03604 4.03423 4.03423 1.46634 0.26236 1.09861 0.40547 21 2.97515 3.62808 0.11284 3.53697 21 - - 1.38629 1.38629 1.38629 1.38629 0.03604 4.03423 4.03423 1.46634 0.26236 1.09861 0.40547 22 0.17981 3.26289 2.47875 3.15944 22 - - 1.38629 1.38629 1.38629 1.38629 0.03604 4.03423 4.03423 1.46634 0.26236 1.09861 0.40547 23 2.97515 3.62808 0.11284 3.53697 23 - - 1.38629 1.38629 1.38629 1.38629 0.03604 4.03423 4.03423 1.46634 0.26236 1.09861 0.40547 24 3.47902 0.12486 3.52651 2.86230 24 - - 1.38629 1.38629 1.38629 1.38629 0.03604 4.03423 4.03423 1.46634 0.26236 1.09861 0.40547 25 0.13674 3.42016 2.82777 3.32563 25 - - 1.38629 1.38629 1.38629 1.38629 0.03604 4.03423 4.03423 1.46634 0.26236 1.09861 0.40547 26 3.12906 2.62084 3.17566 0.17229 26 - - 1.38629 1.38629 1.38629 1.38629 0.03604 4.03423 4.03423 1.46634 0.26236 1.09861 0.40547 27 2.97515 3.62808 0.11284 3.53697 27 - - 1.38629 1.38629 1.38629 1.38629 0.03604 4.03423 4.03423 1.46634 0.26236 1.09861 0.40547 28 3.12906 2.62084 3.17566 0.17229 28 - - 1.38629 1.38629 1.38629 1.38629 0.03604 4.03423 4.03423 1.46634 0.26236 1.09861 0.40547 29 3.27834 0.16991 3.33226 2.49063 29 - - 1.38629 1.38629 1.38629 1.38629 0.03604 4.03423 4.03423 1.46634 0.26236 1.09861 0.40547 30 3.12906 2.62084 3.17566 0.17229 30 - - 1.38629 1.38629 1.38629 1.38629 0.03604 4.03423 4.03423 1.46634 0.26236 1.09861 0.40547 31 2.97515 3.62808 0.11284 3.53697 31 - - 1.38629 1.38629 1.38629 1.38629 0.03604 4.03423 4.03423 1.46634 0.26236 1.09861 0.40547 32 3.47902 0.12486 3.52651 2.86230 32 - - 1.38629 1.38629 1.38629 1.38629 0.03604 4.03423 4.03423 1.46634 0.26236 1.09861 0.40547 33 3.47902 0.12486 3.52651 2.86230 33 - - 1.38629 1.38629 1.38629 1.38629 0.03604 4.03423 4.03423 1.46634 0.26236 1.09861 0.40547 34 3.12906 2.62084 3.17566 0.17229 34 - - 1.38629 1.38629 1.38629 1.38629 0.03604 4.03423 4.03423 1.46634 0.26236 1.09861 0.40547 35 3.47902 0.12486 3.52651 2.86230 35 - - 1.38629 1.38629 1.38629 1.38629 0.03604 4.03423 4.03423 1.46634 0.26236 1.09861 0.40547 36 0.13674 3.42016 2.82777 3.32563 36 - - 1.38629 1.38629 1.38629 1.38629 0.03604 4.03423 4.03423 1.46634 0.26236 1.09861 0.40547 37 2.97515 3.62808 0.11284 3.53697 37 - - 1.38629 1.38629 1.38629 1.38629 0.03604 4.03423 4.03423 1.46634 0.26236 1.09861 0.40547 38 3.47902 0.12486 3.52651 2.86230 38 - - 1.38629 1.38629 1.38629 1.38629 0.03604 4.03423 4.03423 1.46634 0.26236 1.09861 0.40547 39 2.97515 3.62808 0.11284 3.53697 39 - - 1.38629 1.38629 1.38629 1.38629 0.03604 4.03423 4.03423 1.46634 0.26236 1.09861 0.40547 40 3.12906 2.62084 3.17566 0.17229 40 - - 1.38629 1.38629 1.38629 1.38629 0.03604 4.03423 4.03423 1.46634 0.26236 1.09861 0.40547 41 3.47902 0.12486 3.52651 2.86230 41 - - 1.38629 1.38629 1.38629 1.38629 0.03604 4.03423 4.03423 1.46634 0.26236 1.09861 0.40547 42 2.97515 3.62808 0.11284 3.53697 42 - - 1.38629 1.38629 1.38629 1.38629 0.03604 4.03423 4.03423 1.46634 0.26236 1.09861 0.40547 43 2.75118 2.78059 0.18930 3.06608 43 - - 1.38629 1.38629 1.38629 1.38629 0.03604 4.03423 4.03423 1.46634 0.26236 1.09861 0.40547 44 2.57620 2.90019 0.27021 2.24711 44 - - 1.38629 1.38629 1.38629 1.38629 0.03604 4.03423 4.03423 1.46634 0.26236 1.09861 0.40547 45 3.12906 2.62084 3.17566 0.17229 45 - - 1.38629 1.38629 1.38629 1.38629 0.01818 4.01637 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Chlorophyta_58S_end_fourb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 28 01:05:29 2012 NSEQ 17 EFFN 3.448975 CKSUM 2381245520 STATS LOCAL MSV -7.2708 0.71933 STATS LOCAL VITERBI -7.6530 0.71933 STATS LOCAL FORWARD -3.8073 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 2.03392 1.10636 1.05205 1.66496 1.38629 1.38629 1.38629 1.38629 0.03605 4.03406 4.03406 1.46634 0.26236 0.00000 * 1 2.97495 3.62778 0.11287 3.53664 1 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03406 4.03406 1.46634 0.26236 1.09861 0.40547 2 3.47868 0.12490 3.52618 2.86205 2 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03406 4.03406 1.46634 0.26236 1.09861 0.40547 3 2.97495 3.62778 0.11287 3.53664 3 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03406 4.03406 1.46634 0.26236 1.09861 0.40547 4 3.47868 0.12490 3.52618 2.86205 4 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03406 4.03406 1.46634 0.26236 1.09861 0.40547 5 3.47868 0.12490 3.52618 2.86205 5 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03406 4.03406 1.46634 0.26236 1.09861 0.40547 6 3.47868 0.12490 3.52618 2.86205 6 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03406 4.03406 1.46634 0.26236 1.09861 0.40547 7 1.76223 2.91429 0.33941 2.78215 7 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03406 4.03406 1.46634 0.26236 1.09861 0.40547 8 0.13678 3.41986 2.82758 3.32530 8 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03406 4.03406 1.46634 0.26236 1.09861 0.40547 9 2.97495 3.62778 0.11287 3.53664 9 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03406 4.03406 1.46634 0.26236 1.09861 0.40547 10 2.97495 3.62778 0.11287 3.53664 10 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03406 4.03406 1.46634 0.26236 1.09861 0.40547 11 3.47868 0.12490 3.52618 2.86205 11 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03406 4.03406 1.46634 0.26236 1.09861 0.40547 12 2.85079 2.00388 2.90799 0.28395 12 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03406 4.03406 1.46634 0.26236 1.09861 0.40547 13 2.83058 1.96405 2.88853 0.29427 13 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03406 4.03406 1.46634 0.26236 1.09861 0.40547 14 3.47868 0.12490 3.52618 2.86205 14 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03406 4.03406 1.46634 0.26236 1.09861 0.40547 15 2.97495 3.62778 0.11287 3.53664 15 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03406 4.03406 1.46634 0.26236 1.09861 0.40547 16 2.97495 3.62778 0.11287 3.53664 16 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03406 4.03406 1.46634 0.26236 1.09861 0.40547 17 3.47868 0.12490 3.52618 2.86205 17 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03406 4.03406 1.46634 0.26236 1.09861 0.40547 18 3.47868 0.12490 3.52618 2.86205 18 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03406 4.03406 1.46634 0.26236 1.09861 0.40547 19 2.24921 3.23380 0.20964 3.11822 19 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03406 4.03406 1.46634 0.26236 1.09861 0.40547 20 0.13678 3.41986 2.82758 3.32530 20 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03406 4.03406 1.46634 0.26236 1.09861 0.40547 21 2.97495 3.62778 0.11287 3.53664 21 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03406 4.03406 1.46634 0.26236 1.09861 0.40547 22 2.97495 3.62778 0.11287 3.53664 22 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03406 4.03406 1.46634 0.26236 1.09861 0.40547 23 2.97495 3.62778 0.11287 3.53664 23 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03406 4.03406 1.46634 0.26236 1.09861 0.40547 24 3.47868 0.12490 3.52618 2.86205 24 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03406 4.03406 1.46634 0.26236 1.09861 0.40547 25 0.13678 3.41986 2.82758 3.32530 25 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03406 4.03406 1.46634 0.26236 1.09861 0.40547 26 3.12876 2.62065 3.17537 0.17234 26 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03406 4.03406 1.46634 0.26236 1.09861 0.40547 27 2.97495 3.62778 0.11287 3.53664 27 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03406 4.03406 1.46634 0.26236 1.09861 0.40547 28 2.83058 1.96405 2.88853 0.29427 28 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03406 4.03406 1.46634 0.26236 1.09861 0.40547 29 3.47868 0.12490 3.52618 2.86205 29 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03406 4.03406 1.46634 0.26236 1.09861 0.40547 30 3.12876 2.62065 3.17537 0.17234 30 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03406 4.03406 1.46634 0.26236 1.09861 0.40547 31 2.97495 3.62778 0.11287 3.53664 31 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03406 4.03406 1.46634 0.26236 1.09861 0.40547 32 3.47868 0.12490 3.52618 2.86205 32 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03406 4.03406 1.46634 0.26236 1.09861 0.40547 33 3.47868 0.12490 3.52618 2.86205 33 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03406 4.03406 1.46634 0.26236 1.09861 0.40547 34 3.12876 2.62065 3.17537 0.17234 34 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03406 4.03406 1.46634 0.26236 1.09861 0.40547 35 3.47868 0.12490 3.52618 2.86205 35 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03406 4.03406 1.46634 0.26236 1.09861 0.40547 36 0.13678 3.41986 2.82758 3.32530 36 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03406 4.03406 1.46634 0.26236 1.09861 0.40547 37 2.97495 3.62778 0.11287 3.53664 37 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03406 4.03406 1.46634 0.26236 1.09861 0.40547 38 3.47868 0.12490 3.52618 2.86205 38 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03406 4.03406 1.46634 0.26236 1.09861 0.40547 39 2.97495 3.62778 0.11287 3.53664 39 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03406 4.03406 1.46634 0.26236 1.09861 0.40547 40 3.12876 2.62065 3.17537 0.17234 40 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03406 4.03406 1.46634 0.26236 1.09861 0.40547 41 3.47868 0.12490 3.52618 2.86205 41 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03406 4.03406 1.46634 0.26236 1.09861 0.40547 42 2.97495 3.62778 0.11287 3.53664 42 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03406 4.03406 1.46634 0.26236 1.09861 0.40547 43 2.97495 3.62778 0.11287 3.53664 43 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03406 4.03406 1.46634 0.26236 1.09861 0.40547 44 2.48929 0.64910 2.56125 1.14788 44 - - 1.38629 1.38629 1.38629 1.38629 0.03605 4.03406 4.03406 1.46634 0.26236 1.09861 0.40547 45 3.12876 2.62065 3.17537 0.17234 45 - - 1.38629 1.38629 1.38629 1.38629 0.01819 4.01620 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Chlorophyta_58S_end_fourc_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 28 01:05:38 2012 NSEQ 2 EFFN 2.000000 CKSUM 4033476049 STATS LOCAL MSV -7.5612 0.72774 STATS LOCAL VITERBI -8.2475 0.72774 STATS LOCAL FORWARD -3.2348 0.72774 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.92209 1.13184 1.12344 1.57940 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.53331 3.02441 0.20344 2.88069 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.81865 0.23582 2.88868 2.35662 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.53331 3.02441 0.20344 2.88069 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.81865 0.23582 2.88868 2.35662 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.81865 0.23582 2.88868 2.35662 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.53331 3.02441 0.20344 2.88069 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.81865 0.23582 2.88868 2.35662 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.81865 0.23582 2.88868 2.35662 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.57915 2.25909 2.64442 0.28946 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.81865 0.23582 2.88868 2.35662 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.81865 0.23582 2.88868 2.35662 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 0.23862 2.84929 2.43386 2.70756 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.57915 2.25909 2.64442 0.28946 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.81865 0.23582 2.88868 2.35662 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.81865 0.23582 2.88868 2.35662 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.53331 3.02441 0.20344 2.88069 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.53331 3.02441 0.20344 2.88069 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.15554 1.00938 2.23102 0.88601 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.57915 2.25909 2.64442 0.28946 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Chlorophyta_58S_end_fourd_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 28 01:05:44 2012 NSEQ 37 EFFN 3.491333 CKSUM 4193891022 STATS LOCAL MSV -7.3473 0.71933 STATS LOCAL VITERBI -7.6159 0.71933 STATS LOCAL FORWARD -3.6748 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.81457 1.15055 1.12962 1.62216 1.38629 1.38629 1.38629 1.38629 0.03577 4.04153 4.04153 1.46634 0.26236 0.00000 * 1 2.98381 3.64076 0.11152 3.55100 1 - - 1.38629 1.38629 1.38629 1.38629 0.03577 4.04153 4.04153 1.46634 0.26236 1.09861 0.40547 2 3.49351 0.12323 3.54036 2.87276 2 - - 1.38629 1.38629 1.38629 1.38629 0.03577 4.04153 4.04153 1.46634 0.26236 1.09861 0.40547 3 2.98381 3.64076 0.11152 3.55100 3 - - 1.38629 1.38629 1.38629 1.38629 0.03577 4.04153 4.04153 1.46634 0.26236 1.09861 0.40547 4 3.49351 0.12323 3.54036 2.87276 4 - - 1.38629 1.38629 1.38629 1.38629 0.03577 4.04153 4.04153 1.46634 0.26236 1.09861 0.40547 5 3.14193 2.62901 3.18803 0.17032 5 - - 1.38629 1.38629 1.38629 1.38629 0.03577 4.04153 4.04153 1.46634 0.26236 1.09861 0.40547 6 3.06128 0.23563 3.12175 2.12847 6 - - 1.38629 1.38629 1.38629 1.38629 0.03577 4.04153 4.04153 1.46634 0.26236 1.09861 0.40547 7 2.98381 3.64076 0.11152 3.55100 7 - - 1.38629 1.38629 1.38629 1.38629 0.03577 4.04153 4.04153 1.46634 0.26236 1.09861 0.40547 8 0.13515 3.43277 2.83592 3.33945 8 - - 1.38629 1.38629 1.38629 1.38629 0.03577 4.04153 4.04153 1.46634 0.26236 1.09861 0.40547 9 2.98381 3.64076 0.11152 3.55100 9 - - 1.38629 1.38629 1.38629 1.38629 0.03577 4.04153 4.04153 1.46634 0.26236 1.09861 0.40547 10 2.36747 3.31821 0.18678 3.20795 10 - - 1.38629 1.38629 1.38629 1.38629 0.03577 4.04153 4.04153 1.46634 0.26236 1.09861 0.40547 11 3.49351 0.12323 3.54036 2.87276 11 - - 1.38629 1.38629 1.38629 1.38629 0.03577 4.04153 4.04153 1.46634 0.26236 1.09861 0.40547 12 2.58532 0.51894 2.65603 1.34996 12 - - 1.38629 1.38629 1.38629 1.38629 0.03577 4.04153 4.04153 1.46634 0.26236 1.09861 0.40547 13 3.14193 2.62901 3.18803 0.17032 13 - - 1.38629 1.38629 1.38629 1.38629 0.03577 4.04153 4.04153 1.46634 0.26236 1.09861 0.40547 14 3.35284 0.15345 3.40426 2.60314 14 - - 1.38629 1.38629 1.38629 1.38629 0.03577 4.04153 4.04153 1.46634 0.26236 1.09861 0.40547 15 2.98381 3.64076 0.11152 3.55100 15 - - 1.38629 1.38629 1.38629 1.38629 0.03577 4.04153 4.04153 1.46634 0.26236 1.09861 0.40547 16 2.98381 3.64076 0.11152 3.55100 16 - - 1.38629 1.38629 1.38629 1.38629 0.03577 4.04153 4.04153 1.46634 0.26236 1.09861 0.40547 17 3.12324 0.21522 3.18195 2.22456 17 - - 1.38629 1.38629 1.38629 1.38629 0.03577 4.04153 4.04153 1.46634 0.26236 1.09861 0.40547 18 3.49351 0.12323 3.54036 2.87276 18 - - 1.38629 1.38629 1.38629 1.38629 0.03577 4.04153 4.04153 1.46634 0.26236 1.09861 0.40547 19 0.13515 3.43277 2.83592 3.33945 19 - - 1.38629 1.38629 1.38629 1.38629 0.03577 4.04153 4.04153 1.46634 0.26236 1.09861 0.40547 20 0.13515 3.43277 2.83592 3.33945 20 - - 1.38629 1.38629 1.38629 1.38629 0.03577 4.04153 4.04153 1.46634 0.26236 1.09861 0.40547 21 2.98381 3.64076 0.11152 3.55100 21 - - 1.38629 1.38629 1.38629 1.38629 0.03577 4.04153 4.04153 1.46634 0.26236 1.09861 0.40547 22 0.13515 3.43277 2.83592 3.33945 22 - - 1.38629 1.38629 1.38629 1.38629 0.03577 4.04153 4.04153 1.46634 0.26236 1.09861 0.40547 23 2.98381 3.64076 0.11152 3.55100 23 - - 1.38629 1.38629 1.38629 1.38629 0.03577 4.04153 4.04153 1.46634 0.26236 1.09861 0.40547 24 3.49351 0.12323 3.54036 2.87276 24 - - 1.38629 1.38629 1.38629 1.38629 0.03577 4.04153 4.04153 1.46634 0.26236 1.09861 0.40547 25 0.13515 3.43277 2.83592 3.33945 25 - - 1.38629 1.38629 1.38629 1.38629 0.03577 4.04153 4.04153 1.46634 0.26236 1.09861 0.40547 26 3.14193 2.62901 3.18803 0.17032 26 - - 1.38629 1.38629 1.38629 1.38629 0.03577 4.04153 4.04153 1.46634 0.26236 1.09861 0.40547 27 2.98381 3.64076 0.11152 3.55100 27 - - 1.38629 1.38629 1.38629 1.38629 0.03577 4.04153 4.04153 1.46634 0.26236 1.09861 0.40547 28 3.14193 2.62901 3.18803 0.17032 28 - - 1.38629 1.38629 1.38629 1.38629 0.03577 4.04153 4.04153 1.46634 0.26236 1.09861 0.40547 29 3.49351 0.12323 3.54036 2.87276 29 - - 1.38629 1.38629 1.38629 1.38629 0.03577 4.04153 4.04153 1.46634 0.26236 1.09861 0.40547 30 3.14193 2.62901 3.18803 0.17032 30 - - 1.38629 1.38629 1.38629 1.38629 0.03577 4.04153 4.04153 1.46634 0.26236 1.09861 0.40547 31 2.98381 3.64076 0.11152 3.55100 31 - - 1.38629 1.38629 1.38629 1.38629 0.03577 4.04153 4.04153 1.46634 0.26236 1.09861 0.40547 32 2.20534 0.64774 1.42928 2.06296 32 - - 1.38629 1.38629 1.38629 1.38629 0.03577 4.04153 4.04153 1.46634 0.26236 1.09861 0.40547 33 3.49351 0.12323 3.54036 2.87276 33 - - 1.38629 1.38629 1.38629 1.38629 0.03577 4.04153 4.04153 1.46634 0.26236 1.09861 0.40547 34 3.14193 2.62901 3.18803 0.17032 34 - - 1.38629 1.38629 1.38629 1.38629 0.03577 4.04153 4.04153 1.46634 0.26236 1.09861 0.40547 35 3.49351 0.12323 3.54036 2.87276 35 - - 1.38629 1.38629 1.38629 1.38629 0.03577 4.04153 4.04153 1.46634 0.26236 1.09861 0.40547 36 0.13515 3.43277 2.83592 3.33945 36 - - 1.38629 1.38629 1.38629 1.38629 0.03577 4.04153 4.04153 1.46634 0.26236 1.09861 0.40547 37 2.98381 3.64076 0.11152 3.55100 37 - - 1.38629 1.38629 1.38629 1.38629 0.03577 4.04153 4.04153 1.46634 0.26236 1.09861 0.40547 38 3.49351 0.12323 3.54036 2.87276 38 - - 1.38629 1.38629 1.38629 1.38629 0.03577 4.04153 4.04153 1.46634 0.26236 1.09861 0.40547 39 2.98381 3.64076 0.11152 3.55100 39 - - 1.38629 1.38629 1.38629 1.38629 0.03577 4.04153 4.04153 1.46634 0.26236 1.09861 0.40547 40 3.14193 2.62901 3.18803 0.17032 40 - - 1.38629 1.38629 1.38629 1.38629 0.03577 4.04153 4.04153 1.46634 0.26236 1.09861 0.40547 41 3.49351 0.12323 3.54036 2.87276 41 - - 1.38629 1.38629 1.38629 1.38629 0.03577 4.04153 4.04153 1.46634 0.26236 1.09861 0.40547 42 2.98381 3.64076 0.11152 3.55100 42 - - 1.38629 1.38629 1.38629 1.38629 0.03577 4.04153 4.04153 1.46634 0.26236 1.09861 0.40547 43 2.98381 3.64076 0.11152 3.55100 43 - - 1.38629 1.38629 1.38629 1.38629 0.03577 4.04153 4.04153 1.46634 0.26236 1.09861 0.40547 44 3.49351 0.12323 3.54036 2.87276 44 - - 1.38629 1.38629 1.38629 1.38629 0.03577 4.04153 4.04153 1.46634 0.26236 1.09861 0.40547 45 3.14193 2.62901 3.18803 0.17032 45 - - 1.38629 1.38629 1.38629 1.38629 0.01805 4.02380 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Chlorophyta_58S_end_foure_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 28 01:05:49 2012 NSEQ 2 EFFN 2.000000 CKSUM 3417266488 STATS LOCAL MSV -7.7330 0.72754 STATS LOCAL VITERBI -8.2607 0.72754 STATS LOCAL FORWARD -3.0985 0.72754 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.59465 1.19407 1.26934 1.54638 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.53331 3.02441 0.20344 2.88069 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.81865 0.23582 2.88868 2.35662 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.23862 2.84929 2.43386 2.70756 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.57915 2.25909 2.64442 0.28946 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.81865 0.23582 2.88868 2.35662 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.53331 3.02441 0.20344 2.88069 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 0.23862 2.84929 2.43386 2.70756 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.81865 0.23582 2.88868 2.35662 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.81865 0.23582 2.88868 2.35662 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.57915 2.25909 2.64442 0.28946 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.81865 0.23582 2.88868 2.35662 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.81865 0.23582 2.88868 2.35662 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 0.23862 2.84929 2.43386 2.70756 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.23862 2.84929 2.43386 2.70756 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.57915 2.25909 2.64442 0.28946 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.81865 0.23582 2.88868 2.35662 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.81865 0.23582 2.88868 2.35662 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.23862 2.84929 2.43386 2.70756 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.53331 3.02441 0.20344 2.88069 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.81865 0.23582 2.88868 2.35662 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.57915 2.25909 2.64442 0.28946 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Chlorophyta_58S_end_fourf_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 28 01:06:00 2012 NSEQ 8 EFFN 3.167969 CKSUM 3434890060 STATS LOCAL MSV -8.1024 0.71933 STATS LOCAL VITERBI -7.7981 0.71933 STATS LOCAL FORWARD -4.1734 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.92630 1.26262 1.04226 1.51985 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 0.00000 * 1 2.91173 3.53592 0.12299 3.43528 1 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 2 3.37444 0.13743 3.42635 2.78609 2 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 3 2.91173 3.53592 0.12299 3.43528 3 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 4 3.37444 0.13743 3.42635 2.78609 4 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 5 3.37444 0.13743 3.42635 2.78609 5 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 6 3.37444 0.13743 3.42635 2.78609 6 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 7 0.14880 3.32943 2.76878 3.22633 7 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 8 0.14880 3.32943 2.76878 3.22633 8 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 9 2.91173 3.53592 0.12299 3.43528 9 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 10 2.91173 3.53592 0.12299 3.43528 10 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 11 3.37444 0.13743 3.42635 2.78609 11 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 12 3.03758 2.56263 3.08768 0.18713 12 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 13 3.03758 2.56263 3.08768 0.18713 13 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 14 3.37444 0.13743 3.42635 2.78609 14 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 15 2.91173 3.53592 0.12299 3.43528 15 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 16 2.91173 3.53592 0.12299 3.43528 16 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 17 3.37444 0.13743 3.42635 2.78609 17 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 18 3.03758 2.56263 3.08768 0.18713 18 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 19 2.91173 3.53592 0.12299 3.43528 19 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 20 0.14880 3.32943 2.76878 3.22633 20 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 21 2.91173 3.53592 0.12299 3.43528 21 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 22 2.91173 3.53592 0.12299 3.43528 22 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 23 2.91173 3.53592 0.12299 3.43528 23 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 24 3.37444 0.13743 3.42635 2.78609 24 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 25 0.14880 3.32943 2.76878 3.22633 25 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 26 3.03758 2.56263 3.08768 0.18713 26 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 27 2.91173 3.53592 0.12299 3.43528 27 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 28 3.03758 2.56263 3.08768 0.18713 28 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 29 3.03758 2.56263 3.08768 0.18713 29 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 30 3.03758 2.56263 3.08768 0.18713 30 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 31 2.91173 3.53592 0.12299 3.43528 31 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 32 3.37444 0.13743 3.42635 2.78609 32 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 33 3.37444 0.13743 3.42635 2.78609 33 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 34 3.03758 2.56263 3.08768 0.18713 34 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 35 3.37444 0.13743 3.42635 2.78609 35 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 36 0.14880 3.32943 2.76878 3.22633 36 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 37 2.91173 3.53592 0.12299 3.43528 37 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 38 3.37444 0.13743 3.42635 2.78609 38 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 39 2.91173 3.53592 0.12299 3.43528 39 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 40 3.03758 2.56263 3.08768 0.18713 40 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 41 3.37444 0.13743 3.42635 2.78609 41 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 42 2.91173 3.53592 0.12299 3.43528 42 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 43 2.91173 3.53592 0.12299 3.43528 43 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 44 2.91173 3.53592 0.12299 3.43528 44 - - 1.38629 1.38629 1.38629 1.38629 0.03797 3.98303 3.98303 1.46634 0.26236 1.09861 0.40547 45 2.75074 1.94228 2.81080 0.31118 45 - - 1.38629 1.38629 1.38629 1.38629 0.01917 3.96423 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Chlorophyta_58S_end_fourg_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 28 01:06:07 2012 NSEQ 2 EFFN 2.000000 CKSUM 2243792262 STATS LOCAL MSV -7.3533 0.72732 STATS LOCAL VITERBI -8.2770 0.72732 STATS LOCAL FORWARD -3.2502 0.72732 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.92263 1.24319 1.07887 1.49018 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.53331 3.02441 0.20344 2.88069 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.81865 0.23582 2.88868 2.35662 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.53331 3.02441 0.20344 2.88069 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.57915 2.25909 2.64442 0.28946 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.81865 0.23582 2.88868 2.35662 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.81865 0.23582 2.88868 2.35662 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.53331 3.02441 0.20344 2.88069 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.81865 0.23582 2.88868 2.35662 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.81865 0.23582 2.88868 2.35662 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.57915 2.25909 2.64442 0.28946 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.57915 2.25909 2.64442 0.28946 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.81865 0.23582 2.88868 2.35662 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.81865 0.23582 2.88868 2.35662 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 0.23862 2.84929 2.43386 2.70756 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.57915 2.25909 2.64442 0.28946 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.57915 2.25909 2.64442 0.28946 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.81865 0.23582 2.88868 2.35662 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.81865 0.23582 2.88868 2.35662 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.53331 3.02441 0.20344 2.88069 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.53331 3.02441 0.20344 2.88069 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.53331 3.02441 0.20344 2.88069 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.57915 2.25909 2.64442 0.28946 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Chlorophyta_58S_end_fourteen_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 28 01:09:05 2012 NSEQ 2 EFFN 2.000000 CKSUM 3072563933 STATS LOCAL MSV -7.4500 0.72782 STATS LOCAL VITERBI -8.2633 0.72782 STATS LOCAL FORWARD -3.4545 0.72782 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.92135 1.28482 1.17173 1.32028 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.57915 2.25909 2.64442 0.28946 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.57915 2.25909 2.64442 0.28946 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.53331 3.02441 0.20344 2.88069 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.53331 3.02441 0.20344 2.88069 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.81865 0.23582 2.88868 2.35662 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.81865 0.23582 2.88868 2.35662 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.81865 0.23582 2.88868 2.35662 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.53331 3.02441 0.20344 2.88069 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.57915 2.25909 2.64442 0.28946 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.57915 2.25909 2.64442 0.28946 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 0.23862 2.84929 2.43386 2.70756 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.53331 3.02441 0.20344 2.88069 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.81865 0.23582 2.88868 2.35662 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.81865 0.23582 2.88868 2.35662 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.57915 2.25909 2.64442 0.28946 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.57915 2.25909 2.64442 0.28946 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.81865 0.23582 2.88868 2.35662 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.81865 0.23582 2.88868 2.35662 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.53331 3.02441 0.20344 2.88069 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.57915 2.25909 2.64442 0.28946 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Chlorophyta_58S_end_nine_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 28 01:07:08 2012 NSEQ 8 EFFN 3.128906 CKSUM 2240641702 STATS LOCAL MSV -8.0911 0.71933 STATS LOCAL VITERBI -7.7425 0.71933 STATS LOCAL FORWARD -4.1987 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.82201 1.15564 1.14738 1.58000 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 0.00000 * 1 2.90228 3.52232 0.12458 3.42031 1 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 2 3.35912 0.13939 3.41165 2.77481 2 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 3 0.15066 3.31617 2.76009 3.21184 3 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 4 3.35912 0.13939 3.41165 2.77481 4 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 5 3.02437 2.55419 3.07496 0.18939 5 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 6 3.35912 0.13939 3.41165 2.77481 6 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 7 2.90228 3.52232 0.12458 3.42031 7 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 8 0.15066 3.31617 2.76009 3.21184 8 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 9 2.90228 3.52232 0.12458 3.42031 9 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 10 2.90228 3.52232 0.12458 3.42031 10 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 11 3.35912 0.13939 3.41165 2.77481 11 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 12 3.02437 2.55419 3.07496 0.18939 12 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 13 3.35912 0.13939 3.41165 2.77481 13 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 14 3.35912 0.13939 3.41165 2.77481 14 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 15 2.90228 3.52232 0.12458 3.42031 15 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 16 2.90228 3.52232 0.12458 3.42031 16 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 17 3.35912 0.13939 3.41165 2.77481 17 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 18 3.35912 0.13939 3.41165 2.77481 18 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 19 2.90228 3.52232 0.12458 3.42031 19 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 20 0.15066 3.31617 2.76009 3.21184 20 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 21 2.90228 3.52232 0.12458 3.42031 21 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 22 0.15066 3.31617 2.76009 3.21184 22 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 23 2.90228 3.52232 0.12458 3.42031 23 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 24 3.02437 2.55419 3.07496 0.18939 24 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 25 0.15066 3.31617 2.76009 3.21184 25 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 26 3.02437 2.55419 3.07496 0.18939 26 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 27 2.90228 3.52232 0.12458 3.42031 27 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 28 3.02437 2.55419 3.07496 0.18939 28 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 29 3.35912 0.13939 3.41165 2.77481 29 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 30 3.02437 2.55419 3.07496 0.18939 30 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 31 2.90228 3.52232 0.12458 3.42031 31 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 32 3.35912 0.13939 3.41165 2.77481 32 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 33 3.35912 0.13939 3.41165 2.77481 33 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 34 3.02437 2.55419 3.07496 0.18939 34 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 35 3.35912 0.13939 3.41165 2.77481 35 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 36 0.15066 3.31617 2.76009 3.21184 36 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 37 2.90228 3.52232 0.12458 3.42031 37 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 38 3.35912 0.13939 3.41165 2.77481 38 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 39 2.90228 3.52232 0.12458 3.42031 39 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 40 3.02437 2.55419 3.07496 0.18939 40 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 41 3.35912 0.13939 3.41165 2.77481 41 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 42 2.90228 3.52232 0.12458 3.42031 42 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 43 2.90228 3.52232 0.12458 3.42031 43 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 44 3.35912 0.13939 3.41165 2.77481 44 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 45 3.02437 2.55419 3.07496 0.18939 45 - - 1.38629 1.38629 1.38629 1.38629 0.01931 3.95679 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Chlorophyta_58S_end_onea_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 28 01:03:35 2012 NSEQ 2 EFFN 2.000000 CKSUM 2817009518 STATS LOCAL MSV -7.3765 0.72757 STATS LOCAL VITERBI -8.2230 0.72757 STATS LOCAL FORWARD -3.3891 0.72757 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.66659 1.24202 1.21600 1.48769 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.53331 3.02441 0.20344 2.88069 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.81865 0.23582 2.88868 2.35662 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.53331 3.02441 0.20344 2.88069 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.53331 3.02441 0.20344 2.88069 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.57915 2.25909 2.64442 0.28946 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.53331 3.02441 0.20344 2.88069 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 0.23862 2.84929 2.43386 2.70756 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 0.23862 2.84929 2.43386 2.70756 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.81865 0.23582 2.88868 2.35662 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.81865 0.23582 2.88868 2.35662 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.57915 2.25909 2.64442 0.28946 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.81865 0.23582 2.88868 2.35662 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 0.23862 2.84929 2.43386 2.70756 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.81865 0.23582 2.88868 2.35662 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.81865 0.23582 2.88868 2.35662 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.23862 2.84929 2.43386 2.70756 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.81865 0.23582 2.88868 2.35662 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.81865 0.23582 2.88868 2.35662 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.57915 2.25909 2.64442 0.28946 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.53331 3.02441 0.20344 2.88069 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.57915 2.25909 2.64442 0.28946 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.81865 0.23582 2.88868 2.35662 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.53331 3.02441 0.20344 2.88069 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.53331 3.02441 0.20344 2.88069 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Chlorophyta_58S_end_onec_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 28 01:03:55 2012 NSEQ 3 EFFN 3.000000 CKSUM 1434293828 STATS LOCAL MSV -8.0810 0.72041 STATS LOCAL VITERBI -7.9114 0.72041 STATS LOCAL FORWARD -4.0225 0.72041 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.62529 1.31451 1.19507 1.46163 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 2.86982 3.47591 0.13017 3.36931 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 3.30705 0.14631 3.36166 2.73626 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 2.86982 3.47591 0.13017 3.36931 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 2.86982 3.47591 0.13017 3.36931 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 2.97980 2.52563 3.03204 0.19727 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 2.86982 3.47591 0.13017 3.36931 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 0.15719 3.27118 2.73043 3.16274 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 0.15719 3.27118 2.73043 3.16274 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 2.86982 3.47591 0.13017 3.36931 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 2.86982 3.47591 0.13017 3.36931 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 3.30705 0.14631 3.36166 2.73626 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 2.97980 2.52563 3.03204 0.19727 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 2.97980 2.52563 3.03204 0.19727 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 3.30705 0.14631 3.36166 2.73626 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 2.86982 3.47591 0.13017 3.36931 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 2.86982 3.47591 0.13017 3.36931 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 3.30705 0.14631 3.36166 2.73626 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 2.43088 1.34923 2.50068 0.56112 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 0.15719 3.27118 2.73043 3.16274 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 0.15719 3.27118 2.73043 3.16274 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 3.30705 0.14631 3.36166 2.73626 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 0.15719 3.27118 2.73043 3.16274 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 3.30705 0.14631 3.36166 2.73626 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 3.30705 0.14631 3.36166 2.73626 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 0.15719 3.27118 2.73043 3.16274 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 2.97980 2.52563 3.03204 0.19727 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 3.30705 0.14631 3.36166 2.73626 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 2.97980 2.52563 3.03204 0.19727 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 3.30705 0.14631 3.36166 2.73626 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 2.97980 2.52563 3.03204 0.19727 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 2.86982 3.47591 0.13017 3.36931 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 2.86982 3.47591 0.13017 3.36931 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 2.97980 2.52563 3.03204 0.19727 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 2.97980 2.52563 3.03204 0.19727 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 3.30705 0.14631 3.36166 2.73626 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 0.15719 3.27118 2.73043 3.16274 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 2.86982 3.47591 0.13017 3.36931 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 3.30705 0.14631 3.36166 2.73626 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 2.86982 3.47591 0.13017 3.36931 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 2.97980 2.52563 3.03204 0.19727 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 3.30705 0.14631 3.36166 2.73626 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 2.86982 3.47591 0.13017 3.36931 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 0.15719 3.27118 2.73043 3.16274 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 2.97980 2.52563 3.03204 0.19727 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 2.86982 3.47591 0.13017 3.36931 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Chlorophyta_58S_end_oned_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 28 01:04:07 2012 NSEQ 2 EFFN 2.000000 CKSUM 468697630 STATS LOCAL MSV -7.3499 0.72735 STATS LOCAL VITERBI -8.3054 0.72735 STATS LOCAL FORWARD -3.4738 0.72735 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.66060 1.40893 1.07299 1.49796 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.53331 3.02441 0.20344 2.88069 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.81865 0.23582 2.88868 2.35662 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.53331 3.02441 0.20344 2.88069 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.57915 2.25909 2.64442 0.28946 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.53331 3.02441 0.20344 2.88069 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.53331 3.02441 0.20344 2.88069 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 0.23862 2.84929 2.43386 2.70756 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.81865 0.23582 2.88868 2.35662 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.57915 2.25909 2.64442 0.28946 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.57915 2.25909 2.64442 0.28946 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.81865 0.23582 2.88868 2.35662 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.81865 0.23582 2.88868 2.35662 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.23862 2.84929 2.43386 2.70756 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.57915 2.25909 2.64442 0.28946 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.53331 3.02441 0.20344 2.88069 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.23862 2.84929 2.43386 2.70756 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.81865 0.23582 2.88868 2.35662 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.53331 3.02441 0.20344 2.88069 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.53331 3.02441 0.20344 2.88069 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Chlorophyta_58S_end_onee_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 28 01:04:21 2012 NSEQ 2 EFFN 2.000000 CKSUM 2249999661 STATS LOCAL MSV -7.5609 0.72738 STATS LOCAL VITERBI -8.2838 0.72738 STATS LOCAL FORWARD -3.3217 0.72738 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.66646 1.24503 1.16756 1.55104 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.53331 3.02441 0.20344 2.88069 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.81865 0.23582 2.88868 2.35662 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.53331 3.02441 0.20344 2.88069 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.57915 2.25909 2.64442 0.28946 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.81865 0.23582 2.88868 2.35662 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.53331 3.02441 0.20344 2.88069 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 0.23862 2.84929 2.43386 2.70756 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.81865 0.23582 2.88868 2.35662 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.23862 2.84929 2.43386 2.70756 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.57915 2.25909 2.64442 0.28946 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.81865 0.23582 2.88868 2.35662 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.57915 2.25909 2.64442 0.28946 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.81865 0.23582 2.88868 2.35662 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.23862 2.84929 2.43386 2.70756 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.57915 2.25909 2.64442 0.28946 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.81865 0.23582 2.88868 2.35662 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.81865 0.23582 2.88868 2.35662 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.53331 3.02441 0.20344 2.88069 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.53331 3.02441 0.20344 2.88069 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Chlorophyta_58S_end_seven_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 28 01:06:49 2012 NSEQ 50 EFFN 3.720093 CKSUM 357463622 STATS LOCAL MSV -6.8679 0.71933 STATS LOCAL VITERBI -7.7200 0.71933 STATS LOCAL FORWARD -4.4179 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.55975 1.15919 1.26176 1.64550 1.38629 1.38629 1.38629 1.38629 0.03437 4.08094 4.08094 1.46634 0.26236 0.00000 * 1 3.56985 0.11502 3.61331 2.92754 1 - - 1.38629 1.38629 1.38629 1.38629 0.03437 4.08094 4.08094 1.46634 0.26236 1.09861 0.40547 2 3.56985 0.11502 3.61331 2.92754 2 - - 1.38629 1.38629 1.38629 1.38629 0.03437 4.08094 4.08094 1.46634 0.26236 1.09861 0.40547 3 3.02897 3.70726 0.10488 3.62466 3 - - 1.38629 1.38629 1.38629 1.38629 0.03437 4.08094 4.08094 1.46634 0.26236 1.09861 0.40547 4 3.02897 3.70726 0.10488 3.62466 4 - - 1.38629 1.38629 1.38629 1.38629 0.03437 4.08094 4.08094 1.46634 0.26236 1.09861 0.40547 5 3.21060 2.67254 3.25402 0.16020 5 - - 1.38629 1.38629 1.38629 1.38629 0.03437 4.08094 4.08094 1.46634 0.26236 1.09861 0.40547 6 3.56985 0.11502 3.61331 2.92754 6 - - 1.38629 1.38629 1.38629 1.38629 0.03437 4.08094 4.08094 1.46634 0.26236 1.09861 0.40547 7 3.02897 3.70726 0.10488 3.62466 7 - - 1.38629 1.38629 1.38629 1.38629 0.03437 4.08094 4.08094 1.46634 0.26236 1.09861 0.40547 8 0.12711 3.49946 2.87886 3.41264 8 - - 1.38629 1.38629 1.38629 1.38629 0.03437 4.08094 4.08094 1.46634 0.26236 1.09861 0.40547 9 1.93380 0.79778 1.32089 1.97922 9 - - 1.38629 1.38629 1.38629 1.38629 0.03437 4.08094 4.08094 1.46634 0.26236 1.09861 0.40547 10 2.13834 2.44062 2.72922 0.31502 10 - - 1.38629 1.38629 1.38629 1.38629 0.03437 4.08094 4.08094 1.46634 0.26236 1.09861 0.40547 11 3.56985 0.11502 3.61331 2.92754 11 - - 1.38629 1.38629 1.38629 1.38629 0.03437 4.08094 4.08094 1.46634 0.26236 1.09861 0.40547 12 3.21060 2.67254 3.25402 0.16020 12 - - 1.38629 1.38629 1.38629 1.38629 0.03437 4.08094 4.08094 1.46634 0.26236 1.09861 0.40547 13 3.08820 2.36855 3.13664 0.20166 13 - - 1.38629 1.38629 1.38629 1.38629 0.03437 4.08094 4.08094 1.46634 0.26236 1.09861 0.40547 14 3.56985 0.11502 3.61331 2.92754 14 - - 1.38629 1.38629 1.38629 1.38629 0.03437 4.08094 4.08094 1.46634 0.26236 1.09861 0.40547 15 3.02897 3.70726 0.10488 3.62466 15 - - 1.38629 1.38629 1.38629 1.38629 0.03437 4.08094 4.08094 1.46634 0.26236 1.09861 0.40547 16 3.02897 3.70726 0.10488 3.62466 16 - - 1.38629 1.38629 1.38629 1.38629 0.03437 4.08094 4.08094 1.46634 0.26236 1.09861 0.40547 17 0.27334 2.87968 2.58561 2.22878 17 - - 1.38629 1.38629 1.38629 1.38629 0.03437 4.08094 4.08094 1.46634 0.26236 1.09861 0.40547 18 2.03406 1.52747 0.81004 1.57372 18 - - 1.38629 1.38629 1.38629 1.38629 0.03437 4.08094 4.08094 1.46634 0.26236 1.09861 0.40547 19 3.02897 3.70726 0.10488 3.62466 19 - - 1.38629 1.38629 1.38629 1.38629 0.03437 4.08094 4.08094 1.46634 0.26236 1.09861 0.40547 20 0.12711 3.49946 2.87886 3.41264 20 - - 1.38629 1.38629 1.38629 1.38629 0.03437 4.08094 4.08094 1.46634 0.26236 1.09861 0.40547 21 3.02897 3.70726 0.10488 3.62466 21 - - 1.38629 1.38629 1.38629 1.38629 0.03437 4.08094 4.08094 1.46634 0.26236 1.09861 0.40547 22 0.12711 3.49946 2.87886 3.41264 22 - - 1.38629 1.38629 1.38629 1.38629 0.03437 4.08094 4.08094 1.46634 0.26236 1.09861 0.40547 23 3.56985 0.11502 3.61331 2.92754 23 - - 1.38629 1.38629 1.38629 1.38629 0.03437 4.08094 4.08094 1.46634 0.26236 1.09861 0.40547 24 3.56985 0.11502 3.61331 2.92754 24 - - 1.38629 1.38629 1.38629 1.38629 0.03437 4.08094 4.08094 1.46634 0.26236 1.09861 0.40547 25 0.12711 3.49946 2.87886 3.41264 25 - - 1.38629 1.38629 1.38629 1.38629 0.03437 4.08094 4.08094 1.46634 0.26236 1.09861 0.40547 26 3.56985 0.11502 3.61331 2.92754 26 - - 1.38629 1.38629 1.38629 1.38629 0.03437 4.08094 4.08094 1.46634 0.26236 1.09861 0.40547 27 0.12711 3.49946 2.87886 3.41264 27 - - 1.38629 1.38629 1.38629 1.38629 0.03437 4.08094 4.08094 1.46634 0.26236 1.09861 0.40547 28 3.21060 2.67254 3.25402 0.16020 28 - - 1.38629 1.38629 1.38629 1.38629 0.03437 4.08094 4.08094 1.46634 0.26236 1.09861 0.40547 29 3.56985 0.11502 3.61331 2.92754 29 - - 1.38629 1.38629 1.38629 1.38629 0.03437 4.08094 4.08094 1.46634 0.26236 1.09861 0.40547 30 3.21060 2.67254 3.25402 0.16020 30 - - 1.38629 1.38629 1.38629 1.38629 0.03437 4.08094 4.08094 1.46634 0.26236 1.09861 0.40547 31 3.02897 3.70726 0.10488 3.62466 31 - - 1.38629 1.38629 1.38629 1.38629 0.03437 4.08094 4.08094 1.46634 0.26236 1.09861 0.40547 32 3.33940 0.16483 3.39119 2.49090 32 - - 1.38629 1.38629 1.38629 1.38629 0.03437 4.08094 4.08094 1.46634 0.26236 1.09861 0.40547 33 3.56985 0.11502 3.61331 2.92754 33 - - 1.38629 1.38629 1.38629 1.38629 0.03437 4.08094 4.08094 1.46634 0.26236 1.09861 0.40547 34 3.21060 2.67254 3.25402 0.16020 34 - - 1.38629 1.38629 1.38629 1.38629 0.03437 4.08094 4.08094 1.46634 0.26236 1.09861 0.40547 35 3.56985 0.11502 3.61331 2.92754 35 - - 1.38629 1.38629 1.38629 1.38629 0.03437 4.08094 4.08094 1.46634 0.26236 1.09861 0.40547 36 0.12711 3.49946 2.87886 3.41264 36 - - 1.38629 1.38629 1.38629 1.38629 0.03437 4.08094 4.08094 1.46634 0.26236 1.09861 0.40547 37 3.02897 3.70726 0.10488 3.62466 37 - - 1.38629 1.38629 1.38629 1.38629 0.03437 4.08094 4.08094 1.46634 0.26236 1.09861 0.40547 38 3.56985 0.11502 3.61331 2.92754 38 - - 1.38629 1.38629 1.38629 1.38629 0.03437 4.08094 4.08094 1.46634 0.26236 1.09861 0.40547 39 3.02897 3.70726 0.10488 3.62466 39 - - 1.38629 1.38629 1.38629 1.38629 0.03437 4.08094 4.08094 1.46634 0.26236 1.09861 0.40547 40 3.21060 2.67254 3.25402 0.16020 40 - - 1.38629 1.38629 1.38629 1.38629 0.03437 4.08094 4.08094 1.46634 0.26236 1.09861 0.40547 41 3.56985 0.11502 3.61331 2.92754 41 - - 1.38629 1.38629 1.38629 1.38629 0.03437 4.08094 4.08094 1.46634 0.26236 1.09861 0.40547 42 3.02897 3.70726 0.10488 3.62466 42 - - 1.38629 1.38629 1.38629 1.38629 0.03437 4.08094 4.08094 1.46634 0.26236 1.09861 0.40547 43 3.02897 3.70726 0.10488 3.62466 43 - - 1.38629 1.38629 1.38629 1.38629 0.03437 4.08094 4.08094 1.46634 0.26236 1.09861 0.40547 44 0.28650 3.01784 1.93054 2.89794 44 - - 1.38629 1.38629 1.38629 1.38629 0.03437 4.08094 4.08094 1.46634 0.26236 1.09861 0.40547 45 0.12711 3.49946 2.87886 3.41264 45 - - 1.38629 1.38629 1.38629 1.38629 0.01733 4.06390 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Chlorophyta_58S_end_seventeena_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 28 01:10:11 2012 NSEQ 29 EFFN 3.451538 CKSUM 3894991408 STATS LOCAL MSV -7.0988 0.71933 STATS LOCAL VITERBI -7.8238 0.71933 STATS LOCAL FORWARD -3.7643 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.92953 1.07117 1.03558 1.85051 1.38629 1.38629 1.38629 1.38629 0.03603 4.03451 4.03451 1.46634 0.26236 0.00000 * 1 3.47958 0.12480 3.52704 2.86271 1 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03451 4.03451 1.46634 0.26236 1.09861 0.40547 2 3.47958 0.12480 3.52704 2.86271 2 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03451 4.03451 1.46634 0.26236 1.09861 0.40547 3 3.12956 2.62116 3.17614 0.17222 3 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03451 4.03451 1.46634 0.26236 1.09861 0.40547 4 3.06193 0.23335 3.12238 2.14323 4 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03451 4.03451 1.46634 0.26236 1.09861 0.40547 5 2.97217 0.26645 3.03499 2.00519 5 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03451 4.03451 1.46634 0.26236 1.09861 0.40547 6 3.31033 0.16208 3.36320 2.54466 6 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03451 4.03451 1.46634 0.26236 1.09861 0.40547 7 2.57191 0.52728 2.64282 1.33850 7 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03451 4.03451 1.46634 0.26236 1.09861 0.40547 8 3.12956 2.62116 3.17614 0.17222 8 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03451 4.03451 1.46634 0.26236 1.09861 0.40547 9 3.04620 0.23880 3.10708 2.11894 9 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03451 4.03451 1.46634 0.26236 1.09861 0.40547 10 2.97549 3.62857 0.11279 3.53751 10 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03451 4.03451 1.46634 0.26236 1.09861 0.40547 11 3.47958 0.12480 3.52704 2.86271 11 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03451 4.03451 1.46634 0.26236 1.09861 0.40547 12 3.47958 0.12480 3.52704 2.86271 12 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03451 4.03451 1.46634 0.26236 1.09861 0.40547 13 2.50245 1.28434 2.57140 0.57119 13 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03451 4.03451 1.46634 0.26236 1.09861 0.40547 14 2.80379 1.91051 2.86272 0.30884 14 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03451 4.03451 1.46634 0.26236 1.09861 0.40547 15 3.47958 0.12480 3.52704 2.86271 15 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03451 4.03451 1.46634 0.26236 1.09861 0.40547 16 2.97549 3.62857 0.11279 3.53751 16 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03451 4.03451 1.46634 0.26236 1.09861 0.40547 17 2.97549 3.62857 0.11279 3.53751 17 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03451 4.03451 1.46634 0.26236 1.09861 0.40547 18 2.97549 3.62857 0.11279 3.53751 18 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03451 4.03451 1.46634 0.26236 1.09861 0.40547 19 3.47958 0.12480 3.52704 2.86271 19 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03451 4.03451 1.46634 0.26236 1.09861 0.40547 20 2.97549 3.62857 0.11279 3.53751 20 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03451 4.03451 1.46634 0.26236 1.09861 0.40547 21 2.97549 3.62857 0.11279 3.53751 21 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03451 4.03451 1.46634 0.26236 1.09861 0.40547 22 0.13668 3.42064 2.82809 3.32616 22 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03451 4.03451 1.46634 0.26236 1.09861 0.40547 23 2.97549 3.62857 0.11279 3.53751 23 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03451 4.03451 1.46634 0.26236 1.09861 0.40547 24 2.97549 3.62857 0.11279 3.53751 24 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03451 4.03451 1.46634 0.26236 1.09861 0.40547 25 2.97549 3.62857 0.11279 3.53751 25 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03451 4.03451 1.46634 0.26236 1.09861 0.40547 26 0.13668 3.42064 2.82809 3.32616 26 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03451 4.03451 1.46634 0.26236 1.09861 0.40547 27 2.97549 3.62857 0.11279 3.53751 27 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03451 4.03451 1.46634 0.26236 1.09861 0.40547 28 2.97549 3.62857 0.11279 3.53751 28 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03451 4.03451 1.46634 0.26236 1.09861 0.40547 29 0.13668 3.42064 2.82809 3.32616 29 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03451 4.03451 1.46634 0.26236 1.09861 0.40547 30 3.47958 0.12480 3.52704 2.86271 30 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03451 4.03451 1.46634 0.26236 1.09861 0.40547 31 2.97549 3.62857 0.11279 3.53751 31 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03451 4.03451 1.46634 0.26236 1.09861 0.40547 32 3.47958 0.12480 3.52704 2.86271 32 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03451 4.03451 1.46634 0.26236 1.09861 0.40547 33 2.97549 3.62857 0.11279 3.53751 33 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03451 4.03451 1.46634 0.26236 1.09861 0.40547 34 3.12956 2.62116 3.17614 0.17222 34 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03451 4.03451 1.46634 0.26236 1.09861 0.40547 35 3.47958 0.12480 3.52704 2.86271 35 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03451 4.03451 1.46634 0.26236 1.09861 0.40547 36 2.97549 3.62857 0.11279 3.53751 36 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03451 4.03451 1.46634 0.26236 1.09861 0.40547 37 2.97549 3.62857 0.11279 3.53751 37 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03451 4.03451 1.46634 0.26236 1.09861 0.40547 38 3.47958 0.12480 3.52704 2.86271 38 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03451 4.03451 1.46634 0.26236 1.09861 0.40547 39 2.97549 3.62857 0.11279 3.53751 39 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03451 4.03451 1.46634 0.26236 1.09861 0.40547 40 0.13668 3.42064 2.82809 3.32616 40 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03451 4.03451 1.46634 0.26236 1.09861 0.40547 41 3.47958 0.12480 3.52704 2.86271 41 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03451 4.03451 1.46634 0.26236 1.09861 0.40547 42 0.13668 3.42064 2.82809 3.32616 42 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03451 4.03451 1.46634 0.26236 1.09861 0.40547 43 3.12956 2.62116 3.17614 0.17222 43 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03451 4.03451 1.46634 0.26236 1.09861 0.40547 44 3.47958 0.12480 3.52704 2.86271 44 - - 1.38629 1.38629 1.38629 1.38629 0.03603 4.03451 4.03451 1.46634 0.26236 1.09861 0.40547 45 2.97549 3.62857 0.11279 3.53751 45 - - 1.38629 1.38629 1.38629 1.38629 0.01818 4.01666 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Chlorophyta_58S_end_seventeenb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 28 01:10:17 2012 NSEQ 2 EFFN 2.000000 CKSUM 249208300 STATS LOCAL MSV -7.6792 0.72790 STATS LOCAL VITERBI -8.3766 0.72790 STATS LOCAL FORWARD -3.4913 0.72790 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.81799 1.27937 1.06160 1.54396 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.53331 3.02441 0.20344 2.88069 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.57915 2.25909 2.64442 0.28946 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.81865 0.23582 2.88868 2.35662 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.57915 2.25909 2.64442 0.28946 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.57915 2.25909 2.64442 0.28946 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 1.88179 1.10717 1.04597 1.79675 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.81865 0.23582 2.88868 2.35662 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.57915 2.25909 2.64442 0.28946 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.57915 2.25909 2.64442 0.28946 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.81865 0.23582 2.88868 2.35662 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.53331 3.02441 0.20344 2.88069 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.81865 0.23582 2.88868 2.35662 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.57915 2.25909 2.64442 0.28946 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.81865 0.23582 2.88868 2.35662 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.53331 3.02441 0.20344 2.88069 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.53331 3.02441 0.20344 2.88069 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.81865 0.23582 2.88868 2.35662 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.53331 3.02441 0.20344 2.88069 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.23862 2.84929 2.43386 2.70756 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.53331 3.02441 0.20344 2.88069 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.53331 3.02441 0.20344 2.88069 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.23862 2.84929 2.43386 2.70756 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.53331 3.02441 0.20344 2.88069 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 0.23862 2.84929 2.43386 2.70756 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.81865 0.23582 2.88868 2.35662 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.53331 3.02441 0.20344 2.88069 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.53331 3.02441 0.20344 2.88069 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.81865 0.23582 2.88868 2.35662 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.23862 2.84929 2.43386 2.70756 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.57915 2.25909 2.64442 0.28946 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.81865 0.23582 2.88868 2.35662 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.53331 3.02441 0.20344 2.88069 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Chlorophyta_58S_end_six_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 28 01:06:39 2012 NSEQ 17 EFFN 3.980225 CKSUM 2906984672 STATS LOCAL MSV -6.7869 0.71932 STATS LOCAL VITERBI -7.5454 0.71932 STATS LOCAL FORWARD -4.0611 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.85715 1.19405 1.09141 1.58401 1.38629 1.38629 1.38629 1.38629 0.03290 4.12394 4.12394 1.46634 0.26236 0.00000 * 1 3.07541 3.77607 0.09847 3.70103 1 - - 1.38629 1.38629 1.38629 1.38629 0.03290 4.12394 4.12394 1.46634 0.26236 1.09861 0.40547 2 3.64943 0.10712 3.68925 2.98409 2 - - 1.38629 1.38629 1.38629 1.38629 0.03290 4.12394 4.12394 1.46634 0.26236 1.09861 0.40547 3 3.07541 3.77607 0.09847 3.70103 3 - - 1.38629 1.38629 1.38629 1.38629 0.12050 4.12394 2.32951 1.46634 0.26236 1.09861 0.40547 4 2.22469 1.56800 0.55225 2.22762 4 - - 1.38629 1.38629 1.38629 1.38629 0.03586 4.03929 4.03929 1.46634 0.26236 0.28702 1.38830 5 3.28389 2.71903 3.32443 0.15014 5 - - 1.38629 1.38629 1.38629 1.38629 0.03290 4.12394 4.12394 1.46634 0.26236 1.09861 0.40547 6 3.64943 0.10712 3.68925 2.98409 6 - - 1.38629 1.38629 1.38629 1.38629 0.03290 4.12394 4.12394 1.46634 0.26236 1.09861 0.40547 7 3.07541 3.77607 0.09847 3.70103 7 - - 1.38629 1.38629 1.38629 1.38629 0.03290 4.12394 4.12394 1.46634 0.26236 1.09861 0.40547 8 0.28744 2.20718 2.59167 2.73466 8 - - 1.38629 1.38629 1.38629 1.38629 0.03290 4.12394 4.12394 1.46634 0.26236 1.09861 0.40547 9 3.07541 3.77607 0.09847 3.70103 9 - - 1.38629 1.38629 1.38629 1.38629 0.03290 4.12394 4.12394 1.46634 0.26236 1.09861 0.40547 10 3.07541 3.77607 0.09847 3.70103 10 - - 1.38629 1.38629 1.38629 1.38629 0.03290 4.12394 4.12394 1.46634 0.26236 1.09861 0.40547 11 3.64943 0.10712 3.68925 2.98409 11 - - 1.38629 1.38629 1.38629 1.38629 0.03290 4.12394 4.12394 1.46634 0.26236 1.09861 0.40547 12 3.28389 2.71903 3.32443 0.15014 12 - - 1.38629 1.38629 1.38629 1.38629 0.03290 4.12394 4.12394 1.46634 0.26236 1.09861 0.40547 13 2.86749 1.79659 2.92573 0.32342 13 - - 1.38629 1.38629 1.38629 1.38629 0.03290 4.12394 4.12394 1.46634 0.26236 1.09861 0.40547 14 3.64943 0.10712 3.68925 2.98409 14 - - 1.38629 1.38629 1.38629 1.38629 0.03290 4.12394 4.12394 1.46634 0.26236 1.09861 0.40547 15 3.07541 3.77607 0.09847 3.70103 15 - - 1.38629 1.38629 1.38629 1.38629 0.03290 4.12394 4.12394 1.46634 0.26236 1.09861 0.40547 16 3.07541 3.77607 0.09847 3.70103 16 - - 1.38629 1.38629 1.38629 1.38629 0.03290 4.12394 4.12394 1.46634 0.26236 1.09861 0.40547 17 3.64943 0.10712 3.68925 2.98409 17 - - 1.38629 1.38629 1.38629 1.38629 0.03290 4.12394 4.12394 1.46634 0.26236 1.09861 0.40547 18 3.64943 0.10712 3.68925 2.98409 18 - - 1.38629 1.38629 1.38629 1.38629 0.03290 4.12394 4.12394 1.46634 0.26236 1.09861 0.40547 19 0.33002 2.97170 1.76064 2.84832 19 - - 1.38629 1.38629 1.38629 1.38629 0.03290 4.12394 4.12394 1.46634 0.26236 1.09861 0.40547 20 0.11925 3.56948 2.92381 3.48959 20 - - 1.38629 1.38629 1.38629 1.38629 0.03290 4.12394 4.12394 1.46634 0.26236 1.09861 0.40547 21 3.07541 3.77607 0.09847 3.70103 21 - - 1.38629 1.38629 1.38629 1.38629 0.03290 4.12394 4.12394 1.46634 0.26236 1.09861 0.40547 22 0.11925 3.56948 2.92381 3.48959 22 - - 1.38629 1.38629 1.38629 1.38629 0.03290 4.12394 4.12394 1.46634 0.26236 1.09861 0.40547 23 2.40105 0.49799 1.64417 2.22143 23 - - 1.38629 1.38629 1.38629 1.38629 0.03290 4.12394 4.12394 1.46634 0.26236 1.09861 0.40547 24 3.64943 0.10712 3.68925 2.98409 24 - - 1.38629 1.38629 1.38629 1.38629 0.03290 4.12394 4.12394 1.46634 0.26236 1.09861 0.40547 25 0.11925 3.56948 2.92381 3.48959 25 - - 1.38629 1.38629 1.38629 1.38629 0.03290 4.12394 4.12394 1.46634 0.26236 1.09861 0.40547 26 3.28389 2.71903 3.32443 0.15014 26 - - 1.38629 1.38629 1.38629 1.38629 0.03290 4.12394 4.12394 1.46634 0.26236 1.09861 0.40547 27 3.07541 3.77607 0.09847 3.70103 27 - - 1.38629 1.38629 1.38629 1.38629 0.03290 4.12394 4.12394 1.46634 0.26236 1.09861 0.40547 28 3.28389 2.71903 3.32443 0.15014 28 - - 1.38629 1.38629 1.38629 1.38629 0.03290 4.12394 4.12394 1.46634 0.26236 1.09861 0.40547 29 3.17166 0.22292 3.22923 2.13454 29 - - 1.38629 1.38629 1.38629 1.38629 0.03290 4.12394 4.12394 1.46634 0.26236 1.09861 0.40547 30 3.28389 2.71903 3.32443 0.15014 30 - - 1.38629 1.38629 1.38629 1.38629 0.03290 4.12394 4.12394 1.46634 0.26236 1.09861 0.40547 31 3.07541 3.77607 0.09847 3.70103 31 - - 1.38629 1.38629 1.38629 1.38629 0.03290 4.12394 4.12394 1.46634 0.26236 1.09861 0.40547 32 3.64943 0.10712 3.68925 2.98409 32 - - 1.38629 1.38629 1.38629 1.38629 0.03290 4.12394 4.12394 1.46634 0.26236 1.09861 0.40547 33 3.64943 0.10712 3.68925 2.98409 33 - - 1.38629 1.38629 1.38629 1.38629 0.03290 4.12394 4.12394 1.46634 0.26236 1.09861 0.40547 34 3.28389 2.71903 3.32443 0.15014 34 - - 1.38629 1.38629 1.38629 1.38629 0.03290 4.12394 4.12394 1.46634 0.26236 1.09861 0.40547 35 3.64943 0.10712 3.68925 2.98409 35 - - 1.38629 1.38629 1.38629 1.38629 0.03290 4.12394 4.12394 1.46634 0.26236 1.09861 0.40547 36 0.11925 3.56948 2.92381 3.48959 36 - - 1.38629 1.38629 1.38629 1.38629 0.03290 4.12394 4.12394 1.46634 0.26236 1.09861 0.40547 37 3.07541 3.77607 0.09847 3.70103 37 - - 1.38629 1.38629 1.38629 1.38629 0.03290 4.12394 4.12394 1.46634 0.26236 1.09861 0.40547 38 3.64943 0.10712 3.68925 2.98409 38 - - 1.38629 1.38629 1.38629 1.38629 0.03290 4.12394 4.12394 1.46634 0.26236 1.09861 0.40547 39 3.07541 3.77607 0.09847 3.70103 39 - - 1.38629 1.38629 1.38629 1.38629 0.03290 4.12394 4.12394 1.46634 0.26236 1.09861 0.40547 40 3.28389 2.71903 3.32443 0.15014 40 - - 1.38629 1.38629 1.38629 1.38629 0.03290 4.12394 4.12394 1.46634 0.26236 1.09861 0.40547 41 3.64943 0.10712 3.68925 2.98409 41 - - 1.38629 1.38629 1.38629 1.38629 0.03290 4.12394 4.12394 1.46634 0.26236 1.09861 0.40547 42 3.07541 3.77607 0.09847 3.70103 42 - - 1.38629 1.38629 1.38629 1.38629 0.03290 4.12394 4.12394 1.46634 0.26236 1.09861 0.40547 43 3.07541 3.77607 0.09847 3.70103 43 - - 1.38629 1.38629 1.38629 1.38629 0.03290 4.12394 4.12394 1.46634 0.26236 1.09861 0.40547 44 2.38060 2.30790 1.57434 0.50934 44 - - 1.38629 1.38629 1.38629 1.38629 0.03290 4.12394 4.12394 1.46634 0.26236 1.09861 0.40547 45 2.34746 2.51922 0.48655 1.56482 45 - - 1.38629 1.38629 1.38629 1.38629 0.01658 4.10763 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Chlorophyta_58S_end_sixteena_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 28 01:09:41 2012 NSEQ 6 EFFN 3.260742 CKSUM 3078536325 STATS LOCAL MSV -8.1805 0.71933 STATS LOCAL VITERBI -7.9042 0.71933 STATS LOCAL FORWARD -3.9223 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.82150 1.14689 1.17178 1.55695 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 0.00000 * 1 3.41001 0.13300 3.46044 2.81215 1 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 2 2.93350 3.56738 0.11941 3.46995 2 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 3 3.06843 2.58230 3.11735 0.18196 3 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 4 3.41001 0.13300 3.46044 2.81215 4 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 5 3.41001 0.13300 3.46044 2.81215 5 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 6 3.41001 0.13300 3.46044 2.81215 6 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 7 3.06843 2.58230 3.11735 0.18196 7 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 8 3.06843 2.58230 3.11735 0.18196 8 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 9 3.41001 0.13300 3.46044 2.81215 9 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 10 2.93350 3.56738 0.11941 3.46995 10 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 11 3.41001 0.13300 3.46044 2.81215 11 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 12 0.14457 3.36023 2.78889 3.26000 12 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 13 2.93350 3.56738 0.11941 3.46995 13 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 14 3.41001 0.13300 3.46044 2.81215 14 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 15 3.06843 2.58230 3.11735 0.18196 15 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 16 3.06843 2.58230 3.11735 0.18196 16 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 17 3.41001 0.13300 3.46044 2.81215 17 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 18 2.13978 2.25773 0.68256 1.30045 18 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 19 2.93350 3.56738 0.11941 3.46995 19 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 20 3.06843 2.58230 3.11735 0.18196 20 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 21 3.06843 2.58230 3.11735 0.18196 21 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 22 2.93350 3.56738 0.11941 3.46995 22 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 23 3.41001 0.13300 3.46044 2.81215 23 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 24 0.14457 3.36023 2.78889 3.26000 24 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 25 0.14457 3.36023 2.78889 3.26000 25 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 26 2.93350 3.56738 0.11941 3.46995 26 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 27 2.93350 3.56738 0.11941 3.46995 27 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 28 2.93350 3.56738 0.11941 3.46995 28 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 29 2.93350 3.56738 0.11941 3.46995 29 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 30 3.41001 0.13300 3.46044 2.81215 30 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 31 2.93350 3.56738 0.11941 3.46995 31 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 32 3.41001 0.13300 3.46044 2.81215 32 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 33 2.93350 3.56738 0.11941 3.46995 33 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 34 3.06843 2.58230 3.11735 0.18196 34 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 35 3.41001 0.13300 3.46044 2.81215 35 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 36 2.93350 3.56738 0.11941 3.46995 36 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 37 2.93350 3.56738 0.11941 3.46995 37 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 38 3.41001 0.13300 3.46044 2.81215 38 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 39 0.14457 3.36023 2.78889 3.26000 39 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 40 0.14457 3.36023 2.78889 3.26000 40 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 41 3.41001 0.13300 3.46044 2.81215 41 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 42 0.14457 3.36023 2.78889 3.26000 42 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 43 3.06843 2.58230 3.11735 0.18196 43 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 44 3.41001 0.13300 3.46044 2.81215 44 - - 1.38629 1.38629 1.38629 1.38629 0.03731 4.00017 4.00017 1.46634 0.26236 1.09861 0.40547 45 2.93350 3.56738 0.11941 3.46995 45 - - 1.38629 1.38629 1.38629 1.38629 0.01883 3.98169 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Chlorophyta_58S_end_sixteenb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 28 01:09:50 2012 NSEQ 3 EFFN 3.000000 CKSUM 3471750801 STATS LOCAL MSV -8.0728 0.71994 STATS LOCAL VITERBI -7.9293 0.71994 STATS LOCAL FORWARD -3.8206 0.71994 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.81571 1.20993 1.15028 1.50278 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 2.97980 2.52563 3.03204 0.19727 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 3.30705 0.14631 3.36166 2.73626 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 3.30705 0.14631 3.36166 2.73626 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 3.30705 0.14631 3.36166 2.73626 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 2.97980 2.52563 3.03204 0.19727 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 2.97980 2.52563 3.03204 0.19727 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 3.30705 0.14631 3.36166 2.73626 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 2.86982 3.47591 0.13017 3.36931 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 3.30705 0.14631 3.36166 2.73626 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 0.15719 3.27118 2.73043 3.16274 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 2.86982 3.47591 0.13017 3.36931 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 2.97980 2.52563 3.03204 0.19727 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 3.30705 0.14631 3.36166 2.73626 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 2.97980 2.52563 3.03204 0.19727 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 2.97980 2.52563 3.03204 0.19727 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 3.30705 0.14631 3.36166 2.73626 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 2.86982 3.47591 0.13017 3.36931 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 2.86982 3.47591 0.13017 3.36931 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 2.86982 3.47591 0.13017 3.36931 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 2.97980 2.52563 3.03204 0.19727 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 2.97980 2.52563 3.03204 0.19727 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 2.86982 3.47591 0.13017 3.36931 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 3.30705 0.14631 3.36166 2.73626 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 0.15719 3.27118 2.73043 3.16274 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 0.15719 3.27118 2.73043 3.16274 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 2.86982 3.47591 0.13017 3.36931 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 2.86982 3.47591 0.13017 3.36931 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 2.86982 3.47591 0.13017 3.36931 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 2.86982 3.47591 0.13017 3.36931 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 3.30705 0.14631 3.36166 2.73626 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 2.86982 3.47591 0.13017 3.36931 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 3.30705 0.14631 3.36166 2.73626 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 2.86982 3.47591 0.13017 3.36931 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 2.97980 2.52563 3.03204 0.19727 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 3.30705 0.14631 3.36166 2.73626 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 2.86982 3.47591 0.13017 3.36931 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 2.86982 3.47591 0.13017 3.36931 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 3.30705 0.14631 3.36166 2.73626 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 0.15719 3.27118 2.73043 3.16274 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 0.15719 3.27118 2.73043 3.16274 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 3.30705 0.14631 3.36166 2.73626 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 0.15719 3.27118 2.73043 3.16274 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 2.97980 2.52563 3.03204 0.19727 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 3.30705 0.14631 3.36166 2.73626 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 2.86982 3.47591 0.13017 3.36931 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Chlorophyta_58S_end_sixteenc_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 28 01:09:56 2012 NSEQ 2 EFFN 2.000000 CKSUM 4112059469 STATS LOCAL MSV -7.5858 0.72737 STATS LOCAL VITERBI -8.4289 0.72737 STATS LOCAL FORWARD -3.3634 0.72737 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.74703 1.19425 1.17291 1.54500 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.57915 2.25909 2.64442 0.28946 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.81865 0.23582 2.88868 2.35662 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.81865 0.23582 2.88868 2.35662 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.57915 2.25909 2.64442 0.28946 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.57915 2.25909 2.64442 0.28946 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.81865 0.23582 2.88868 2.35662 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.53331 3.02441 0.20344 2.88069 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.81865 0.23582 2.88868 2.35662 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 0.23862 2.84929 2.43386 2.70756 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.53331 3.02441 0.20344 2.88069 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.81865 0.23582 2.88868 2.35662 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.57915 2.25909 2.64442 0.28946 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.81865 0.23582 2.88868 2.35662 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.81865 0.23582 2.88868 2.35662 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.53331 3.02441 0.20344 2.88069 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.53331 3.02441 0.20344 2.88069 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.57915 2.25909 2.64442 0.28946 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.57915 2.25909 2.64442 0.28946 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.81865 0.23582 2.88868 2.35662 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 0.23862 2.84929 2.43386 2.70756 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.53331 3.02441 0.20344 2.88069 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.53331 3.02441 0.20344 2.88069 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.53331 3.02441 0.20344 2.88069 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.81865 0.23582 2.88868 2.35662 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.53331 3.02441 0.20344 2.88069 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.53331 3.02441 0.20344 2.88069 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.81865 0.23582 2.88868 2.35662 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.23862 2.84929 2.43386 2.70756 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.23862 2.84929 2.43386 2.70756 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.57915 2.25909 2.64442 0.28946 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.81865 0.23582 2.88868 2.35662 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.53331 3.02441 0.20344 2.88069 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Chlorophyta_58S_end_tena_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 28 01:07:19 2012 NSEQ 2 EFFN 2.000000 CKSUM 591123521 STATS LOCAL MSV -7.5741 0.72700 STATS LOCAL VITERBI -8.3318 0.72700 STATS LOCAL FORWARD -3.2610 0.72700 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.74607 1.20240 1.07782 1.68885 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.53331 3.02441 0.20344 2.88069 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.81865 0.23582 2.88868 2.35662 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.53331 3.02441 0.20344 2.88069 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.81865 0.23582 2.88868 2.35662 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.81865 0.23582 2.88868 2.35662 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.53331 3.02441 0.20344 2.88069 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 0.23862 2.84929 2.43386 2.70756 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.81865 0.23582 2.88868 2.35662 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.57915 2.25909 2.64442 0.28946 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.57915 2.25909 2.64442 0.28946 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.81865 0.23582 2.88868 2.35662 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.81865 0.23582 2.88868 2.35662 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 0.23862 2.84929 2.43386 2.70756 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.57915 2.25909 2.64442 0.28946 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.81865 0.23582 2.88868 2.35662 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.53331 3.02441 0.20344 2.88069 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.81865 0.23582 2.88868 2.35662 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.23862 2.84929 2.43386 2.70756 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.53331 3.02441 0.20344 2.88069 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.81865 0.23582 2.88868 2.35662 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.53331 3.02441 0.20344 2.88069 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Chlorophyta_58S_end_tenb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 28 01:07:25 2012 NSEQ 5 EFFN 3.247070 CKSUM 2521986931 STATS LOCAL MSV -8.1587 0.71933 STATS LOCAL VITERBI -7.8377 0.71933 STATS LOCAL FORWARD -3.8876 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.67141 1.26560 1.12663 1.58072 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 0.00000 * 1 2.93035 3.56282 0.11992 3.46492 1 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 2 3.40484 0.13363 3.45549 2.80837 2 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 3 0.14518 3.35575 2.78597 3.25510 3 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 4 3.40484 0.13363 3.45549 2.80837 4 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 5 3.06393 2.57943 3.11303 0.18271 5 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 6 3.40484 0.13363 3.45549 2.80837 6 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 7 2.93035 3.56282 0.11992 3.46492 7 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 8 0.14518 3.35575 2.78597 3.25510 8 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 9 2.93035 3.56282 0.11992 3.46492 9 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 10 2.93035 3.56282 0.11992 3.46492 10 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 11 3.40484 0.13363 3.45549 2.80837 11 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 12 3.06393 2.57943 3.11303 0.18271 12 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 13 3.06393 2.57943 3.11303 0.18271 13 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 14 3.40484 0.13363 3.45549 2.80837 14 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 15 2.93035 3.56282 0.11992 3.46492 15 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 16 2.93035 3.56282 0.11992 3.46492 16 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 17 3.40484 0.13363 3.45549 2.80837 17 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 18 3.40484 0.13363 3.45549 2.80837 18 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 19 0.64364 2.54320 1.18656 2.39976 19 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 20 0.14518 3.35575 2.78597 3.25510 20 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 21 2.93035 3.56282 0.11992 3.46492 21 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 22 0.14518 3.35575 2.78597 3.25510 22 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 23 2.93035 3.56282 0.11992 3.46492 23 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 24 3.06393 2.57943 3.11303 0.18271 24 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 25 0.14518 3.35575 2.78597 3.25510 25 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 26 3.06393 2.57943 3.11303 0.18271 26 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 27 2.93035 3.56282 0.11992 3.46492 27 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 28 3.40484 0.13363 3.45549 2.80837 28 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 29 3.40484 0.13363 3.45549 2.80837 29 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 30 3.06393 2.57943 3.11303 0.18271 30 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 31 2.93035 3.56282 0.11992 3.46492 31 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 32 3.40484 0.13363 3.45549 2.80837 32 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 33 3.40484 0.13363 3.45549 2.80837 33 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 34 3.06393 2.57943 3.11303 0.18271 34 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 35 2.93035 3.56282 0.11992 3.46492 35 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 36 0.14518 3.35575 2.78597 3.25510 36 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 37 2.93035 3.56282 0.11992 3.46492 37 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 38 3.40484 0.13363 3.45549 2.80837 38 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 39 2.93035 3.56282 0.11992 3.46492 39 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 40 3.06393 2.57943 3.11303 0.18271 40 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 41 3.40484 0.13363 3.45549 2.80837 41 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 42 0.14518 3.35575 2.78597 3.25510 42 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 43 2.93035 3.56282 0.11992 3.46492 43 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 44 3.06393 2.57943 3.11303 0.18271 44 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 45 2.93035 3.56282 0.11992 3.46492 45 - - 1.38629 1.38629 1.38629 1.38629 0.01888 3.97913 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Chlorophyta_58S_end_tenc_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 28 01:07:32 2012 NSEQ 2 EFFN 2.000000 CKSUM 3208501958 STATS LOCAL MSV -7.5772 0.72723 STATS LOCAL VITERBI -8.1443 0.72723 STATS LOCAL FORWARD -3.3746 0.72723 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.74235 1.29869 1.07600 1.55568 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.53331 3.02441 0.20344 2.88069 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.81865 0.23582 2.88868 2.35662 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.53331 3.02441 0.20344 2.88069 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.57915 2.25909 2.64442 0.28946 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.81865 0.23582 2.88868 2.35662 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.53331 3.02441 0.20344 2.88069 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 0.23862 2.84929 2.43386 2.70756 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.81865 0.23582 2.88868 2.35662 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.57915 2.25909 2.64442 0.28946 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.57915 2.25909 2.64442 0.28946 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.81865 0.23582 2.88868 2.35662 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.81865 0.23582 2.88868 2.35662 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.23862 2.84929 2.43386 2.70756 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.57915 2.25909 2.64442 0.28946 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.81865 0.23582 2.88868 2.35662 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.53331 3.02441 0.20344 2.88069 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.23862 2.84929 2.43386 2.70756 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.53331 3.02441 0.20344 2.88069 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.81865 0.23582 2.88868 2.35662 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.53331 3.02441 0.20344 2.88069 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Chlorophyta_58S_end_thirteen_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 28 01:08:41 2012 NSEQ 2 EFFN 2.000000 CKSUM 1843024009 STATS LOCAL MSV -7.3966 0.72771 STATS LOCAL VITERBI -8.2127 0.72771 STATS LOCAL FORWARD -3.4704 0.72771 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.82835 1.28871 1.17034 1.37265 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.57915 2.25909 2.64442 0.28946 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.57915 2.25909 2.64442 0.28946 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.53331 3.02441 0.20344 2.88069 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.53331 3.02441 0.20344 2.88069 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.53331 3.02441 0.20344 2.88069 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.57915 2.25909 2.64442 0.28946 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.53331 3.02441 0.20344 2.88069 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.57915 2.25909 2.64442 0.28946 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.53331 3.02441 0.20344 2.88069 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.81865 0.23582 2.88868 2.35662 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.81865 0.23582 2.88868 2.35662 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.81865 0.23582 2.88868 2.35662 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.53331 3.02441 0.20344 2.88069 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 0.23862 2.84929 2.43386 2.70756 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.57915 2.25909 2.64442 0.28946 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.81865 0.23582 2.88868 2.35662 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 0.23862 2.84929 2.43386 2.70756 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.81865 0.23582 2.88868 2.35662 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.57915 2.25909 2.64442 0.28946 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.81865 0.23582 2.88868 2.35662 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.81865 0.23582 2.88868 2.35662 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.53331 3.02441 0.20344 2.88069 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.53331 3.02441 0.20344 2.88069 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.23862 2.84929 2.43386 2.70756 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.53331 3.02441 0.20344 2.88069 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Chlorophyta_58S_end_three_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 28 01:05:03 2012 NSEQ 36 EFFN 3.177246 CKSUM 3671677378 STATS LOCAL MSV -8.0233 0.71932 STATS LOCAL VITERBI -7.5418 0.71932 STATS LOCAL FORWARD -3.8393 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.73557 1.15352 1.14079 1.66808 1.38629 1.38629 1.38629 1.38629 0.03790 3.98476 3.98476 1.46634 0.26236 0.00000 * 1 2.91395 3.53912 0.12262 3.43880 1 - - 1.38629 1.38629 1.38629 1.38629 0.03790 3.98476 3.98476 1.46634 0.26236 1.09861 0.40547 2 3.37805 0.13697 3.42981 2.78874 2 - - 1.38629 1.38629 1.38629 1.38629 0.03790 3.98476 3.98476 1.46634 0.26236 1.09861 0.40547 3 2.91395 3.53912 0.12262 3.43880 3 - - 1.38629 1.38629 1.38629 1.38629 0.03790 3.98476 3.98476 1.46634 0.26236 1.09861 0.40547 4 3.37805 0.13697 3.42981 2.78874 4 - - 1.38629 1.38629 1.38629 1.38629 0.03790 3.98476 3.98476 1.46634 0.26236 1.09861 0.40547 5 3.04070 2.56462 3.09068 0.18660 5 - - 1.38629 1.38629 1.38629 1.38629 0.03790 3.98476 3.98476 1.46634 0.26236 1.09861 0.40547 6 3.37805 0.13697 3.42981 2.78874 6 - - 1.38629 1.38629 1.38629 1.38629 0.03790 3.98476 3.98476 1.46634 0.26236 1.09861 0.40547 7 2.91395 3.53912 0.12262 3.43880 7 - - 1.38629 1.38629 1.38629 1.38629 0.03790 3.98476 3.98476 1.46634 0.26236 1.09861 0.40547 8 0.14836 3.33255 2.77082 3.22974 8 - - 1.38629 1.38629 1.38629 1.38629 0.03790 3.98476 3.98476 1.46634 0.26236 1.09861 0.40547 9 2.91395 3.53912 0.12262 3.43880 9 - - 1.38629 1.38629 1.38629 1.38629 0.03790 3.98476 3.98476 1.46634 0.26236 1.09861 0.40547 10 2.91395 3.53912 0.12262 3.43880 10 - - 1.38629 1.38629 1.38629 1.38629 0.03790 3.98476 3.98476 1.46634 0.26236 1.09861 0.40547 11 3.37805 0.13697 3.42981 2.78874 11 - - 1.38629 1.38629 1.38629 1.38629 0.03790 3.98476 3.98476 1.46634 0.26236 1.09861 0.40547 12 3.04070 2.56462 3.09068 0.18660 12 - - 1.38629 1.38629 1.38629 1.38629 0.03790 3.98476 3.98476 1.46634 0.26236 1.09861 0.40547 13 2.83286 2.10204 2.89003 0.27001 13 - - 1.38629 1.38629 1.38629 1.38629 0.03790 3.98476 3.98476 1.46634 0.26236 1.09861 0.40547 14 3.37805 0.13697 3.42981 2.78874 14 - - 1.38629 1.38629 1.38629 1.38629 0.03790 3.98476 3.98476 1.46634 0.26236 1.09861 0.40547 15 2.91395 3.53912 0.12262 3.43880 15 - - 1.38629 1.38629 1.38629 1.38629 0.03790 3.98476 3.98476 1.46634 0.26236 1.09861 0.40547 16 2.91395 3.53912 0.12262 3.43880 16 - - 1.38629 1.38629 1.38629 1.38629 0.03790 3.98476 3.98476 1.46634 0.26236 1.09861 0.40547 17 3.37805 0.13697 3.42981 2.78874 17 - - 1.38629 1.38629 1.38629 1.38629 0.03790 3.98476 3.98476 1.46634 0.26236 1.09861 0.40547 18 3.37805 0.13697 3.42981 2.78874 18 - - 1.38629 1.38629 1.38629 1.38629 0.03790 3.98476 3.98476 1.46634 0.26236 1.09861 0.40547 19 0.24927 3.01762 2.14913 2.89812 19 - - 1.38629 1.38629 1.38629 1.38629 0.03790 3.98476 3.98476 1.46634 0.26236 1.09861 0.40547 20 0.14836 3.33255 2.77082 3.22974 20 - - 1.38629 1.38629 1.38629 1.38629 0.03790 3.98476 3.98476 1.46634 0.26236 1.09861 0.40547 21 2.91395 3.53912 0.12262 3.43880 21 - - 1.38629 1.38629 1.38629 1.38629 0.03790 3.98476 3.98476 1.46634 0.26236 1.09861 0.40547 22 0.14836 3.33255 2.77082 3.22974 22 - - 1.38629 1.38629 1.38629 1.38629 0.03790 3.98476 3.98476 1.46634 0.26236 1.09861 0.40547 23 2.91395 3.53912 0.12262 3.43880 23 - - 1.38629 1.38629 1.38629 1.38629 0.03790 3.98476 3.98476 1.46634 0.26236 1.09861 0.40547 24 3.37805 0.13697 3.42981 2.78874 24 - - 1.38629 1.38629 1.38629 1.38629 0.03790 3.98476 3.98476 1.46634 0.26236 1.09861 0.40547 25 0.14836 3.33255 2.77082 3.22974 25 - - 1.38629 1.38629 1.38629 1.38629 0.03790 3.98476 3.98476 1.46634 0.26236 1.09861 0.40547 26 3.04070 2.56462 3.09068 0.18660 26 - - 1.38629 1.38629 1.38629 1.38629 0.03790 3.98476 3.98476 1.46634 0.26236 1.09861 0.40547 27 2.91395 3.53912 0.12262 3.43880 27 - - 1.38629 1.38629 1.38629 1.38629 0.03790 3.98476 3.98476 1.46634 0.26236 1.09861 0.40547 28 3.04070 2.56462 3.09068 0.18660 28 - - 1.38629 1.38629 1.38629 1.38629 0.03790 3.98476 3.98476 1.46634 0.26236 1.09861 0.40547 29 3.37805 0.13697 3.42981 2.78874 29 - - 1.38629 1.38629 1.38629 1.38629 0.03790 3.98476 3.98476 1.46634 0.26236 1.09861 0.40547 30 3.04070 2.56462 3.09068 0.18660 30 - - 1.38629 1.38629 1.38629 1.38629 0.03790 3.98476 3.98476 1.46634 0.26236 1.09861 0.40547 31 2.91395 3.53912 0.12262 3.43880 31 - - 1.38629 1.38629 1.38629 1.38629 0.03790 3.98476 3.98476 1.46634 0.26236 1.09861 0.40547 32 3.37805 0.13697 3.42981 2.78874 32 - - 1.38629 1.38629 1.38629 1.38629 0.03790 3.98476 3.98476 1.46634 0.26236 1.09861 0.40547 33 3.37805 0.13697 3.42981 2.78874 33 - - 1.38629 1.38629 1.38629 1.38629 0.03790 3.98476 3.98476 1.46634 0.26236 1.09861 0.40547 34 3.04070 2.56462 3.09068 0.18660 34 - - 1.38629 1.38629 1.38629 1.38629 0.03790 3.98476 3.98476 1.46634 0.26236 1.09861 0.40547 35 3.37805 0.13697 3.42981 2.78874 35 - - 1.38629 1.38629 1.38629 1.38629 0.03790 3.98476 3.98476 1.46634 0.26236 1.09861 0.40547 36 0.14836 3.33255 2.77082 3.22974 36 - - 1.38629 1.38629 1.38629 1.38629 0.03790 3.98476 3.98476 1.46634 0.26236 1.09861 0.40547 37 2.91395 3.53912 0.12262 3.43880 37 - - 1.38629 1.38629 1.38629 1.38629 0.03790 3.98476 3.98476 1.46634 0.26236 1.09861 0.40547 38 3.37805 0.13697 3.42981 2.78874 38 - - 1.38629 1.38629 1.38629 1.38629 0.03790 3.98476 3.98476 1.46634 0.26236 1.09861 0.40547 39 2.91395 3.53912 0.12262 3.43880 39 - - 1.38629 1.38629 1.38629 1.38629 0.03790 3.98476 3.98476 1.46634 0.26236 1.09861 0.40547 40 3.04070 2.56462 3.09068 0.18660 40 - - 1.38629 1.38629 1.38629 1.38629 0.03790 3.98476 3.98476 1.46634 0.26236 1.09861 0.40547 41 3.37805 0.13697 3.42981 2.78874 41 - - 1.38629 1.38629 1.38629 1.38629 0.03790 3.98476 3.98476 1.46634 0.26236 1.09861 0.40547 42 2.91395 3.53912 0.12262 3.43880 42 - - 1.38629 1.38629 1.38629 1.38629 0.03790 3.98476 3.98476 1.46634 0.26236 1.09861 0.40547 43 2.91395 3.53912 0.12262 3.43880 43 - - 1.38629 1.38629 1.38629 1.38629 0.03790 3.98476 3.98476 1.46634 0.26236 1.09861 0.40547 44 3.37805 0.13697 3.42981 2.78874 44 - - 1.38629 1.38629 1.38629 1.38629 0.03790 3.98476 3.98476 1.46634 0.26236 1.09861 0.40547 45 0.14836 3.33255 2.77082 3.22974 45 - - 1.38629 1.38629 1.38629 1.38629 0.01913 3.96599 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Chlorophyta_58S_end_twelve_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 28 01:08:30 2012 NSEQ 4 EFFN 3.300781 CKSUM 2752840731 STATS LOCAL MSV -8.1722 0.71931 STATS LOCAL VITERBI -7.4014 0.71931 STATS LOCAL FORWARD -3.9277 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.77926 1.32153 1.11938 1.43537 1.38629 1.38629 1.38629 1.38629 0.03704 4.00748 4.00748 1.46634 0.26236 0.00000 * 1 2.94261 3.58061 0.11794 3.48454 1 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00748 4.00748 1.46634 0.26236 1.09861 0.40547 2 3.42500 0.13118 3.47480 2.82309 2 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00748 4.00748 1.46634 0.26236 1.09861 0.40547 3 2.94261 3.58061 0.11794 3.48454 3 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00748 4.00748 1.46634 0.26236 1.09861 0.40547 4 3.42500 0.13118 3.47480 2.82309 4 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00748 4.00748 1.46634 0.26236 1.09861 0.40547 5 3.42500 0.13118 3.47480 2.82309 5 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00748 4.00748 1.46634 0.26236 1.09861 0.40547 6 3.08151 2.59063 3.12994 0.17982 6 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00748 4.00748 1.46634 0.26236 1.09861 0.40547 7 2.94261 3.58061 0.11794 3.48454 7 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00748 4.00748 1.46634 0.26236 1.09861 0.40547 8 0.14283 3.37323 2.79735 3.27422 8 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00748 4.00748 1.46634 0.26236 1.09861 0.40547 9 2.94261 3.58061 0.11794 3.48454 9 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00748 4.00748 1.46634 0.26236 1.09861 0.40547 10 2.94261 3.58061 0.11794 3.48454 10 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00748 4.00748 1.46634 0.26236 1.09861 0.40547 11 3.08151 2.59063 3.12994 0.17982 11 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00748 4.00748 1.46634 0.26236 1.09861 0.40547 12 3.42500 0.13118 3.47480 2.82309 12 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00748 4.00748 1.46634 0.26236 1.09861 0.40547 13 3.08151 2.59063 3.12994 0.17982 13 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00748 4.00748 1.46634 0.26236 1.09861 0.40547 14 0.14283 3.37323 2.79735 3.27422 14 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00748 4.00748 1.46634 0.26236 1.09861 0.40547 15 2.94261 3.58061 0.11794 3.48454 15 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00748 4.00748 1.46634 0.26236 1.09861 0.40547 16 2.94261 3.58061 0.11794 3.48454 16 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00748 4.00748 1.46634 0.26236 1.09861 0.40547 17 3.42500 0.13118 3.47480 2.82309 17 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00748 4.00748 1.46634 0.26236 1.09861 0.40547 18 3.42500 0.13118 3.47480 2.82309 18 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00748 4.00748 1.46634 0.26236 1.09861 0.40547 19 0.86244 2.51162 0.90909 2.36616 19 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00748 4.00748 1.46634 0.26236 1.09861 0.40547 20 0.14283 3.37323 2.79735 3.27422 20 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00748 4.00748 1.46634 0.26236 1.09861 0.40547 21 0.14283 3.37323 2.79735 3.27422 21 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00748 4.00748 1.46634 0.26236 1.09861 0.40547 22 2.94261 3.58061 0.11794 3.48454 22 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00748 4.00748 1.46634 0.26236 1.09861 0.40547 23 2.94261 3.58061 0.11794 3.48454 23 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00748 4.00748 1.46634 0.26236 1.09861 0.40547 24 3.42500 0.13118 3.47480 2.82309 24 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00748 4.00748 1.46634 0.26236 1.09861 0.40547 25 0.14283 3.37323 2.79735 3.27422 25 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00748 4.00748 1.46634 0.26236 1.09861 0.40547 26 3.08151 2.59063 3.12994 0.17982 26 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00748 4.00748 1.46634 0.26236 1.09861 0.40547 27 2.94261 3.58061 0.11794 3.48454 27 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00748 4.00748 1.46634 0.26236 1.09861 0.40547 28 3.08151 2.59063 3.12994 0.17982 28 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00748 4.00748 1.46634 0.26236 1.09861 0.40547 29 3.42500 0.13118 3.47480 2.82309 29 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00748 4.00748 1.46634 0.26236 1.09861 0.40547 30 3.08151 2.59063 3.12994 0.17982 30 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00748 4.00748 1.46634 0.26236 1.09861 0.40547 31 2.94261 3.58061 0.11794 3.48454 31 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00748 4.00748 1.46634 0.26236 1.09861 0.40547 32 2.94261 3.58061 0.11794 3.48454 32 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00748 4.00748 1.46634 0.26236 1.09861 0.40547 33 3.42500 0.13118 3.47480 2.82309 33 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00748 4.00748 1.46634 0.26236 1.09861 0.40547 34 3.08151 2.59063 3.12994 0.17982 34 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00748 4.00748 1.46634 0.26236 1.09861 0.40547 35 3.42500 0.13118 3.47480 2.82309 35 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00748 4.00748 1.46634 0.26236 1.09861 0.40547 36 0.14283 3.37323 2.79735 3.27422 36 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00748 4.00748 1.46634 0.26236 1.09861 0.40547 37 2.94261 3.58061 0.11794 3.48454 37 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00748 4.00748 1.46634 0.26236 1.09861 0.40547 38 3.42500 0.13118 3.47480 2.82309 38 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00748 4.00748 1.46634 0.26236 1.09861 0.40547 39 2.94261 3.58061 0.11794 3.48454 39 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00748 4.00748 1.46634 0.26236 1.09861 0.40547 40 3.08151 2.59063 3.12994 0.17982 40 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00748 4.00748 1.46634 0.26236 1.09861 0.40547 41 3.42500 0.13118 3.47480 2.82309 41 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00748 4.00748 1.46634 0.26236 1.09861 0.40547 42 2.94261 3.58061 0.11794 3.48454 42 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00748 4.00748 1.46634 0.26236 1.09861 0.40547 43 3.08151 2.59063 3.12994 0.17982 43 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00748 4.00748 1.46634 0.26236 1.09861 0.40547 44 3.08151 2.59063 3.12994 0.17982 44 - - 1.38629 1.38629 1.38629 1.38629 0.03704 4.00748 4.00748 1.46634 0.26236 1.09861 0.40547 45 3.08151 2.59063 3.12994 0.17982 45 - - 1.38629 1.38629 1.38629 1.38629 0.01869 3.98913 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Chlorophyta_58S_end_twoa_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 28 01:04:32 2012 NSEQ 2 EFFN 2.000000 CKSUM 2739376932 STATS LOCAL MSV -7.4352 0.72757 STATS LOCAL VITERBI -8.2244 0.72757 STATS LOCAL FORWARD -3.3792 0.72757 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.66657 1.24078 1.21694 1.48806 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.53331 3.02441 0.20344 2.88069 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.81865 0.23582 2.88868 2.35662 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.53331 3.02441 0.20344 2.88069 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.81865 0.23582 2.88868 2.35662 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.81865 0.23582 2.88868 2.35662 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 0.23862 2.84929 2.43386 2.70756 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 0.23862 2.84929 2.43386 2.70756 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 0.23862 2.84929 2.43386 2.70756 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.81865 0.23582 2.88868 2.35662 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.57915 2.25909 2.64442 0.28946 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.57915 2.25909 2.64442 0.28946 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.81865 0.23582 2.88868 2.35662 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.57915 2.25909 2.64442 0.28946 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.81865 0.23582 2.88868 2.35662 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 0.23862 2.84929 2.43386 2.70756 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.57915 2.25909 2.64442 0.28946 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.81865 0.23582 2.88868 2.35662 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.81865 0.23582 2.88868 2.35662 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.53331 3.02441 0.20344 2.88069 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.53331 3.02441 0.20344 2.88069 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.57915 2.25909 2.64442 0.28946 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Chlorophyta_58S_end_twob_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 28 01:04:41 2012 NSEQ 2 EFFN 2.000000 CKSUM 1824079490 STATS LOCAL MSV -7.5181 0.72709 STATS LOCAL VITERBI -8.2910 0.72709 STATS LOCAL FORWARD -3.1134 0.72709 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.92688 1.15177 1.08069 1.61465 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 2.53331 3.02441 0.20344 2.88069 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.81865 0.23582 2.88868 2.35662 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.53331 3.02441 0.20344 2.88069 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.81865 0.23582 2.88868 2.35662 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.81865 0.23582 2.88868 2.35662 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.53331 3.02441 0.20344 2.88069 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 0.23862 2.84929 2.43386 2.70756 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.53331 3.02441 0.20344 2.88069 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.53331 3.02441 0.20344 2.88069 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.81865 0.23582 2.88868 2.35662 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.57915 2.25909 2.64442 0.28946 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.57915 2.25909 2.64442 0.28946 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.81865 0.23582 2.88868 2.35662 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.81865 0.23582 2.88868 2.35662 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 0.23862 2.84929 2.43386 2.70756 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.57915 2.25909 2.64442 0.28946 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.53331 3.02441 0.20344 2.88069 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.81865 0.23582 2.88868 2.35662 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.81865 0.23582 2.88868 2.35662 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.53331 3.02441 0.20344 2.88069 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.53331 3.02441 0.20344 2.88069 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.57915 2.25909 2.64442 0.28946 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Chlorophyta_58S_end_twoc_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 28 01:04:47 2012 NSEQ 15 EFFN 3.475342 CKSUM 461947662 STATS LOCAL MSV -7.2050 0.71933 STATS LOCAL VITERBI -7.8038 0.71933 STATS LOCAL FORWARD -4.0938 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.77648 1.19246 1.17175 1.52571 1.38629 1.38629 1.38629 1.38629 0.03588 4.03872 4.03872 1.46634 0.26236 0.00000 * 1 2.98048 3.63588 0.11203 3.54560 1 - - 1.38629 1.38629 1.38629 1.38629 0.03588 4.03872 4.03872 1.46634 0.26236 1.09861 0.40547 2 3.48793 0.12386 3.53504 2.86874 2 - - 1.38629 1.38629 1.38629 1.38629 0.03588 4.03872 4.03872 1.46634 0.26236 1.09861 0.40547 3 2.98048 3.63588 0.11203 3.54560 3 - - 1.38629 1.38629 1.38629 1.38629 0.03588 4.03872 4.03872 1.46634 0.26236 1.09861 0.40547 4 3.48793 0.12386 3.53504 2.86874 4 - - 1.38629 1.38629 1.38629 1.38629 0.03588 4.03872 4.03872 1.46634 0.26236 1.09861 0.40547 5 3.13697 2.62586 3.18327 0.17107 5 - - 1.38629 1.38629 1.38629 1.38629 0.03588 4.03872 4.03872 1.46634 0.26236 1.09861 0.40547 6 3.48793 0.12386 3.53504 2.86874 6 - - 1.38629 1.38629 1.38629 1.38629 0.03588 4.03872 4.03872 1.46634 0.26236 1.09861 0.40547 7 2.98048 3.63588 0.11203 3.54560 7 - - 1.38629 1.38629 1.38629 1.38629 0.03588 4.03872 4.03872 1.46634 0.26236 1.09861 0.40547 8 0.13576 3.42792 2.83279 3.33413 8 - - 1.38629 1.38629 1.38629 1.38629 0.03588 4.03872 4.03872 1.46634 0.26236 1.09861 0.40547 9 3.48793 0.12386 3.53504 2.86874 9 - - 1.38629 1.38629 1.38629 1.38629 0.03588 4.03872 4.03872 1.46634 0.26236 1.09861 0.40547 10 2.43808 1.01739 2.50945 0.75541 10 - - 1.38629 1.38629 1.38629 1.38629 0.03588 4.03872 4.03872 1.46634 0.26236 1.09861 0.40547 11 3.48793 0.12386 3.53504 2.86874 11 - - 1.38629 1.38629 1.38629 1.38629 0.03588 4.03872 4.03872 1.46634 0.26236 1.09861 0.40547 12 2.78360 0.35902 2.85076 1.70360 12 - - 1.38629 1.38629 1.38629 1.38629 0.03588 4.03872 4.03872 1.46634 0.26236 1.09861 0.40547 13 3.13697 2.62586 3.18327 0.17107 13 - - 1.38629 1.38629 1.38629 1.38629 0.03588 4.03872 4.03872 1.46634 0.26236 1.09861 0.40547 14 3.48793 0.12386 3.53504 2.86874 14 - - 1.38629 1.38629 1.38629 1.38629 0.03588 4.03872 4.03872 1.46634 0.26236 1.09861 0.40547 15 2.98048 3.63588 0.11203 3.54560 15 - - 1.38629 1.38629 1.38629 1.38629 0.03588 4.03872 4.03872 1.46634 0.26236 1.09861 0.40547 16 2.98048 3.63588 0.11203 3.54560 16 - - 1.38629 1.38629 1.38629 1.38629 0.03588 4.03872 4.03872 1.46634 0.26236 1.09861 0.40547 17 0.78647 2.54355 0.98033 2.39936 17 - - 1.38629 1.38629 1.38629 1.38629 0.03588 4.03872 4.03872 1.46634 0.26236 1.09861 0.40547 18 2.98048 3.63588 0.11203 3.54560 18 - - 1.38629 1.38629 1.38629 1.38629 0.03588 4.03872 4.03872 1.46634 0.26236 1.09861 0.40547 19 0.13576 3.42792 2.83279 3.33413 19 - - 1.38629 1.38629 1.38629 1.38629 0.03588 4.03872 4.03872 1.46634 0.26236 1.09861 0.40547 20 0.13576 3.42792 2.83279 3.33413 20 - - 1.38629 1.38629 1.38629 1.38629 0.03588 4.03872 4.03872 1.46634 0.26236 1.09861 0.40547 21 2.98048 3.63588 0.11203 3.54560 21 - - 1.38629 1.38629 1.38629 1.38629 0.03588 4.03872 4.03872 1.46634 0.26236 1.09861 0.40547 22 0.13576 3.42792 2.83279 3.33413 22 - - 1.38629 1.38629 1.38629 1.38629 0.03588 4.03872 4.03872 1.46634 0.26236 1.09861 0.40547 23 2.98048 3.63588 0.11203 3.54560 23 - - 1.38629 1.38629 1.38629 1.38629 0.03588 4.03872 4.03872 1.46634 0.26236 1.09861 0.40547 24 3.48793 0.12386 3.53504 2.86874 24 - - 1.38629 1.38629 1.38629 1.38629 0.03588 4.03872 4.03872 1.46634 0.26236 1.09861 0.40547 25 0.13576 3.42792 2.83279 3.33413 25 - - 1.38629 1.38629 1.38629 1.38629 0.03588 4.03872 4.03872 1.46634 0.26236 1.09861 0.40547 26 3.13697 2.62586 3.18327 0.17107 26 - - 1.38629 1.38629 1.38629 1.38629 0.03588 4.03872 4.03872 1.46634 0.26236 1.09861 0.40547 27 2.98048 3.63588 0.11203 3.54560 27 - - 1.38629 1.38629 1.38629 1.38629 0.03588 4.03872 4.03872 1.46634 0.26236 1.09861 0.40547 28 3.13697 2.62586 3.18327 0.17107 28 - - 1.38629 1.38629 1.38629 1.38629 0.03588 4.03872 4.03872 1.46634 0.26236 1.09861 0.40547 29 3.48793 0.12386 3.53504 2.86874 29 - - 1.38629 1.38629 1.38629 1.38629 0.03588 4.03872 4.03872 1.46634 0.26236 1.09861 0.40547 30 3.13697 2.62586 3.18327 0.17107 30 - - 1.38629 1.38629 1.38629 1.38629 0.03588 4.03872 4.03872 1.46634 0.26236 1.09861 0.40547 31 2.98048 3.63588 0.11203 3.54560 31 - - 1.38629 1.38629 1.38629 1.38629 0.03588 4.03872 4.03872 1.46634 0.26236 1.09861 0.40547 32 3.48793 0.12386 3.53504 2.86874 32 - - 1.38629 1.38629 1.38629 1.38629 0.03588 4.03872 4.03872 1.46634 0.26236 1.09861 0.40547 33 3.48793 0.12386 3.53504 2.86874 33 - - 1.38629 1.38629 1.38629 1.38629 0.03588 4.03872 4.03872 1.46634 0.26236 1.09861 0.40547 34 3.13697 2.62586 3.18327 0.17107 34 - - 1.38629 1.38629 1.38629 1.38629 0.03588 4.03872 4.03872 1.46634 0.26236 1.09861 0.40547 35 3.48793 0.12386 3.53504 2.86874 35 - - 1.38629 1.38629 1.38629 1.38629 0.03588 4.03872 4.03872 1.46634 0.26236 1.09861 0.40547 36 0.13576 3.42792 2.83279 3.33413 36 - - 1.38629 1.38629 1.38629 1.38629 0.03588 4.03872 4.03872 1.46634 0.26236 1.09861 0.40547 37 2.98048 3.63588 0.11203 3.54560 37 - - 1.38629 1.38629 1.38629 1.38629 0.03588 4.03872 4.03872 1.46634 0.26236 1.09861 0.40547 38 3.48793 0.12386 3.53504 2.86874 38 - - 1.38629 1.38629 1.38629 1.38629 0.03588 4.03872 4.03872 1.46634 0.26236 1.09861 0.40547 39 2.98048 3.63588 0.11203 3.54560 39 - - 1.38629 1.38629 1.38629 1.38629 0.03588 4.03872 4.03872 1.46634 0.26236 1.09861 0.40547 40 3.13697 2.62586 3.18327 0.17107 40 - - 1.38629 1.38629 1.38629 1.38629 0.03588 4.03872 4.03872 1.46634 0.26236 1.09861 0.40547 41 3.48793 0.12386 3.53504 2.86874 41 - - 1.38629 1.38629 1.38629 1.38629 0.03588 4.03872 4.03872 1.46634 0.26236 1.09861 0.40547 42 2.98048 3.63588 0.11203 3.54560 42 - - 1.38629 1.38629 1.38629 1.38629 0.03588 4.03872 4.03872 1.46634 0.26236 1.09861 0.40547 43 2.98048 3.63588 0.11203 3.54560 43 - - 1.38629 1.38629 1.38629 1.38629 0.03588 4.03872 4.03872 1.46634 0.26236 1.09861 0.40547 44 3.13697 2.62586 3.18327 0.17107 44 - - 1.38629 1.38629 1.38629 1.38629 0.03588 4.03872 4.03872 1.46634 0.26236 1.09861 0.40547 45 3.13697 2.62586 3.18327 0.17107 45 - - 1.38629 1.38629 1.38629 1.38629 0.01810 4.02094 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 3_End_Chlorophyta_58S_end_twod_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 28 01:04:52 2012 NSEQ 8 EFFN 3.128906 CKSUM 2498164724 STATS LOCAL MSV -7.9579 0.71933 STATS LOCAL VITERBI -7.7563 0.71933 STATS LOCAL FORWARD -3.6919 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.82357 1.15560 1.14661 1.58002 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 0.00000 * 1 2.90228 3.52232 0.12458 3.42031 1 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 2 3.35912 0.13939 3.41165 2.77481 2 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 3 2.90228 3.52232 0.12458 3.42031 3 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 4 3.35912 0.13939 3.41165 2.77481 4 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 5 3.02437 2.55419 3.07496 0.18939 5 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 6 3.35912 0.13939 3.41165 2.77481 6 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 7 2.90228 3.52232 0.12458 3.42031 7 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 8 0.15066 3.31617 2.76009 3.21184 8 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 9 2.90228 3.52232 0.12458 3.42031 9 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 10 3.35912 0.13939 3.41165 2.77481 10 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 11 3.35912 0.13939 3.41165 2.77481 11 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 12 3.35912 0.13939 3.41165 2.77481 12 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 13 3.02437 2.55419 3.07496 0.18939 13 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 14 3.35912 0.13939 3.41165 2.77481 14 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 15 2.90228 3.52232 0.12458 3.42031 15 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 16 2.90228 3.52232 0.12458 3.42031 16 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 17 2.90228 3.52232 0.12458 3.42031 17 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 18 3.35912 0.13939 3.41165 2.77481 18 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 19 0.15066 3.31617 2.76009 3.21184 19 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 20 0.15066 3.31617 2.76009 3.21184 20 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 21 2.90228 3.52232 0.12458 3.42031 21 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 22 0.15066 3.31617 2.76009 3.21184 22 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 23 2.90228 3.52232 0.12458 3.42031 23 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 24 3.35912 0.13939 3.41165 2.77481 24 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 25 0.15066 3.31617 2.76009 3.21184 25 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 26 3.02437 2.55419 3.07496 0.18939 26 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 27 2.90228 3.52232 0.12458 3.42031 27 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 28 3.02437 2.55419 3.07496 0.18939 28 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 29 3.35912 0.13939 3.41165 2.77481 29 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 30 3.02437 2.55419 3.07496 0.18939 30 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 31 2.90228 3.52232 0.12458 3.42031 31 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 32 3.35912 0.13939 3.41165 2.77481 32 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 33 3.35912 0.13939 3.41165 2.77481 33 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 34 3.02437 2.55419 3.07496 0.18939 34 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 35 3.35912 0.13939 3.41165 2.77481 35 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 36 0.15066 3.31617 2.76009 3.21184 36 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 37 2.90228 3.52232 0.12458 3.42031 37 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 38 3.35912 0.13939 3.41165 2.77481 38 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 39 2.90228 3.52232 0.12458 3.42031 39 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 40 3.02437 2.55419 3.07496 0.18939 40 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 41 3.35912 0.13939 3.41165 2.77481 41 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 42 2.90228 3.52232 0.12458 3.42031 42 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 43 2.90228 3.52232 0.12458 3.42031 43 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 44 3.02437 2.55419 3.07496 0.18939 44 - - 1.38629 1.38629 1.38629 1.38629 0.03825 3.97573 3.97573 1.46634 0.26236 1.09861 0.40547 45 3.02437 2.55419 3.07496 0.18939 45 - - 1.38629 1.38629 1.38629 1.38629 0.01931 3.95679 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Chlorophyta_58S_start_four_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 27 23:54:20 2012 NSEQ 48 EFFN 3.495117 CKSUM 2952332647 STATS LOCAL MSV -7.2226 0.71933 STATS LOCAL VITERBI -7.7596 0.71933 STATS LOCAL FORWARD -3.9921 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.54562 1.42507 1.04449 1.63755 1.38629 1.38629 1.38629 1.38629 0.03575 4.04219 4.04219 1.46634 0.26236 0.00000 * 1 0.40589 2.56427 2.39377 1.79967 1 - - 1.38629 1.38629 1.38629 1.38629 0.03575 4.04219 4.04219 1.46634 0.26236 1.09861 0.40547 2 0.13501 3.43391 2.83666 3.34071 2 - - 1.38629 1.38629 1.38629 1.38629 0.03575 4.04219 4.04219 1.46634 0.26236 1.09861 0.40547 3 0.13501 3.43391 2.83666 3.34071 3 - - 1.38629 1.38629 1.38629 1.38629 0.03575 4.04219 4.04219 1.46634 0.26236 1.09861 0.40547 4 2.98459 3.64191 0.11140 3.55227 4 - - 1.38629 1.38629 1.38629 1.38629 0.03575 4.04219 4.04219 1.46634 0.26236 1.09861 0.40547 5 3.49482 0.12308 3.54162 2.87371 5 - - 1.38629 1.38629 1.38629 1.38629 0.03575 4.04219 4.04219 1.46634 0.26236 1.09861 0.40547 6 0.13501 3.43391 2.83666 3.34071 6 - - 1.38629 1.38629 1.38629 1.38629 0.03575 4.04219 4.04219 1.46634 0.26236 1.09861 0.40547 7 3.14310 2.62975 3.18915 0.17014 7 - - 1.38629 1.38629 1.38629 1.38629 0.03575 4.04219 4.04219 1.46634 0.26236 1.09861 0.40547 8 2.98459 3.64191 0.11140 3.55227 8 - - 1.38629 1.38629 1.38629 1.38629 0.03575 4.04219 4.04219 1.46634 0.26236 1.09861 0.40547 9 3.49482 0.12308 3.54162 2.87371 9 - - 1.38629 1.38629 1.38629 1.38629 0.03575 4.04219 4.04219 1.46634 0.26236 1.09861 0.40547 10 2.98459 3.64191 0.11140 3.55227 10 - - 1.38629 1.38629 1.38629 1.38629 0.03575 4.04219 4.04219 1.46634 0.26236 1.09861 0.40547 11 3.01425 2.32087 3.06521 0.21557 11 - - 1.38629 1.38629 1.38629 1.38629 0.03575 4.04219 4.04219 1.46634 0.26236 1.09861 0.40547 12 1.55253 2.79478 0.41999 2.65775 12 - - 1.38629 1.38629 1.38629 1.38629 0.03575 4.04219 4.04219 1.46634 0.26236 1.09861 0.40547 13 2.98459 3.64191 0.11140 3.55227 13 - - 1.38629 1.38629 1.38629 1.38629 0.03575 4.04219 4.04219 1.46634 0.26236 1.09861 0.40547 14 3.14310 2.62975 3.18915 0.17014 14 - - 1.38629 1.38629 1.38629 1.38629 0.03575 4.04219 4.04219 1.46634 0.26236 1.09861 0.40547 15 2.88296 3.18424 0.14323 3.32242 15 - - 1.38629 1.38629 1.38629 1.38629 0.03575 4.04219 4.04219 1.46634 0.26236 1.09861 0.40547 16 2.98459 3.64191 0.11140 3.55227 16 - - 1.38629 1.38629 1.38629 1.38629 0.03575 4.04219 4.04219 1.46634 0.26236 1.09861 0.40547 17 0.13501 3.43391 2.83666 3.34071 17 - - 1.38629 1.38629 1.38629 1.38629 0.03575 4.04219 4.04219 1.46634 0.26236 1.09861 0.40547 18 3.49482 0.12308 3.54162 2.87371 18 - - 1.38629 1.38629 1.38629 1.38629 0.03575 4.04219 4.04219 1.46634 0.26236 1.09861 0.40547 19 2.98459 3.64191 0.11140 3.55227 19 - - 1.38629 1.38629 1.38629 1.38629 0.03575 4.04219 4.04219 1.46634 0.26236 1.09861 0.40547 20 2.98459 3.64191 0.11140 3.55227 20 - - 1.38629 1.38629 1.38629 1.38629 0.03575 4.04219 4.04219 1.46634 0.26236 1.09861 0.40547 21 3.49482 0.12308 3.54162 2.87371 21 - - 1.38629 1.38629 1.38629 1.38629 0.03575 4.04219 4.04219 1.46634 0.26236 1.09861 0.40547 22 3.14310 2.62975 3.18915 0.17014 22 - - 1.38629 1.38629 1.38629 1.38629 0.03575 4.04219 4.04219 1.46634 0.26236 1.09861 0.40547 23 3.49482 0.12308 3.54162 2.87371 23 - - 1.38629 1.38629 1.38629 1.38629 0.03575 4.04219 4.04219 1.46634 0.26236 1.09861 0.40547 24 2.98459 3.64191 0.11140 3.55227 24 - - 1.38629 1.38629 1.38629 1.38629 0.03575 4.04219 4.04219 1.46634 0.26236 1.09861 0.40547 25 2.98459 3.64191 0.11140 3.55227 25 - - 1.38629 1.38629 1.38629 1.38629 0.03575 4.04219 4.04219 1.46634 0.26236 1.09861 0.40547 26 3.14310 2.62975 3.18915 0.17014 26 - - 1.38629 1.38629 1.38629 1.38629 0.03575 4.04219 4.04219 1.46634 0.26236 1.09861 0.40547 27 3.14310 2.62975 3.18915 0.17014 27 - - 1.38629 1.38629 1.38629 1.38629 0.03575 4.04219 4.04219 1.46634 0.26236 1.09861 0.40547 28 3.49482 0.12308 3.54162 2.87371 28 - - 1.38629 1.38629 1.38629 1.38629 0.03575 4.04219 4.04219 1.46634 0.26236 1.09861 0.40547 29 3.18468 0.19693 3.24155 2.32019 29 - - 1.38629 1.38629 1.38629 1.38629 0.03575 4.04219 4.04219 1.46634 0.26236 1.09861 0.40547 30 3.36400 0.15102 3.41504 2.62150 30 - - 1.38629 1.38629 1.38629 1.38629 0.03575 4.04219 4.04219 1.46634 0.26236 1.09861 0.40547 31 2.98459 3.64191 0.11140 3.55227 31 - - 1.38629 1.38629 1.38629 1.38629 0.03575 4.04219 4.04219 1.46634 0.26236 1.09861 0.40547 32 2.61430 0.48908 2.68457 1.40511 32 - - 1.38629 1.38629 1.38629 1.38629 0.03575 4.04219 4.04219 1.46634 0.26236 1.09861 0.40547 33 2.98459 3.64191 0.11140 3.55227 33 - - 1.38629 1.38629 1.38629 1.38629 0.03575 4.04219 4.04219 1.46634 0.26236 1.09861 0.40547 34 3.14310 2.62975 3.18915 0.17014 34 - - 1.38629 1.38629 1.38629 1.38629 0.03575 4.04219 4.04219 1.46634 0.26236 1.09861 0.40547 35 3.49482 0.12308 3.54162 2.87371 35 - - 1.38629 1.38629 1.38629 1.38629 0.03575 4.04219 4.04219 1.46634 0.26236 1.09861 0.40547 36 2.98459 3.64191 0.11140 3.55227 36 - - 1.38629 1.38629 1.38629 1.38629 0.03575 4.04219 4.04219 1.46634 0.26236 1.09861 0.40547 37 0.13501 3.43391 2.83666 3.34071 37 - - 1.38629 1.38629 1.38629 1.38629 0.03575 4.04219 4.04219 1.46634 0.26236 1.09861 0.40547 38 3.14310 2.62975 3.18915 0.17014 38 - - 1.38629 1.38629 1.38629 1.38629 0.03575 4.04219 4.04219 1.46634 0.26236 1.09861 0.40547 39 2.98459 3.64191 0.11140 3.55227 39 - - 1.38629 1.38629 1.38629 1.38629 0.03575 4.04219 4.04219 1.46634 0.26236 1.09861 0.40547 40 0.13501 3.43391 2.83666 3.34071 40 - - 1.38629 1.38629 1.38629 1.38629 0.03575 4.04219 4.04219 1.46634 0.26236 1.09861 0.40547 41 0.13501 3.43391 2.83666 3.34071 41 - - 1.38629 1.38629 1.38629 1.38629 0.03575 4.04219 4.04219 1.46634 0.26236 1.09861 0.40547 42 2.98459 3.64191 0.11140 3.55227 42 - - 1.38629 1.38629 1.38629 1.38629 0.03575 4.04219 4.04219 1.46634 0.26236 1.09861 0.40547 43 2.98459 3.64191 0.11140 3.55227 43 - - 1.38629 1.38629 1.38629 1.38629 0.03575 4.04219 4.04219 1.46634 0.26236 1.09861 0.40547 44 0.13501 3.43391 2.83666 3.34071 44 - - 1.38629 1.38629 1.38629 1.38629 0.03575 4.04219 4.04219 1.46634 0.26236 1.09861 0.40547 45 3.49482 0.12308 3.54162 2.87371 45 - - 1.38629 1.38629 1.38629 1.38629 0.01803 4.02448 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Chlorophyta_58S_start_one_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 27 23:53:55 2012 NSEQ 331 EFFN 3.851128 CKSUM 2567582358 STATS LOCAL MSV -7.4488 0.71932 STATS LOCAL VITERBI -7.4861 0.71932 STATS LOCAL FORWARD -4.0022 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.16656 1.27448 1.60501 1.56974 1.38629 1.38629 1.38629 1.38629 0.03361 4.10283 4.10283 1.46634 0.26236 0.00000 * 1 3.50422 0.13202 3.54985 2.73523 1 - - 1.38629 1.38629 1.38629 1.38629 0.03361 4.10283 4.10283 1.46634 0.26236 1.09861 0.40547 2 0.12300 3.53547 2.90198 3.45220 2 - - 1.38629 1.38629 1.38629 1.38629 0.03361 4.10283 4.10283 1.46634 0.26236 1.09861 0.40547 3 0.12300 3.53547 2.90198 3.45220 3 - - 1.38629 1.38629 1.38629 1.38629 0.03361 4.10283 4.10283 1.46634 0.26236 1.09861 0.40547 4 3.61086 0.11087 3.65245 2.95674 4 - - 1.38629 1.38629 1.38629 1.38629 0.03361 4.10283 4.10283 1.46634 0.26236 1.09861 0.40547 5 3.24813 2.69634 3.29008 0.15496 5 - - 1.38629 1.38629 1.38629 1.38629 0.03361 4.10283 4.10283 1.46634 0.26236 1.09861 0.40547 6 3.61086 0.11087 3.65245 2.95674 6 - - 1.38629 1.38629 1.38629 1.38629 0.03361 4.10283 4.10283 1.46634 0.26236 1.09861 0.40547 7 3.24813 2.69634 3.29008 0.15496 7 - - 1.38629 1.38629 1.38629 1.38629 0.03361 4.10283 4.10283 1.46634 0.26236 1.09861 0.40547 8 3.61086 0.11087 3.65245 2.95674 8 - - 1.38629 1.38629 1.38629 1.38629 0.03361 4.10283 4.10283 1.46634 0.26236 1.09861 0.40547 9 0.15822 3.33237 2.81684 2.97919 9 - - 1.38629 1.38629 1.38629 1.38629 0.03361 4.10283 4.10283 1.46634 0.26236 1.09861 0.40547 10 0.12300 3.53547 2.90198 3.45220 10 - - 1.38629 1.38629 1.38629 1.38629 0.03361 4.10283 4.10283 1.46634 0.26236 1.09861 0.40547 11 3.61086 0.11087 3.65245 2.95674 11 - - 1.38629 1.38629 1.38629 1.38629 0.03361 4.10283 4.10283 1.46634 0.26236 1.09861 0.40547 12 0.12300 3.53547 2.90198 3.45220 12 - - 1.38629 1.38629 1.38629 1.38629 0.03361 4.10283 4.10283 1.46634 0.26236 1.09861 0.40547 13 0.12300 3.53547 2.90198 3.45220 13 - - 1.38629 1.38629 1.38629 1.38629 0.03361 4.10283 4.10283 1.46634 0.26236 1.09861 0.40547 14 3.50903 0.13102 3.55448 2.74453 14 - - 1.38629 1.38629 1.38629 1.38629 0.03361 4.10283 4.10283 1.46634 0.26236 1.09861 0.40547 15 3.05296 3.74278 0.10152 3.66406 15 - - 1.38629 1.38629 1.38629 1.38629 0.03361 4.10283 4.10283 1.46634 0.26236 1.09861 0.40547 16 3.05296 3.74278 0.10152 3.66406 16 - - 1.38629 1.38629 1.38629 1.38629 0.03361 4.10283 4.10283 1.46634 0.26236 1.09861 0.40547 17 0.12300 3.53547 2.90198 3.45220 17 - - 1.38629 1.38629 1.38629 1.38629 0.03361 4.10283 4.10283 1.46634 0.26236 1.09861 0.40547 18 3.24813 2.69634 3.29008 0.15496 18 - - 1.38629 1.38629 1.38629 1.38629 0.03361 4.10283 4.10283 1.46634 0.26236 1.09861 0.40547 19 0.14638 3.44359 2.66951 3.35433 19 - - 1.38629 1.38629 1.38629 1.38629 0.03361 4.10283 4.10283 1.46634 0.26236 1.09861 0.40547 20 3.24813 2.69634 3.29008 0.15496 20 - - 1.38629 1.38629 1.38629 1.38629 0.03361 4.10283 4.10283 1.46634 0.26236 1.09861 0.40547 21 3.15237 0.14262 3.44032 2.84542 21 - - 1.38629 1.38629 1.38629 1.38629 0.03361 4.10283 4.10283 1.46634 0.26236 1.09861 0.40547 22 3.24813 2.69634 3.29008 0.15496 22 - - 1.38629 1.38629 1.38629 1.38629 0.03361 4.10283 4.10283 1.46634 0.26236 1.09861 0.40547 23 2.56157 2.56948 2.98235 0.22870 23 - - 1.38629 1.38629 1.38629 1.38629 0.03361 4.10283 4.10283 1.46634 0.26236 1.09861 0.40547 24 3.05296 3.74278 0.10152 3.66406 24 - - 1.38629 1.38629 1.38629 1.38629 0.03361 4.10283 4.10283 1.46634 0.26236 1.09861 0.40547 25 3.05296 3.74278 0.10152 3.66406 25 - - 1.38629 1.38629 1.38629 1.38629 0.03361 4.10283 4.10283 1.46634 0.26236 1.09861 0.40547 26 3.61086 0.11087 3.65245 2.95674 26 - - 1.38629 1.38629 1.38629 1.38629 0.03361 4.10283 4.10283 1.46634 0.26236 1.09861 0.40547 27 3.24813 2.69634 3.29008 0.15496 27 - - 1.38629 1.38629 1.38629 1.38629 0.03361 4.10283 4.10283 1.46634 0.26236 1.09861 0.40547 28 3.61086 0.11087 3.65245 2.95674 28 - - 1.38629 1.38629 1.38629 1.38629 0.03361 4.10283 4.10283 1.46634 0.26236 1.09861 0.40547 29 2.64088 1.41397 2.70662 0.48003 29 - - 1.38629 1.38629 1.38629 1.38629 0.03361 4.10283 4.10283 1.46634 0.26236 1.09861 0.40547 30 3.46311 0.14077 3.51034 2.65795 30 - - 1.38629 1.38629 1.38629 1.38629 0.03361 4.10283 4.10283 1.46634 0.26236 1.09861 0.40547 31 2.35815 2.89431 0.22091 3.03081 31 - - 1.38629 1.38629 1.38629 1.38629 0.03361 4.10283 4.10283 1.46634 0.26236 1.09861 0.40547 32 2.19068 0.69821 1.79649 1.49252 32 - - 1.38629 1.38629 1.38629 1.38629 0.03361 4.10283 4.10283 1.46634 0.26236 1.09861 0.40547 33 0.12300 3.53547 2.90198 3.45220 33 - - 1.38629 1.38629 1.38629 1.38629 0.03361 4.10283 4.10283 1.46634 0.26236 1.09861 0.40547 34 0.55932 2.20720 2.26768 1.53784 34 - - 1.38629 1.38629 1.38629 1.38629 0.03361 4.10283 4.10283 1.46634 0.26236 1.09861 0.40547 35 3.46311 0.14077 3.51034 2.65795 35 - - 1.38629 1.38629 1.38629 1.38629 0.03361 4.10283 4.10283 1.46634 0.26236 1.09861 0.40547 36 3.05296 3.74278 0.10152 3.66406 36 - - 1.38629 1.38629 1.38629 1.38629 0.03361 4.10283 4.10283 1.46634 0.26236 1.09861 0.40547 37 0.12300 3.53547 2.90198 3.45220 37 - - 1.38629 1.38629 1.38629 1.38629 0.03361 4.10283 4.10283 1.46634 0.26236 1.09861 0.40547 38 3.24813 2.69634 3.29008 0.15496 38 - - 1.38629 1.38629 1.38629 1.38629 0.03361 4.10283 4.10283 1.46634 0.26236 1.09861 0.40547 39 3.05296 3.74278 0.10152 3.66406 39 - - 1.38629 1.38629 1.38629 1.38629 0.03361 4.10283 4.10283 1.46634 0.26236 1.09861 0.40547 40 0.12300 3.53547 2.90198 3.45220 40 - - 1.38629 1.38629 1.38629 1.38629 0.03361 4.10283 4.10283 1.46634 0.26236 1.09861 0.40547 41 0.12300 3.53547 2.90198 3.45220 41 - - 1.38629 1.38629 1.38629 1.38629 0.03361 4.10283 4.10283 1.46634 0.26236 1.09861 0.40547 42 3.05296 3.74278 0.10152 3.66406 42 - - 1.38629 1.38629 1.38629 1.38629 0.03361 4.10283 4.10283 1.46634 0.26236 1.09861 0.40547 43 0.12300 3.53547 2.90198 3.45220 43 - - 1.38629 1.38629 1.38629 1.38629 0.03361 4.10283 4.10283 1.46634 0.26236 1.09861 0.40547 44 0.12300 3.53547 2.90198 3.45220 44 - - 1.38629 1.38629 1.38629 1.38629 0.03361 4.10283 4.10283 1.46634 0.26236 1.09861 0.40547 45 3.61086 0.11087 3.65245 2.95674 45 - - 1.38629 1.38629 1.38629 1.38629 0.01695 4.08617 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Chlorophyta_58S_start_three_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 27 23:54:11 2012 NSEQ 3 EFFN 3.000000 CKSUM 1723857228 STATS LOCAL MSV -7.9701 0.72049 STATS LOCAL VITERBI -7.6631 0.72049 STATS LOCAL FORWARD -3.9650 0.72049 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.21943 1.38802 1.60191 1.37230 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 0.15719 3.27118 2.73043 3.16274 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 0.15719 3.27118 2.73043 3.16274 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 0.15719 3.27118 2.73043 3.16274 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 3.30705 0.14631 3.36166 2.73626 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 2.97980 2.52563 3.03204 0.19727 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 2.97980 2.52563 3.03204 0.19727 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 2.97980 2.52563 3.03204 0.19727 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 2.97980 2.52563 3.03204 0.19727 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 0.15719 3.27118 2.73043 3.16274 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 0.15719 3.27118 2.73043 3.16274 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 3.30705 0.14631 3.36166 2.73626 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 0.15719 3.27118 2.73043 3.16274 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 0.15719 3.27118 2.73043 3.16274 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 3.30705 0.14631 3.36166 2.73626 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 2.86982 3.47591 0.13017 3.36931 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 2.86982 3.47591 0.13017 3.36931 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 0.15719 3.27118 2.73043 3.16274 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 2.97980 2.52563 3.03204 0.19727 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 3.30705 0.14631 3.36166 2.73626 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 2.97980 2.52563 3.03204 0.19727 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 3.30705 0.14631 3.36166 2.73626 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 2.97980 2.52563 3.03204 0.19727 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 2.97980 2.52563 3.03204 0.19727 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 2.86982 3.47591 0.13017 3.36931 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 2.86982 3.47591 0.13017 3.36931 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 3.30705 0.14631 3.36166 2.73626 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 2.97980 2.52563 3.03204 0.19727 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 3.30705 0.14631 3.36166 2.73626 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 2.97980 2.52563 3.03204 0.19727 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 3.30705 0.14631 3.36166 2.73626 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 2.86982 3.47591 0.13017 3.36931 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 3.30705 0.14631 3.36166 2.73626 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 0.15719 3.27118 2.73043 3.16274 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 2.97980 2.52563 3.03204 0.19727 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 3.30705 0.14631 3.36166 2.73626 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 2.86982 3.47591 0.13017 3.36931 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 0.15719 3.27118 2.73043 3.16274 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 2.97980 2.52563 3.03204 0.19727 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 2.86982 3.47591 0.13017 3.36931 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 0.15719 3.27118 2.73043 3.16274 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 0.15719 3.27118 2.73043 3.16274 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 2.86982 3.47591 0.13017 3.36931 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 0.15719 3.27118 2.73043 3.16274 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 0.15719 3.27118 2.73043 3.16274 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 3.30705 0.14631 3.36166 2.73626 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 2_5.8_Chlorophyta_58S_start_two_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Fri Jan 27 23:54:03 2012 NSEQ 2 EFFN 2.000000 CKSUM 1810826480 STATS LOCAL MSV -7.3071 0.72810 STATS LOCAL VITERBI -8.2380 0.72810 STATS LOCAL FORWARD -3.8550 0.72810 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.23917 1.28915 1.56888 1.48462 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 0.23862 2.84929 2.43386 2.70756 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.81865 0.23582 2.88868 2.35662 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 0.23862 2.84929 2.43386 2.70756 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 0.23862 2.84929 2.43386 2.70756 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.81865 0.23582 2.88868 2.35662 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.57915 2.25909 2.64442 0.28946 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.53331 3.02441 0.20344 2.88069 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.57915 2.25909 2.64442 0.28946 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 0.23862 2.84929 2.43386 2.70756 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 2.81865 0.23582 2.88868 2.35662 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.23862 2.84929 2.43386 2.70756 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23862 2.84929 2.43386 2.70756 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.53331 3.02441 0.20344 2.88069 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.53331 3.02441 0.20344 2.88069 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 0.23862 2.84929 2.43386 2.70756 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.57915 2.25909 2.64442 0.28946 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.57915 2.25909 2.64442 0.28946 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.57915 2.25909 2.64442 0.28946 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.81865 0.23582 2.88868 2.35662 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.57915 2.25909 2.64442 0.28946 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.81865 0.23582 2.88868 2.35662 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.53331 3.02441 0.20344 2.88069 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.53331 3.02441 0.20344 2.88069 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 2.81865 0.23582 2.88868 2.35662 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.57915 2.25909 2.64442 0.28946 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.81865 0.23582 2.88868 2.35662 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 0.23862 2.84929 2.43386 2.70756 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 0.23862 2.84929 2.43386 2.70756 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.57915 2.25909 2.64442 0.28946 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 2.81865 0.23582 2.88868 2.35662 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.53331 3.02441 0.20344 2.88069 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 0.23862 2.84929 2.43386 2.70756 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 2.53331 3.02441 0.20344 2.88069 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 0.23862 2.84929 2.43386 2.70756 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.53331 3.02441 0.20344 2.88069 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 0.23862 2.84929 2.43386 2.70756 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.81865 0.23582 2.88868 2.35662 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Chlorophyta_4_LSU_start_four_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 28 01:33:17 2012 NSEQ 32 EFFN 3.527344 CKSUM 2012743755 STATS LOCAL MSV -7.4497 0.71931 STATS LOCAL VITERBI -7.6973 0.71931 STATS LOCAL FORWARD -4.3994 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.35480 1.36244 1.23357 1.63622 1.38629 1.38629 1.38629 1.38629 0.03554 4.04784 4.04784 1.46634 0.26236 0.00000 * 1 0.93968 1.86458 1.85543 1.21099 1 - - 1.38629 1.38629 1.38629 1.38629 0.03554 4.04784 4.04784 1.46634 0.26236 1.09861 0.40547 2 1.23504 1.09122 1.83280 1.54455 2 - - 1.38629 1.38629 1.38629 1.38629 0.03554 4.04784 4.04784 1.46634 0.26236 1.09861 0.40547 3 2.99121 3.65163 0.11040 3.56302 3 - - 1.38629 1.38629 1.38629 1.38629 0.03554 4.04784 4.04784 1.46634 0.26236 1.09861 0.40547 4 3.50594 0.12185 3.55225 2.88172 4 - - 1.38629 1.38629 1.38629 1.38629 0.03554 4.04784 4.04784 1.46634 0.26236 1.09861 0.40547 5 2.91322 2.09109 2.96826 0.26039 5 - - 1.38629 1.38629 1.38629 1.38629 0.03554 4.04784 4.04784 1.46634 0.26236 1.09861 0.40547 6 2.99121 3.65163 0.11040 3.56302 6 - - 1.38629 1.38629 1.38629 1.38629 0.03554 4.04784 4.04784 1.46634 0.26236 1.09861 0.40547 7 3.50594 0.12185 3.55225 2.88172 7 - - 1.38629 1.38629 1.38629 1.38629 0.03554 4.04784 4.04784 1.46634 0.26236 1.09861 0.40547 8 2.99121 3.65163 0.11040 3.56302 8 - - 1.38629 1.38629 1.38629 1.38629 0.03554 4.04784 4.04784 1.46634 0.26236 1.09861 0.40547 9 0.13381 3.44360 2.84291 3.35134 9 - - 1.38629 1.38629 1.38629 1.38629 0.03554 4.04784 4.04784 1.46634 0.26236 1.09861 0.40547 10 3.15301 2.63604 3.19868 0.16864 10 - - 1.38629 1.38629 1.38629 1.38629 0.03554 4.04784 4.04784 1.46634 0.26236 1.09861 0.40547 11 2.99121 3.65163 0.11040 3.56302 11 - - 1.38629 1.38629 1.38629 1.38629 0.03554 4.04784 4.04784 1.46634 0.26236 1.09861 0.40547 12 3.15301 2.63604 3.19868 0.16864 12 - - 1.38629 1.38629 1.38629 1.38629 0.03554 4.04784 4.04784 1.46634 0.26236 1.09861 0.40547 13 3.50594 0.12185 3.55225 2.88172 13 - - 1.38629 1.38629 1.38629 1.38629 0.03554 4.04784 4.04784 1.46634 0.26236 1.09861 0.40547 14 2.99121 3.65163 0.11040 3.56302 14 - - 1.38629 1.38629 1.38629 1.38629 0.03554 4.04784 4.04784 1.46634 0.26236 1.09861 0.40547 15 3.15301 2.63604 3.19868 0.16864 15 - - 1.38629 1.38629 1.38629 1.38629 0.03554 4.04784 4.04784 1.46634 0.26236 1.09861 0.40547 16 3.50594 0.12185 3.55225 2.88172 16 - - 1.38629 1.38629 1.38629 1.38629 0.03554 4.04784 4.04784 1.46634 0.26236 1.09861 0.40547 17 2.99121 3.65163 0.11040 3.56302 17 - - 1.38629 1.38629 1.38629 1.38629 0.03554 4.04784 4.04784 1.46634 0.26236 1.09861 0.40547 18 2.99121 3.65163 0.11040 3.56302 18 - - 1.38629 1.38629 1.38629 1.38629 0.03554 4.04784 4.04784 1.46634 0.26236 1.09861 0.40547 19 3.50594 0.12185 3.55225 2.88172 19 - - 1.38629 1.38629 1.38629 1.38629 0.03554 4.04784 4.04784 1.46634 0.26236 1.09861 0.40547 20 2.99121 3.65163 0.11040 3.56302 20 - - 1.38629 1.38629 1.38629 1.38629 0.03554 4.04784 4.04784 1.46634 0.26236 1.09861 0.40547 21 0.13381 3.44360 2.84291 3.35134 21 - - 1.38629 1.38629 1.38629 1.38629 0.03554 4.04784 4.04784 1.46634 0.26236 1.09861 0.40547 22 2.99121 3.65163 0.11040 3.56302 22 - - 1.38629 1.38629 1.38629 1.38629 0.03554 4.04784 4.04784 1.46634 0.26236 1.09861 0.40547 23 2.99121 3.65163 0.11040 3.56302 23 - - 1.38629 1.38629 1.38629 1.38629 0.03554 4.04784 4.04784 1.46634 0.26236 1.09861 0.40547 24 0.13381 3.44360 2.84291 3.35134 24 - - 1.38629 1.38629 1.38629 1.38629 0.03554 4.04784 4.04784 1.46634 0.26236 1.09861 0.40547 25 0.13381 3.44360 2.84291 3.35134 25 - - 1.38629 1.38629 1.38629 1.38629 0.03554 4.04784 4.04784 1.46634 0.26236 1.09861 0.40547 26 0.13381 3.44360 2.84291 3.35134 26 - - 1.38629 1.38629 1.38629 1.38629 0.03554 4.04784 4.04784 1.46634 0.26236 1.09861 0.40547 27 3.50594 0.12185 3.55225 2.88172 27 - - 1.38629 1.38629 1.38629 1.38629 0.03554 4.04784 4.04784 1.46634 0.26236 1.09861 0.40547 28 3.50594 0.12185 3.55225 2.88172 28 - - 1.38629 1.38629 1.38629 1.38629 0.03554 4.04784 4.04784 1.46634 0.26236 1.09861 0.40547 29 3.50594 0.12185 3.55225 2.88172 29 - - 1.38629 1.38629 1.38629 1.38629 0.03554 4.04784 4.04784 1.46634 0.26236 1.09861 0.40547 30 2.99121 3.65163 0.11040 3.56302 30 - - 1.38629 1.38629 1.38629 1.38629 0.03554 4.04784 4.04784 1.46634 0.26236 1.09861 0.40547 31 3.50594 0.12185 3.55225 2.88172 31 - - 1.38629 1.38629 1.38629 1.38629 0.03554 4.04784 4.04784 1.46634 0.26236 1.09861 0.40547 32 3.15301 2.63604 3.19868 0.16864 32 - - 1.38629 1.38629 1.38629 1.38629 0.03554 4.04784 4.04784 1.46634 0.26236 1.09861 0.40547 33 2.99121 3.65163 0.11040 3.56302 33 - - 1.38629 1.38629 1.38629 1.38629 0.03554 4.04784 4.04784 1.46634 0.26236 1.09861 0.40547 34 0.13381 3.44360 2.84291 3.35134 34 - - 1.38629 1.38629 1.38629 1.38629 0.03554 4.04784 4.04784 1.46634 0.26236 1.09861 0.40547 35 0.13381 3.44360 2.84291 3.35134 35 - - 1.38629 1.38629 1.38629 1.38629 0.03554 4.04784 4.04784 1.46634 0.26236 1.09861 0.40547 36 3.50594 0.12185 3.55225 2.88172 36 - - 1.38629 1.38629 1.38629 1.38629 0.03554 4.04784 4.04784 1.46634 0.26236 1.09861 0.40547 37 3.15301 2.63604 3.19868 0.16864 37 - - 1.38629 1.38629 1.38629 1.38629 0.03554 4.04784 4.04784 1.46634 0.26236 1.09861 0.40547 38 3.15301 2.63604 3.19868 0.16864 38 - - 1.38629 1.38629 1.38629 1.38629 0.03554 4.04784 4.04784 1.46634 0.26236 1.09861 0.40547 39 0.13381 3.44360 2.84291 3.35134 39 - - 1.38629 1.38629 1.38629 1.38629 0.03554 4.04784 4.04784 1.46634 0.26236 1.09861 0.40547 40 0.13381 3.44360 2.84291 3.35134 40 - - 1.38629 1.38629 1.38629 1.38629 0.03554 4.04784 4.04784 1.46634 0.26236 1.09861 0.40547 41 2.99121 3.65163 0.11040 3.56302 41 - - 1.38629 1.38629 1.38629 1.38629 0.03554 4.04784 4.04784 1.46634 0.26236 1.09861 0.40547 42 3.50594 0.12185 3.55225 2.88172 42 - - 1.38629 1.38629 1.38629 1.38629 0.03554 4.04784 4.04784 1.46634 0.26236 1.09861 0.40547 43 0.13381 3.44360 2.84291 3.35134 43 - - 1.38629 1.38629 1.38629 1.38629 0.03554 4.04784 4.04784 1.46634 0.26236 1.09861 0.40547 44 3.15301 2.63604 3.19868 0.16864 44 - - 1.38629 1.38629 1.38629 1.38629 0.03554 4.04784 4.04784 1.46634 0.26236 1.09861 0.40547 45 0.13381 3.44360 2.84291 3.35134 45 - - 1.38629 1.38629 1.38629 1.38629 0.01793 4.03022 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Chlorophyta_4_LSU_start_onea_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 28 01:32:03 2012 NSEQ 11 EFFN 3.601318 CKSUM 379381944 STATS LOCAL MSV -7.4834 0.71933 STATS LOCAL VITERBI -7.5869 0.71933 STATS LOCAL FORWARD -3.9658 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.30893 1.27801 1.46843 1.50954 1.38629 1.38629 1.38629 1.38629 0.03508 4.06067 4.06067 1.46634 0.26236 0.00000 * 1 1.44401 2.22516 2.33571 0.58119 1 - - 1.38629 1.38629 1.38629 1.38629 0.03508 4.06067 4.06067 1.46634 0.26236 1.09861 0.40547 2 3.17545 2.65027 3.22025 0.16529 2 - - 1.38629 1.38629 1.38629 1.38629 0.03508 4.06067 4.06067 1.46634 0.26236 1.09861 0.40547 3 3.17545 2.65027 3.22025 0.16529 3 - - 1.38629 1.38629 1.38629 1.38629 0.03508 4.06067 4.06067 1.46634 0.26236 1.09861 0.40547 4 3.53099 0.11912 3.57619 2.89972 4 - - 1.38629 1.38629 1.38629 1.38629 0.03508 4.06067 4.06067 1.46634 0.26236 1.09861 0.40547 5 3.00607 3.67347 0.10820 3.58721 5 - - 1.38629 1.38629 1.38629 1.38629 0.03508 4.06067 4.06067 1.46634 0.26236 1.09861 0.40547 6 0.13114 3.46546 2.85699 3.37531 6 - - 1.38629 1.38629 1.38629 1.38629 0.03508 4.06067 4.06067 1.46634 0.26236 1.09861 0.40547 7 3.53099 0.11912 3.57619 2.89972 7 - - 1.38629 1.38629 1.38629 1.38629 0.03508 4.06067 4.06067 1.46634 0.26236 1.09861 0.40547 8 3.53099 0.11912 3.57619 2.89972 8 - - 1.38629 1.38629 1.38629 1.38629 0.03508 4.06067 4.06067 1.46634 0.26236 1.09861 0.40547 9 3.17545 2.65027 3.22025 0.16529 9 - - 1.38629 1.38629 1.38629 1.38629 0.03508 4.06067 4.06067 1.46634 0.26236 1.09861 0.40547 10 3.00607 3.67347 0.10820 3.58721 10 - - 1.38629 1.38629 1.38629 1.38629 0.03508 4.06067 4.06067 1.46634 0.26236 1.09861 0.40547 11 0.13114 3.46546 2.85699 3.37531 11 - - 1.38629 1.38629 1.38629 1.38629 0.03508 4.06067 4.06067 1.46634 0.26236 1.09861 0.40547 12 3.00607 3.67347 0.10820 3.58721 12 - - 1.38629 1.38629 1.38629 1.38629 0.03508 4.06067 4.06067 1.46634 0.26236 1.09861 0.40547 13 3.53099 0.11912 3.57619 2.89972 13 - - 1.38629 1.38629 1.38629 1.38629 0.03508 4.06067 4.06067 1.46634 0.26236 1.09861 0.40547 14 3.17545 2.65027 3.22025 0.16529 14 - - 1.38629 1.38629 1.38629 1.38629 0.03508 4.06067 4.06067 1.46634 0.26236 1.09861 0.40547 15 3.53099 0.11912 3.57619 2.89972 15 - - 1.38629 1.38629 1.38629 1.38629 0.03508 4.06067 4.06067 1.46634 0.26236 1.09861 0.40547 16 0.13114 3.46546 2.85699 3.37531 16 - - 1.38629 1.38629 1.38629 1.38629 0.03508 4.06067 4.06067 1.46634 0.26236 1.09861 0.40547 17 3.00607 3.67347 0.10820 3.58721 17 - - 1.38629 1.38629 1.38629 1.38629 0.03508 4.06067 4.06067 1.46634 0.26236 1.09861 0.40547 18 3.00607 3.67347 0.10820 3.58721 18 - - 1.38629 1.38629 1.38629 1.38629 0.03508 4.06067 4.06067 1.46634 0.26236 1.09861 0.40547 19 3.53099 0.11912 3.57619 2.89972 19 - - 1.38629 1.38629 1.38629 1.38629 0.03508 4.06067 4.06067 1.46634 0.26236 1.09861 0.40547 20 0.13114 3.46546 2.85699 3.37531 20 - - 1.38629 1.38629 1.38629 1.38629 0.03508 4.06067 4.06067 1.46634 0.26236 1.09861 0.40547 21 0.13114 3.46546 2.85699 3.37531 21 - - 1.38629 1.38629 1.38629 1.38629 0.03508 4.06067 4.06067 1.46634 0.26236 1.09861 0.40547 22 3.00607 3.67347 0.10820 3.58721 22 - - 1.38629 1.38629 1.38629 1.38629 0.03508 4.06067 4.06067 1.46634 0.26236 1.09861 0.40547 23 1.55854 2.81955 0.41310 2.68348 23 - - 1.38629 1.38629 1.38629 1.38629 0.03508 4.06067 4.06067 1.46634 0.26236 1.09861 0.40547 24 2.52166 0.63298 2.59319 1.15872 24 - - 1.38629 1.38629 1.38629 1.38629 0.03508 4.06067 4.06067 1.46634 0.26236 1.09861 0.40547 25 2.93139 2.09214 2.98594 0.25778 25 - - 1.38629 1.38629 1.38629 1.38629 0.03508 4.06067 4.06067 1.46634 0.26236 1.09861 0.40547 26 0.13114 3.46546 2.85699 3.37531 26 - - 1.38629 1.38629 1.38629 1.38629 0.03508 4.06067 4.06067 1.46634 0.26236 1.09861 0.40547 27 3.53099 0.11912 3.57619 2.89972 27 - - 1.38629 1.38629 1.38629 1.38629 0.03508 4.06067 4.06067 1.46634 0.26236 1.09861 0.40547 28 3.53099 0.11912 3.57619 2.89972 28 - - 1.38629 1.38629 1.38629 1.38629 0.03508 4.06067 4.06067 1.46634 0.26236 1.09861 0.40547 29 3.53099 0.11912 3.57619 2.89972 29 - - 1.38629 1.38629 1.38629 1.38629 0.03508 4.06067 4.06067 1.46634 0.26236 1.09861 0.40547 30 3.00607 3.67347 0.10820 3.58721 30 - - 1.38629 1.38629 1.38629 1.38629 0.03508 4.06067 4.06067 1.46634 0.26236 1.09861 0.40547 31 3.53099 0.11912 3.57619 2.89972 31 - - 1.38629 1.38629 1.38629 1.38629 0.03508 4.06067 4.06067 1.46634 0.26236 1.09861 0.40547 32 3.17545 2.65027 3.22025 0.16529 32 - - 1.38629 1.38629 1.38629 1.38629 0.03508 4.06067 4.06067 1.46634 0.26236 1.09861 0.40547 33 3.00607 3.67347 0.10820 3.58721 33 - - 1.38629 1.38629 1.38629 1.38629 0.03508 4.06067 4.06067 1.46634 0.26236 1.09861 0.40547 34 0.13114 3.46546 2.85699 3.37531 34 - - 1.38629 1.38629 1.38629 1.38629 0.03508 4.06067 4.06067 1.46634 0.26236 1.09861 0.40547 35 0.13114 3.46546 2.85699 3.37531 35 - - 1.38629 1.38629 1.38629 1.38629 0.03508 4.06067 4.06067 1.46634 0.26236 1.09861 0.40547 36 3.53099 0.11912 3.57619 2.89972 36 - - 1.38629 1.38629 1.38629 1.38629 0.03508 4.06067 4.06067 1.46634 0.26236 1.09861 0.40547 37 3.17545 2.65027 3.22025 0.16529 37 - - 1.38629 1.38629 1.38629 1.38629 0.03508 4.06067 4.06067 1.46634 0.26236 1.09861 0.40547 38 3.17545 2.65027 3.22025 0.16529 38 - - 1.38629 1.38629 1.38629 1.38629 0.03508 4.06067 4.06067 1.46634 0.26236 1.09861 0.40547 39 0.13114 3.46546 2.85699 3.37531 39 - - 1.38629 1.38629 1.38629 1.38629 0.03508 4.06067 4.06067 1.46634 0.26236 1.09861 0.40547 40 0.13114 3.46546 2.85699 3.37531 40 - - 1.38629 1.38629 1.38629 1.38629 0.03508 4.06067 4.06067 1.46634 0.26236 1.09861 0.40547 41 3.00607 3.67347 0.10820 3.58721 41 - - 1.38629 1.38629 1.38629 1.38629 0.03508 4.06067 4.06067 1.46634 0.26236 1.09861 0.40547 42 3.53099 0.11912 3.57619 2.89972 42 - - 1.38629 1.38629 1.38629 1.38629 0.03508 4.06067 4.06067 1.46634 0.26236 1.09861 0.40547 43 0.13114 3.46546 2.85699 3.37531 43 - - 1.38629 1.38629 1.38629 1.38629 0.03508 4.06067 4.06067 1.46634 0.26236 1.09861 0.40547 44 3.17545 2.65027 3.22025 0.16529 44 - - 1.38629 1.38629 1.38629 1.38629 0.03508 4.06067 4.06067 1.46634 0.26236 1.09861 0.40547 45 0.13114 3.46546 2.85699 3.37531 45 - - 1.38629 1.38629 1.38629 1.38629 0.01770 4.04328 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Chlorophyta_4_LSU_start_oneb_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 28 01:32:09 2012 NSEQ 3 EFFN 3.000000 CKSUM 3141584239 STATS LOCAL MSV -7.9640 0.72014 STATS LOCAL VITERBI -7.7831 0.72014 STATS LOCAL FORWARD -3.8589 0.72014 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.22757 1.15795 1.60695 1.64834 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 2.97980 2.52563 3.03204 0.19727 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 3.30705 0.14631 3.36166 2.73626 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 2.97980 2.52563 3.03204 0.19727 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 3.30705 0.14631 3.36166 2.73626 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 2.86982 3.47591 0.13017 3.36931 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 0.15719 3.27118 2.73043 3.16274 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 3.30705 0.14631 3.36166 2.73626 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 3.30705 0.14631 3.36166 2.73626 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 2.97980 2.52563 3.03204 0.19727 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 2.86982 3.47591 0.13017 3.36931 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 0.15719 3.27118 2.73043 3.16274 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 2.86982 3.47591 0.13017 3.36931 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 3.30705 0.14631 3.36166 2.73626 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 2.97980 2.52563 3.03204 0.19727 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 3.30705 0.14631 3.36166 2.73626 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 0.15719 3.27118 2.73043 3.16274 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 0.15719 3.27118 2.73043 3.16274 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 2.86982 3.47591 0.13017 3.36931 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 3.30705 0.14631 3.36166 2.73626 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 0.15719 3.27118 2.73043 3.16274 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 0.15719 3.27118 2.73043 3.16274 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 2.86982 3.47591 0.13017 3.36931 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 0.15719 3.27118 2.73043 3.16274 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 3.30705 0.14631 3.36166 2.73626 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 3.30705 0.14631 3.36166 2.73626 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 0.15719 3.27118 2.73043 3.16274 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 3.30705 0.14631 3.36166 2.73626 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 3.30705 0.14631 3.36166 2.73626 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 3.30705 0.14631 3.36166 2.73626 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 2.86982 3.47591 0.13017 3.36931 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 3.30705 0.14631 3.36166 2.73626 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 2.97980 2.52563 3.03204 0.19727 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 2.86982 3.47591 0.13017 3.36931 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 0.15719 3.27118 2.73043 3.16274 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 0.15719 3.27118 2.73043 3.16274 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 3.30705 0.14631 3.36166 2.73626 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 2.97980 2.52563 3.03204 0.19727 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 2.97980 2.52563 3.03204 0.19727 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 0.15719 3.27118 2.73043 3.16274 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 0.15719 3.27118 2.73043 3.16274 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 2.86982 3.47591 0.13017 3.36931 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 3.30705 0.14631 3.36166 2.73626 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 0.15719 3.27118 2.73043 3.16274 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 2.97980 2.52563 3.03204 0.19727 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 0.15719 3.27118 2.73043 3.16274 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Chlorophyta_4_LSU_start_onec_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 28 01:32:18 2012 NSEQ 6 EFFN 3.307617 CKSUM 3682386209 STATS LOCAL MSV -8.0356 0.71933 STATS LOCAL VITERBI -7.8157 0.71933 STATS LOCAL FORWARD -4.1473 0.71933 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.27479 1.35672 1.37691 1.55755 1.38629 1.38629 1.38629 1.38629 0.03699 4.00872 4.00872 1.46634 0.26236 0.00000 * 1 3.08373 2.59204 3.13207 0.17946 1 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00872 4.00872 1.46634 0.26236 1.09861 0.40547 2 3.08373 2.59204 3.13207 0.17946 2 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00872 4.00872 1.46634 0.26236 1.09861 0.40547 3 3.08373 2.59204 3.13207 0.17946 3 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00872 4.00872 1.46634 0.26236 1.09861 0.40547 4 3.42754 0.13087 3.47723 2.82494 4 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00872 4.00872 1.46634 0.26236 1.09861 0.40547 5 2.94415 3.58285 0.11770 3.48701 5 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00872 4.00872 1.46634 0.26236 1.09861 0.40547 6 0.14253 3.37543 2.79878 3.27663 6 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00872 4.00872 1.46634 0.26236 1.09861 0.40547 7 3.42754 0.13087 3.47723 2.82494 7 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00872 4.00872 1.46634 0.26236 1.09861 0.40547 8 3.42754 0.13087 3.47723 2.82494 8 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00872 4.00872 1.46634 0.26236 1.09861 0.40547 9 3.08373 2.59204 3.13207 0.17946 9 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00872 4.00872 1.46634 0.26236 1.09861 0.40547 10 2.94415 3.58285 0.11770 3.48701 10 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00872 4.00872 1.46634 0.26236 1.09861 0.40547 11 0.14253 3.37543 2.79878 3.27663 11 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00872 4.00872 1.46634 0.26236 1.09861 0.40547 12 2.94415 3.58285 0.11770 3.48701 12 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00872 4.00872 1.46634 0.26236 1.09861 0.40547 13 3.42754 0.13087 3.47723 2.82494 13 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00872 4.00872 1.46634 0.26236 1.09861 0.40547 14 3.08373 2.59204 3.13207 0.17946 14 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00872 4.00872 1.46634 0.26236 1.09861 0.40547 15 3.42754 0.13087 3.47723 2.82494 15 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00872 4.00872 1.46634 0.26236 1.09861 0.40547 16 0.14253 3.37543 2.79878 3.27663 16 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00872 4.00872 1.46634 0.26236 1.09861 0.40547 17 2.94415 3.58285 0.11770 3.48701 17 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00872 4.00872 1.46634 0.26236 1.09861 0.40547 18 2.94415 3.58285 0.11770 3.48701 18 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00872 4.00872 1.46634 0.26236 1.09861 0.40547 19 2.94415 3.58285 0.11770 3.48701 19 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00872 4.00872 1.46634 0.26236 1.09861 0.40547 20 2.94415 3.58285 0.11770 3.48701 20 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00872 4.00872 1.46634 0.26236 1.09861 0.40547 21 0.14253 3.37543 2.79878 3.27663 21 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00872 4.00872 1.46634 0.26236 1.09861 0.40547 22 2.94415 3.58285 0.11770 3.48701 22 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00872 4.00872 1.46634 0.26236 1.09861 0.40547 23 0.14253 3.37543 2.79878 3.27663 23 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00872 4.00872 1.46634 0.26236 1.09861 0.40547 24 0.14253 3.37543 2.79878 3.27663 24 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00872 4.00872 1.46634 0.26236 1.09861 0.40547 25 3.42754 0.13087 3.47723 2.82494 25 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00872 4.00872 1.46634 0.26236 1.09861 0.40547 26 0.14253 3.37543 2.79878 3.27663 26 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00872 4.00872 1.46634 0.26236 1.09861 0.40547 27 3.42754 0.13087 3.47723 2.82494 27 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00872 4.00872 1.46634 0.26236 1.09861 0.40547 28 3.42754 0.13087 3.47723 2.82494 28 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00872 4.00872 1.46634 0.26236 1.09861 0.40547 29 3.42754 0.13087 3.47723 2.82494 29 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00872 4.00872 1.46634 0.26236 1.09861 0.40547 30 2.94415 3.58285 0.11770 3.48701 30 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00872 4.00872 1.46634 0.26236 1.09861 0.40547 31 2.49371 0.60220 2.56569 1.22784 31 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00872 4.00872 1.46634 0.26236 1.09861 0.40547 32 3.08373 2.59204 3.13207 0.17946 32 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00872 4.00872 1.46634 0.26236 1.09861 0.40547 33 2.94415 3.58285 0.11770 3.48701 33 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00872 4.00872 1.46634 0.26236 1.09861 0.40547 34 0.14253 3.37543 2.79878 3.27663 34 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00872 4.00872 1.46634 0.26236 1.09861 0.40547 35 0.14253 3.37543 2.79878 3.27663 35 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00872 4.00872 1.46634 0.26236 1.09861 0.40547 36 3.42754 0.13087 3.47723 2.82494 36 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00872 4.00872 1.46634 0.26236 1.09861 0.40547 37 3.08373 2.59204 3.13207 0.17946 37 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00872 4.00872 1.46634 0.26236 1.09861 0.40547 38 3.08373 2.59204 3.13207 0.17946 38 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00872 4.00872 1.46634 0.26236 1.09861 0.40547 39 0.14253 3.37543 2.79878 3.27663 39 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00872 4.00872 1.46634 0.26236 1.09861 0.40547 40 0.14253 3.37543 2.79878 3.27663 40 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00872 4.00872 1.46634 0.26236 1.09861 0.40547 41 2.94415 3.58285 0.11770 3.48701 41 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00872 4.00872 1.46634 0.26236 1.09861 0.40547 42 3.42754 0.13087 3.47723 2.82494 42 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00872 4.00872 1.46634 0.26236 1.09861 0.40547 43 0.14253 3.37543 2.79878 3.27663 43 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00872 4.00872 1.46634 0.26236 1.09861 0.40547 44 3.08373 2.59204 3.13207 0.17946 44 - - 1.38629 1.38629 1.38629 1.38629 0.03699 4.00872 4.00872 1.46634 0.26236 1.09861 0.40547 45 0.14253 3.37543 2.79878 3.27663 45 - - 1.38629 1.38629 1.38629 1.38629 0.01867 3.99039 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Chlorophyta_4_LSU_start_oned_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 28 01:32:27 2012 NSEQ 3 EFFN 3.000000 CKSUM 3310277996 STATS LOCAL MSV -8.0340 0.72071 STATS LOCAL VITERBI -7.7803 0.72071 STATS LOCAL FORWARD -3.9164 0.72071 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.21928 1.29810 1.50316 1.56504 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 0.00000 * 1 2.97980 2.52563 3.03204 0.19727 1 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 2 2.97980 2.52563 3.03204 0.19727 2 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 3 2.97980 2.52563 3.03204 0.19727 3 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 4 3.30705 0.14631 3.36166 2.73626 4 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 5 2.86982 3.47591 0.13017 3.36931 5 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 6 0.15719 3.27118 2.73043 3.16274 6 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 7 3.30705 0.14631 3.36166 2.73626 7 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 8 3.30705 0.14631 3.36166 2.73626 8 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 9 2.97980 2.52563 3.03204 0.19727 9 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 10 2.86982 3.47591 0.13017 3.36931 10 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 11 0.15719 3.27118 2.73043 3.16274 11 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 12 2.86982 3.47591 0.13017 3.36931 12 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 13 2.10839 0.71588 1.38236 1.97456 13 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 14 2.97980 2.52563 3.03204 0.19727 14 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 15 3.30705 0.14631 3.36166 2.73626 15 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 16 0.15719 3.27118 2.73043 3.16274 16 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 17 2.86982 3.47591 0.13017 3.36931 17 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 18 2.86982 3.47591 0.13017 3.36931 18 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 19 3.30705 0.14631 3.36166 2.73626 19 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 20 0.15719 3.27118 2.73043 3.16274 20 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 21 0.15719 3.27118 2.73043 3.16274 21 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 22 2.86982 3.47591 0.13017 3.36931 22 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 23 0.15719 3.27118 2.73043 3.16274 23 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 24 0.15719 3.27118 2.73043 3.16274 24 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 25 3.30705 0.14631 3.36166 2.73626 25 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 26 0.15719 3.27118 2.73043 3.16274 26 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 27 3.30705 0.14631 3.36166 2.73626 27 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 28 3.30705 0.14631 3.36166 2.73626 28 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 29 3.30705 0.14631 3.36166 2.73626 29 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 30 2.86982 3.47591 0.13017 3.36931 30 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 31 3.30705 0.14631 3.36166 2.73626 31 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 32 2.97980 2.52563 3.03204 0.19727 32 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 33 2.86982 3.47591 0.13017 3.36931 33 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 34 0.15719 3.27118 2.73043 3.16274 34 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 35 0.15719 3.27118 2.73043 3.16274 35 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 36 3.30705 0.14631 3.36166 2.73626 36 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 37 2.97980 2.52563 3.03204 0.19727 37 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 38 2.97980 2.52563 3.03204 0.19727 38 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 39 0.15719 3.27118 2.73043 3.16274 39 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 40 0.15719 3.27118 2.73043 3.16274 40 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 41 2.86982 3.47591 0.13017 3.36931 41 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 42 3.30705 0.14631 3.36166 2.73626 42 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 43 0.15719 3.27118 2.73043 3.16274 43 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 44 2.97980 2.52563 3.03204 0.19727 44 - - 1.38629 1.38629 1.38629 1.38629 0.03922 3.95124 3.95124 1.46634 0.26236 1.09861 0.40547 45 0.15719 3.27118 2.73043 3.16274 45 - - 1.38629 1.38629 1.38629 1.38629 0.01980 3.93183 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Chlorophyta_4_LSU_start_three_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 28 01:33:03 2012 NSEQ 11 EFFN 3.397217 CKSUM 3928018479 STATS LOCAL MSV -7.3779 0.71931 STATS LOCAL VITERBI -7.7033 0.71931 STATS LOCAL FORWARD -4.2315 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.32042 1.51402 1.30568 1.41895 1.38629 1.38629 1.38629 1.38629 0.03639 4.02485 4.02485 1.46634 0.26236 0.00000 * 1 1.38134 1.08048 2.05996 1.26632 1 - - 1.38629 1.38629 1.38629 1.38629 0.03639 4.02485 4.02485 1.46634 0.26236 1.09861 0.40547 2 3.11246 2.61030 3.15970 0.17488 2 - - 1.38629 1.38629 1.38629 1.38629 0.03639 4.02485 4.02485 1.46634 0.26236 1.09861 0.40547 3 3.11246 2.61030 3.15970 0.17488 3 - - 1.38629 1.38629 1.38629 1.38629 0.03639 4.02485 4.02485 1.46634 0.26236 1.09861 0.40547 4 3.11246 2.61030 3.15970 0.17488 4 - - 1.38629 1.38629 1.38629 1.38629 0.03639 4.02485 4.02485 1.46634 0.26236 1.09861 0.40547 5 2.96390 3.61162 0.11458 3.51878 5 - - 1.38629 1.38629 1.38629 1.38629 0.03639 4.02485 4.02485 1.46634 0.26236 1.09861 0.40547 6 0.13882 3.40383 2.81721 3.30774 6 - - 1.38629 1.38629 1.38629 1.38629 0.03639 4.02485 4.02485 1.46634 0.26236 1.09861 0.40547 7 3.46025 0.12702 3.50855 2.84871 7 - - 1.38629 1.38629 1.38629 1.38629 0.03639 4.02485 4.02485 1.46634 0.26236 1.09861 0.40547 8 2.96390 3.61162 0.11458 3.51878 8 - - 1.38629 1.38629 1.38629 1.38629 0.03639 4.02485 4.02485 1.46634 0.26236 1.09861 0.40547 9 0.13882 3.40383 2.81721 3.30774 9 - - 1.38629 1.38629 1.38629 1.38629 0.03639 4.02485 4.02485 1.46634 0.26236 1.09861 0.40547 10 3.11246 2.61030 3.15970 0.17488 10 - - 1.38629 1.38629 1.38629 1.38629 0.03639 4.02485 4.02485 1.46634 0.26236 1.09861 0.40547 11 2.96390 3.61162 0.11458 3.51878 11 - - 1.38629 1.38629 1.38629 1.38629 0.03639 4.02485 4.02485 1.46634 0.26236 1.09861 0.40547 12 3.11246 2.61030 3.15970 0.17488 12 - - 1.38629 1.38629 1.38629 1.38629 0.03639 4.02485 4.02485 1.46634 0.26236 1.09861 0.40547 13 3.11246 2.61030 3.15970 0.17488 13 - - 1.38629 1.38629 1.38629 1.38629 0.03639 4.02485 4.02485 1.46634 0.26236 1.09861 0.40547 14 2.96390 3.61162 0.11458 3.51878 14 - - 1.38629 1.38629 1.38629 1.38629 0.03639 4.02485 4.02485 1.46634 0.26236 1.09861 0.40547 15 3.11246 2.61030 3.15970 0.17488 15 - - 1.38629 1.38629 1.38629 1.38629 0.03639 4.02485 4.02485 1.46634 0.26236 1.09861 0.40547 16 3.46025 0.12702 3.50855 2.84871 16 - - 1.38629 1.38629 1.38629 1.38629 0.03639 4.02485 4.02485 1.46634 0.26236 1.09861 0.40547 17 2.96390 3.61162 0.11458 3.51878 17 - - 1.38629 1.38629 1.38629 1.38629 0.03639 4.02485 4.02485 1.46634 0.26236 1.09861 0.40547 18 2.96390 3.61162 0.11458 3.51878 18 - - 1.38629 1.38629 1.38629 1.38629 0.03639 4.02485 4.02485 1.46634 0.26236 1.09861 0.40547 19 3.46025 0.12702 3.50855 2.84871 19 - - 1.38629 1.38629 1.38629 1.38629 0.03639 4.02485 4.02485 1.46634 0.26236 1.09861 0.40547 20 2.96390 3.61162 0.11458 3.51878 20 - - 1.38629 1.38629 1.38629 1.38629 0.03639 4.02485 4.02485 1.46634 0.26236 1.09861 0.40547 21 0.13882 3.40383 2.81721 3.30774 21 - - 1.38629 1.38629 1.38629 1.38629 0.03639 4.02485 4.02485 1.46634 0.26236 1.09861 0.40547 22 2.96390 3.61162 0.11458 3.51878 22 - - 1.38629 1.38629 1.38629 1.38629 0.03639 4.02485 4.02485 1.46634 0.26236 1.09861 0.40547 23 2.96390 3.61162 0.11458 3.51878 23 - - 1.38629 1.38629 1.38629 1.38629 0.03639 4.02485 4.02485 1.46634 0.26236 1.09861 0.40547 24 0.13882 3.40383 2.81721 3.30774 24 - - 1.38629 1.38629 1.38629 1.38629 0.03639 4.02485 4.02485 1.46634 0.26236 1.09861 0.40547 25 0.13882 3.40383 2.81721 3.30774 25 - - 1.38629 1.38629 1.38629 1.38629 0.03639 4.02485 4.02485 1.46634 0.26236 1.09861 0.40547 26 0.13882 3.40383 2.81721 3.30774 26 - - 1.38629 1.38629 1.38629 1.38629 0.03639 4.02485 4.02485 1.46634 0.26236 1.09861 0.40547 27 3.46025 0.12702 3.50855 2.84871 27 - - 1.38629 1.38629 1.38629 1.38629 0.03639 4.02485 4.02485 1.46634 0.26236 1.09861 0.40547 28 3.46025 0.12702 3.50855 2.84871 28 - - 1.38629 1.38629 1.38629 1.38629 0.03639 4.02485 4.02485 1.46634 0.26236 1.09861 0.40547 29 3.46025 0.12702 3.50855 2.84871 29 - - 1.38629 1.38629 1.38629 1.38629 0.03639 4.02485 4.02485 1.46634 0.26236 1.09861 0.40547 30 2.96390 3.61162 0.11458 3.51878 30 - - 1.38629 1.38629 1.38629 1.38629 0.03639 4.02485 4.02485 1.46634 0.26236 1.09861 0.40547 31 3.46025 0.12702 3.50855 2.84871 31 - - 1.38629 1.38629 1.38629 1.38629 0.03639 4.02485 4.02485 1.46634 0.26236 1.09861 0.40547 32 3.11246 2.61030 3.15970 0.17488 32 - - 1.38629 1.38629 1.38629 1.38629 0.03639 4.02485 4.02485 1.46634 0.26236 1.09861 0.40547 33 2.96390 3.61162 0.11458 3.51878 33 - - 1.38629 1.38629 1.38629 1.38629 0.03639 4.02485 4.02485 1.46634 0.26236 1.09861 0.40547 34 0.13882 3.40383 2.81721 3.30774 34 - - 1.38629 1.38629 1.38629 1.38629 0.03639 4.02485 4.02485 1.46634 0.26236 1.09861 0.40547 35 0.13882 3.40383 2.81721 3.30774 35 - - 1.38629 1.38629 1.38629 1.38629 0.03639 4.02485 4.02485 1.46634 0.26236 1.09861 0.40547 36 3.46025 0.12702 3.50855 2.84871 36 - - 1.38629 1.38629 1.38629 1.38629 0.03639 4.02485 4.02485 1.46634 0.26236 1.09861 0.40547 37 3.11246 2.61030 3.15970 0.17488 37 - - 1.38629 1.38629 1.38629 1.38629 0.03639 4.02485 4.02485 1.46634 0.26236 1.09861 0.40547 38 3.11246 2.61030 3.15970 0.17488 38 - - 1.38629 1.38629 1.38629 1.38629 0.03639 4.02485 4.02485 1.46634 0.26236 1.09861 0.40547 39 0.13882 3.40383 2.81721 3.30774 39 - - 1.38629 1.38629 1.38629 1.38629 0.03639 4.02485 4.02485 1.46634 0.26236 1.09861 0.40547 40 0.13882 3.40383 2.81721 3.30774 40 - - 1.38629 1.38629 1.38629 1.38629 0.03639 4.02485 4.02485 1.46634 0.26236 1.09861 0.40547 41 2.96390 3.61162 0.11458 3.51878 41 - - 1.38629 1.38629 1.38629 1.38629 0.03639 4.02485 4.02485 1.46634 0.26236 1.09861 0.40547 42 3.46025 0.12702 3.50855 2.84871 42 - - 1.38629 1.38629 1.38629 1.38629 0.03639 4.02485 4.02485 1.46634 0.26236 1.09861 0.40547 43 0.13882 3.40383 2.81721 3.30774 43 - - 1.38629 1.38629 1.38629 1.38629 0.03639 4.02485 4.02485 1.46634 0.26236 1.09861 0.40547 44 3.11246 2.61030 3.15970 0.17488 44 - - 1.38629 1.38629 1.38629 1.38629 0.03639 4.02485 4.02485 1.46634 0.26236 1.09861 0.40547 45 0.13882 3.40383 2.81721 3.30774 45 - - 1.38629 1.38629 1.38629 1.38629 0.01836 4.00683 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Chlorophyta_4_LSU_start_twoa_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 28 01:32:44 2012 NSEQ 4 EFFN 3.238281 CKSUM 4153052600 STATS LOCAL MSV -8.0299 0.71931 STATS LOCAL VITERBI -7.6112 0.71931 STATS LOCAL FORWARD -4.0920 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.33774 1.39206 1.38059 1.43731 1.38629 1.38629 1.38629 1.38629 0.03747 3.99605 3.99605 1.46634 0.26236 0.00000 * 1 0.14557 3.35286 2.78409 3.25194 1 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99605 3.99605 1.46634 0.26236 1.09861 0.40547 2 3.06103 2.57758 3.11024 0.18319 2 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99605 3.99605 1.46634 0.26236 1.09861 0.40547 3 3.06103 2.57758 3.11024 0.18319 3 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99605 3.99605 1.46634 0.26236 1.09861 0.40547 4 3.40150 0.13404 3.45229 2.80593 4 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99605 3.99605 1.46634 0.26236 1.09861 0.40547 5 2.92831 3.55987 0.12026 3.46167 5 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99605 3.99605 1.46634 0.26236 1.09861 0.40547 6 0.14557 3.35286 2.78409 3.25194 6 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99605 3.99605 1.46634 0.26236 1.09861 0.40547 7 3.40150 0.13404 3.45229 2.80593 7 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99605 3.99605 1.46634 0.26236 1.09861 0.40547 8 3.40150 0.13404 3.45229 2.80593 8 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99605 3.99605 1.46634 0.26236 1.09861 0.40547 9 3.06103 2.57758 3.11024 0.18319 9 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99605 3.99605 1.46634 0.26236 1.09861 0.40547 10 2.92831 3.55987 0.12026 3.46167 10 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99605 3.99605 1.46634 0.26236 1.09861 0.40547 11 0.14557 3.35286 2.78409 3.25194 11 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99605 3.99605 1.46634 0.26236 1.09861 0.40547 12 2.92831 3.55987 0.12026 3.46167 12 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99605 3.99605 1.46634 0.26236 1.09861 0.40547 13 3.06103 2.57758 3.11024 0.18319 13 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99605 3.99605 1.46634 0.26236 1.09861 0.40547 14 3.06103 2.57758 3.11024 0.18319 14 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99605 3.99605 1.46634 0.26236 1.09861 0.40547 15 3.40150 0.13404 3.45229 2.80593 15 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99605 3.99605 1.46634 0.26236 1.09861 0.40547 16 0.14557 3.35286 2.78409 3.25194 16 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99605 3.99605 1.46634 0.26236 1.09861 0.40547 17 2.92831 3.55987 0.12026 3.46167 17 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99605 3.99605 1.46634 0.26236 1.09861 0.40547 18 2.92831 3.55987 0.12026 3.46167 18 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99605 3.99605 1.46634 0.26236 1.09861 0.40547 19 3.06103 2.57758 3.11024 0.18319 19 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99605 3.99605 1.46634 0.26236 1.09861 0.40547 20 2.92831 3.55987 0.12026 3.46167 20 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99605 3.99605 1.46634 0.26236 1.09861 0.40547 21 0.14557 3.35286 2.78409 3.25194 21 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99605 3.99605 1.46634 0.26236 1.09861 0.40547 22 2.92831 3.55987 0.12026 3.46167 22 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99605 3.99605 1.46634 0.26236 1.09861 0.40547 23 2.92831 3.55987 0.12026 3.46167 23 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99605 3.99605 1.46634 0.26236 1.09861 0.40547 24 3.40150 0.13404 3.45229 2.80593 24 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99605 3.99605 1.46634 0.26236 1.09861 0.40547 25 3.06103 2.57758 3.11024 0.18319 25 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99605 3.99605 1.46634 0.26236 1.09861 0.40547 26 0.14557 3.35286 2.78409 3.25194 26 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99605 3.99605 1.46634 0.26236 1.09861 0.40547 27 3.40150 0.13404 3.45229 2.80593 27 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99605 3.99605 1.46634 0.26236 1.09861 0.40547 28 3.40150 0.13404 3.45229 2.80593 28 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99605 3.99605 1.46634 0.26236 1.09861 0.40547 29 3.40150 0.13404 3.45229 2.80593 29 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99605 3.99605 1.46634 0.26236 1.09861 0.40547 30 2.92831 3.55987 0.12026 3.46167 30 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99605 3.99605 1.46634 0.26236 1.09861 0.40547 31 3.40150 0.13404 3.45229 2.80593 31 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99605 3.99605 1.46634 0.26236 1.09861 0.40547 32 3.06103 2.57758 3.11024 0.18319 32 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99605 3.99605 1.46634 0.26236 1.09861 0.40547 33 2.92831 3.55987 0.12026 3.46167 33 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99605 3.99605 1.46634 0.26236 1.09861 0.40547 34 0.14557 3.35286 2.78409 3.25194 34 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99605 3.99605 1.46634 0.26236 1.09861 0.40547 35 0.14557 3.35286 2.78409 3.25194 35 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99605 3.99605 1.46634 0.26236 1.09861 0.40547 36 3.40150 0.13404 3.45229 2.80593 36 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99605 3.99605 1.46634 0.26236 1.09861 0.40547 37 3.06103 2.57758 3.11024 0.18319 37 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99605 3.99605 1.46634 0.26236 1.09861 0.40547 38 3.06103 2.57758 3.11024 0.18319 38 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99605 3.99605 1.46634 0.26236 1.09861 0.40547 39 0.14557 3.35286 2.78409 3.25194 39 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99605 3.99605 1.46634 0.26236 1.09861 0.40547 40 0.14557 3.35286 2.78409 3.25194 40 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99605 3.99605 1.46634 0.26236 1.09861 0.40547 41 2.92831 3.55987 0.12026 3.46167 41 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99605 3.99605 1.46634 0.26236 1.09861 0.40547 42 3.40150 0.13404 3.45229 2.80593 42 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99605 3.99605 1.46634 0.26236 1.09861 0.40547 43 0.14557 3.35286 2.78409 3.25194 43 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99605 3.99605 1.46634 0.26236 1.09861 0.40547 44 3.06103 2.57758 3.11024 0.18319 44 - - 1.38629 1.38629 1.38629 1.38629 0.03747 3.99605 3.99605 1.46634 0.26236 1.09861 0.40547 45 0.14557 3.35286 2.78409 3.25194 45 - - 1.38629 1.38629 1.38629 1.38629 0.01891 3.97749 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 4_LSU_Chlorophyta_4_LSU_start_twob_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Sat Jan 28 01:32:51 2012 NSEQ 2 EFFN 2.000000 CKSUM 1487093802 STATS LOCAL MSV -7.3807 0.72793 STATS LOCAL VITERBI -8.0673 0.72793 STATS LOCAL FORWARD -3.4730 0.72793 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.28936 1.34641 1.43436 1.48672 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 0.23862 2.84929 2.43386 2.70756 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.57915 2.25909 2.64442 0.28946 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.81865 0.23582 2.88868 2.35662 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.57915 2.25909 2.64442 0.28946 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.53331 3.02441 0.20344 2.88069 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.53331 3.02441 0.20344 2.88069 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 2.81865 0.23582 2.88868 2.35662 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 2.81865 0.23582 2.88868 2.35662 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.57915 2.25909 2.64442 0.28946 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.81865 0.23582 2.88868 2.35662 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.23862 2.84929 2.43386 2.70756 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.23862 2.84929 2.43386 2.70756 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 0.23862 2.84929 2.43386 2.70756 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.81865 0.23582 2.88868 2.35662 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 0.23862 2.84929 2.43386 2.70756 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.53331 3.02441 0.20344 2.88069 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.53331 3.02441 0.20344 2.88069 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.57915 2.25909 2.64442 0.28946 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 0.23862 2.84929 2.43386 2.70756 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 2.53331 3.02441 0.20344 2.88069 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.81865 0.23582 2.88868 2.35662 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.57915 2.25909 2.64442 0.28946 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.23862 2.84929 2.43386 2.70756 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 2.81865 0.23582 2.88868 2.35662 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.53331 3.02441 0.20344 2.88069 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.81865 0.23582 2.88868 2.35662 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.57915 2.25909 2.64442 0.28946 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.53331 3.02441 0.20344 2.88069 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 0.23862 2.84929 2.43386 2.70756 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 0.23862 2.84929 2.43386 2.70756 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.81865 0.23582 2.88868 2.35662 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.57915 2.25909 2.64442 0.28946 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.57915 2.25909 2.64442 0.28946 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.23862 2.84929 2.43386 2.70756 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 0.23862 2.84929 2.43386 2.70756 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.53331 3.02441 0.20344 2.88069 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.81865 0.23582 2.88868 2.35662 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.23862 2.84929 2.43386 2.70756 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 1_SSU_Chlorophyta_1_SSU_end_five_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Jan 25 23:25:17 2012 NSEQ 7 EFFN 3.264160 CKSUM 2375868780 STATS LOCAL MSV -8.0557 0.71932 STATS LOCAL VITERBI -7.7021 0.71932 STATS LOCAL FORWARD -4.0473 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.21299 1.71353 1.30623 1.37981 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 0.00000 * 1 0.14442 3.36134 2.78962 3.26122 1 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 2 2.93428 3.56852 0.11929 3.47120 2 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 3 3.06955 2.58301 3.11843 0.18178 3 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 4 3.41129 0.13284 3.46167 2.81309 4 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 5 2.93428 3.56852 0.11929 3.47120 5 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 6 3.06955 2.58301 3.11843 0.18178 6 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 7 0.14442 3.36134 2.78962 3.26122 7 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 8 0.14442 3.36134 2.78962 3.26122 8 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 9 3.41129 0.13284 3.46167 2.81309 9 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 10 0.14442 3.36134 2.78962 3.26122 10 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 11 0.14442 3.36134 2.78962 3.26122 11 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 12 2.93428 3.56852 0.11929 3.47120 12 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 13 2.93428 3.56852 0.11929 3.47120 13 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 14 3.06955 2.58301 3.11843 0.18178 14 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 15 3.06955 2.58301 3.11843 0.18178 15 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 16 3.06955 2.58301 3.11843 0.18178 16 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 17 3.06955 2.58301 3.11843 0.18178 17 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 18 3.41129 0.13284 3.46167 2.81309 18 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 19 2.93428 3.56852 0.11929 3.47120 19 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 20 3.06955 2.58301 3.11843 0.18178 20 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 21 0.14442 3.36134 2.78962 3.26122 21 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 22 2.93428 3.56852 0.11929 3.47120 22 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 23 2.93428 3.56852 0.11929 3.47120 23 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 24 3.06955 2.58301 3.11843 0.18178 24 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 25 2.93428 3.56852 0.11929 3.47120 25 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 26 0.14442 3.36134 2.78962 3.26122 26 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 27 0.14442 3.36134 2.78962 3.26122 27 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 28 3.41129 0.13284 3.46167 2.81309 28 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 29 3.41129 0.13284 3.46167 2.81309 29 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 30 3.06955 2.58301 3.11843 0.18178 30 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 31 2.93428 3.56852 0.11929 3.47120 31 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 32 3.41129 0.13284 3.46167 2.81309 32 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 33 2.93428 3.56852 0.11929 3.47120 33 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 34 0.14442 3.36134 2.78962 3.26122 34 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 35 0.14442 3.36134 2.78962 3.26122 35 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 36 0.14442 3.36134 2.78962 3.26122 36 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 37 2.93428 3.56852 0.11929 3.47120 37 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 38 2.93428 3.56852 0.11929 3.47120 38 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 39 0.14442 3.36134 2.78962 3.26122 39 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 40 3.06955 2.58301 3.11843 0.18178 40 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 41 3.41129 0.13284 3.46167 2.81309 41 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 42 0.14442 3.36134 2.78962 3.26122 42 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 43 3.06955 2.58301 3.11843 0.18178 43 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 44 3.06955 2.58301 3.11843 0.18178 44 - - 1.38629 1.38629 1.38629 1.38629 0.03729 4.00080 4.00080 1.46634 0.26236 1.09861 0.40547 45 0.14442 3.36134 2.78962 3.26122 45 - - 1.38629 1.38629 1.38629 1.38629 0.01882 3.98232 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 1_SSU_Chlorophyta_1_SSU_end_four_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Jan 25 23:25:06 2012 NSEQ 2 EFFN 2.000000 CKSUM 1482627613 STATS LOCAL MSV -7.6096 0.72751 STATS LOCAL VITERBI -8.2882 0.72751 STATS LOCAL FORWARD -3.6834 0.72751 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.33866 1.47421 1.20851 1.55969 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 0.23862 2.84929 2.43386 2.70756 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.53331 3.02441 0.20344 2.88069 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.57915 2.25909 2.64442 0.28946 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.53331 3.02441 0.20344 2.88069 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.57915 2.25909 2.64442 0.28946 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 0.23862 2.84929 2.43386 2.70756 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 0.23862 2.84929 2.43386 2.70756 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.81865 0.23582 2.88868 2.35662 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 0.23862 2.84929 2.43386 2.70756 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.23862 2.84929 2.43386 2.70756 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 2.53331 3.02441 0.20344 2.88069 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.53331 3.02441 0.20344 2.88069 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.81865 0.23582 2.88868 2.35662 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.57915 2.25909 2.64442 0.28946 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.81865 0.23582 2.88868 2.35662 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.57915 2.25909 2.64442 0.28946 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 0.23862 2.84929 2.43386 2.70756 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.57915 2.25909 2.64442 0.28946 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.53331 3.02441 0.20344 2.88069 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.23862 2.84929 2.43386 2.70756 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 0.23862 2.84929 2.43386 2.70756 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.53331 3.02441 0.20344 2.88069 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.53331 3.02441 0.20344 2.88069 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 0.23862 2.84929 2.43386 2.70756 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 2.53331 3.02441 0.20344 2.88069 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.53331 3.02441 0.20344 2.88069 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.23862 2.84929 2.43386 2.70756 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 2.81865 0.23582 2.88868 2.35662 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 0.23862 2.84929 2.43386 2.70756 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 0.23862 2.84929 2.43386 2.70756 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 1_SSU_Chlorophyta_1_SSU_end_one_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Jan 25 23:24:42 2012 NSEQ 17 EFFN 3.183350 CKSUM 2896528741 STATS LOCAL MSV -8.0312 0.71931 STATS LOCAL VITERBI -7.7110 0.71931 STATS LOCAL FORWARD -4.3559 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.39905 1.54747 1.13673 1.51634 1.38629 1.38629 1.38629 1.38629 0.03786 3.98590 3.98590 1.46634 0.26236 0.00000 * 1 0.14808 3.33460 2.77216 3.23198 1 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98590 3.98590 1.46634 0.26236 1.09861 0.40547 2 2.91540 3.54122 0.12238 3.44111 2 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98590 3.98590 1.46634 0.26236 1.09861 0.40547 3 3.04275 2.56593 3.09265 0.18625 3 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98590 3.98590 1.46634 0.26236 1.09861 0.40547 4 3.38042 0.13667 3.43208 2.79048 4 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98590 3.98590 1.46634 0.26236 1.09861 0.40547 5 2.91540 3.54122 0.12238 3.44111 5 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98590 3.98590 1.46634 0.26236 1.09861 0.40547 6 3.04275 2.56593 3.09265 0.18625 6 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98590 3.98590 1.46634 0.26236 1.09861 0.40547 7 0.14808 3.33460 2.77216 3.23198 7 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98590 3.98590 1.46634 0.26236 1.09861 0.40547 8 0.14808 3.33460 2.77216 3.23198 8 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98590 3.98590 1.46634 0.26236 1.09861 0.40547 9 3.38042 0.13667 3.43208 2.79048 9 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98590 3.98590 1.46634 0.26236 1.09861 0.40547 10 0.14808 3.33460 2.77216 3.23198 10 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98590 3.98590 1.46634 0.26236 1.09861 0.40547 11 0.14808 3.33460 2.77216 3.23198 11 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98590 3.98590 1.46634 0.26236 1.09861 0.40547 12 2.91540 3.54122 0.12238 3.44111 12 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98590 3.98590 1.46634 0.26236 1.09861 0.40547 13 2.91540 3.54122 0.12238 3.44111 13 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98590 3.98590 1.46634 0.26236 1.09861 0.40547 14 3.04275 2.56593 3.09265 0.18625 14 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98590 3.98590 1.46634 0.26236 1.09861 0.40547 15 3.38042 0.13667 3.43208 2.79048 15 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98590 3.98590 1.46634 0.26236 1.09861 0.40547 16 3.04275 2.56593 3.09265 0.18625 16 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98590 3.98590 1.46634 0.26236 1.09861 0.40547 17 3.38042 0.13667 3.43208 2.79048 17 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98590 3.98590 1.46634 0.26236 1.09861 0.40547 18 3.38042 0.13667 3.43208 2.79048 18 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98590 3.98590 1.46634 0.26236 1.09861 0.40547 19 2.91540 3.54122 0.12238 3.44111 19 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98590 3.98590 1.46634 0.26236 1.09861 0.40547 20 3.04275 2.56593 3.09265 0.18625 20 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98590 3.98590 1.46634 0.26236 1.09861 0.40547 21 0.14808 3.33460 2.77216 3.23198 21 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98590 3.98590 1.46634 0.26236 1.09861 0.40547 22 2.91540 3.54122 0.12238 3.44111 22 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98590 3.98590 1.46634 0.26236 1.09861 0.40547 23 2.91540 3.54122 0.12238 3.44111 23 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98590 3.98590 1.46634 0.26236 1.09861 0.40547 24 3.04275 2.56593 3.09265 0.18625 24 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98590 3.98590 1.46634 0.26236 1.09861 0.40547 25 2.91540 3.54122 0.12238 3.44111 25 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98590 3.98590 1.46634 0.26236 1.09861 0.40547 26 0.14808 3.33460 2.77216 3.23198 26 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98590 3.98590 1.46634 0.26236 1.09861 0.40547 27 0.14808 3.33460 2.77216 3.23198 27 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98590 3.98590 1.46634 0.26236 1.09861 0.40547 28 3.38042 0.13667 3.43208 2.79048 28 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98590 3.98590 1.46634 0.26236 1.09861 0.40547 29 3.38042 0.13667 3.43208 2.79048 29 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98590 3.98590 1.46634 0.26236 1.09861 0.40547 30 3.04275 2.56593 3.09265 0.18625 30 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98590 3.98590 1.46634 0.26236 1.09861 0.40547 31 2.91540 3.54122 0.12238 3.44111 31 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98590 3.98590 1.46634 0.26236 1.09861 0.40547 32 3.38042 0.13667 3.43208 2.79048 32 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98590 3.98590 1.46634 0.26236 1.09861 0.40547 33 2.91540 3.54122 0.12238 3.44111 33 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98590 3.98590 1.46634 0.26236 1.09861 0.40547 34 2.91540 3.54122 0.12238 3.44111 34 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98590 3.98590 1.46634 0.26236 1.09861 0.40547 35 0.14808 3.33460 2.77216 3.23198 35 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98590 3.98590 1.46634 0.26236 1.09861 0.40547 36 2.91540 3.54122 0.12238 3.44111 36 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98590 3.98590 1.46634 0.26236 1.09861 0.40547 37 2.91540 3.54122 0.12238 3.44111 37 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98590 3.98590 1.46634 0.26236 1.09861 0.40547 38 2.91540 3.54122 0.12238 3.44111 38 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98590 3.98590 1.46634 0.26236 1.09861 0.40547 39 0.14808 3.33460 2.77216 3.23198 39 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98590 3.98590 1.46634 0.26236 1.09861 0.40547 40 3.04275 2.56593 3.09265 0.18625 40 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98590 3.98590 1.46634 0.26236 1.09861 0.40547 41 3.38042 0.13667 3.43208 2.79048 41 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98590 3.98590 1.46634 0.26236 1.09861 0.40547 42 0.14808 3.33460 2.77216 3.23198 42 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98590 3.98590 1.46634 0.26236 1.09861 0.40547 43 3.04275 2.56593 3.09265 0.18625 43 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98590 3.98590 1.46634 0.26236 1.09861 0.40547 44 3.04275 2.56593 3.09265 0.18625 44 - - 1.38629 1.38629 1.38629 1.38629 0.03786 3.98590 3.98590 1.46634 0.26236 1.09861 0.40547 45 2.91540 3.54122 0.12238 3.44111 45 - - 1.38629 1.38629 1.38629 1.38629 0.01911 3.96715 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 1_SSU_Chlorophyta_1_SSU_end_seven_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Jan 25 23:25:34 2012 NSEQ 2 EFFN 2.000000 CKSUM 1241919471 STATS LOCAL MSV -7.4998 0.72801 STATS LOCAL VITERBI -8.1905 0.72801 STATS LOCAL FORWARD -3.4574 0.72801 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.33801 1.52553 1.31435 1.38040 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 0.00000 * 1 0.23862 2.84929 2.43386 2.70756 1 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 2 2.57915 2.25909 2.64442 0.28946 2 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 3 2.57915 2.25909 2.64442 0.28946 3 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 4 2.81865 0.23582 2.88868 2.35662 4 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 5 2.53331 3.02441 0.20344 2.88069 5 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 6 2.57915 2.25909 2.64442 0.28946 6 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 7 0.23862 2.84929 2.43386 2.70756 7 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 8 0.23862 2.84929 2.43386 2.70756 8 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 9 2.81865 0.23582 2.88868 2.35662 9 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 10 2.81865 0.23582 2.88868 2.35662 10 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 11 0.23862 2.84929 2.43386 2.70756 11 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 12 0.23862 2.84929 2.43386 2.70756 12 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 13 2.53331 3.02441 0.20344 2.88069 13 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 14 2.57915 2.25909 2.64442 0.28946 14 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 15 2.57915 2.25909 2.64442 0.28946 15 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 16 2.57915 2.25909 2.64442 0.28946 16 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 17 2.81865 0.23582 2.88868 2.35662 17 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 18 2.81865 0.23582 2.88868 2.35662 18 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 19 2.53331 3.02441 0.20344 2.88069 19 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 20 2.57915 2.25909 2.64442 0.28946 20 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 21 0.23862 2.84929 2.43386 2.70756 21 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 22 2.53331 3.02441 0.20344 2.88069 22 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 23 2.53331 3.02441 0.20344 2.88069 23 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 24 2.57915 2.25909 2.64442 0.28946 24 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 25 2.53331 3.02441 0.20344 2.88069 25 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 26 0.23862 2.84929 2.43386 2.70756 26 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 27 0.23862 2.84929 2.43386 2.70756 27 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 28 2.81865 0.23582 2.88868 2.35662 28 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 29 2.81865 0.23582 2.88868 2.35662 29 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 30 2.57915 2.25909 2.64442 0.28946 30 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 31 2.53331 3.02441 0.20344 2.88069 31 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 32 2.81865 0.23582 2.88868 2.35662 32 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 33 2.53331 3.02441 0.20344 2.88069 33 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 34 2.53331 3.02441 0.20344 2.88069 34 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 35 0.23862 2.84929 2.43386 2.70756 35 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 36 0.23862 2.84929 2.43386 2.70756 36 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 37 2.53331 3.02441 0.20344 2.88069 37 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 38 2.53331 3.02441 0.20344 2.88069 38 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 39 0.23862 2.84929 2.43386 2.70756 39 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 40 2.57915 2.25909 2.64442 0.28946 40 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 41 2.81865 0.23582 2.88868 2.35662 41 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 42 0.23862 2.84929 2.43386 2.70756 42 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 43 2.57915 2.25909 2.64442 0.28946 43 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 44 2.57915 2.25909 2.64442 0.28946 44 - - 1.38629 1.38629 1.38629 1.38629 0.04879 3.73767 3.73767 1.46634 0.26236 1.09861 0.40547 45 2.53331 3.02441 0.20344 2.88069 45 - - 1.38629 1.38629 1.38629 1.38629 0.02469 3.71357 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 1_SSU_Chlorophyta_1_SSU_end_six_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Jan 25 23:25:26 2012 NSEQ 5 EFFN 3.247070 CKSUM 1322824676 STATS LOCAL MSV -7.9755 0.71931 STATS LOCAL VITERBI -7.6686 0.71931 STATS LOCAL FORWARD -4.1183 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.33346 1.62242 1.24914 1.37727 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 0.00000 * 1 0.14518 3.35575 2.78597 3.25510 1 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 2 3.06393 2.57943 3.11303 0.18271 2 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 3 3.06393 2.57943 3.11303 0.18271 3 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 4 3.40484 0.13363 3.45549 2.80837 4 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 5 2.93035 3.56282 0.11992 3.46492 5 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 6 3.06393 2.57943 3.11303 0.18271 6 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 7 0.14518 3.35575 2.78597 3.25510 7 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 8 0.14518 3.35575 2.78597 3.25510 8 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 9 3.40484 0.13363 3.45549 2.80837 9 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 10 0.14518 3.35575 2.78597 3.25510 10 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 11 0.14518 3.35575 2.78597 3.25510 11 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 12 2.93035 3.56282 0.11992 3.46492 12 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 13 2.93035 3.56282 0.11992 3.46492 13 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 14 3.06393 2.57943 3.11303 0.18271 14 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 15 3.06393 2.57943 3.11303 0.18271 15 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 16 3.06393 2.57943 3.11303 0.18271 16 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 17 3.40484 0.13363 3.45549 2.80837 17 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 18 3.40484 0.13363 3.45549 2.80837 18 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 19 2.93035 3.56282 0.11992 3.46492 19 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 20 3.06393 2.57943 3.11303 0.18271 20 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 21 0.14518 3.35575 2.78597 3.25510 21 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 22 2.93035 3.56282 0.11992 3.46492 22 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 23 2.93035 3.56282 0.11992 3.46492 23 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 24 3.06393 2.57943 3.11303 0.18271 24 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 25 2.93035 3.56282 0.11992 3.46492 25 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 26 0.14518 3.35575 2.78597 3.25510 26 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 27 0.14518 3.35575 2.78597 3.25510 27 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 28 3.40484 0.13363 3.45549 2.80837 28 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 29 3.40484 0.13363 3.45549 2.80837 29 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 30 3.06393 2.57943 3.11303 0.18271 30 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 31 2.93035 3.56282 0.11992 3.46492 31 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 32 3.40484 0.13363 3.45549 2.80837 32 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 33 2.93035 3.56282 0.11992 3.46492 33 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 34 2.93035 3.56282 0.11992 3.46492 34 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 35 0.14518 3.35575 2.78597 3.25510 35 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 36 0.14518 3.35575 2.78597 3.25510 36 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 37 2.93035 3.56282 0.11992 3.46492 37 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 38 2.93035 3.56282 0.11992 3.46492 38 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 39 0.14518 3.35575 2.78597 3.25510 39 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 40 3.06393 2.57943 3.11303 0.18271 40 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 41 3.40484 0.13363 3.45549 2.80837 41 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 42 0.14518 3.35575 2.78597 3.25510 42 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 43 3.06393 2.57943 3.11303 0.18271 43 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 44 3.06393 2.57943 3.11303 0.18271 44 - - 1.38629 1.38629 1.38629 1.38629 0.03741 3.99766 3.99766 1.46634 0.26236 1.09861 0.40547 45 2.93035 3.56282 0.11992 3.46492 45 - - 1.38629 1.38629 1.38629 1.38629 0.01888 3.97913 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 1_SSU_Chlorophyta_1_SSU_end_three_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Jan 25 23:24:57 2012 NSEQ 4 EFFN 3.230469 CKSUM 805615287 STATS LOCAL MSV -8.0211 0.71931 STATS LOCAL VITERBI -7.6818 0.71931 STATS LOCAL FORWARD -4.1105 0.71931 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.27186 1.62653 1.24657 1.44566 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 0.00000 * 1 0.14592 3.35028 2.78241 3.24912 1 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 2 2.92650 3.55724 0.12055 3.45877 2 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 3 3.05845 2.57594 3.10775 0.18362 3 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 4 3.39853 0.13441 3.44944 2.80375 4 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 5 2.92650 3.55724 0.12055 3.45877 5 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 6 3.05845 2.57594 3.10775 0.18362 6 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 7 0.14592 3.35028 2.78241 3.24912 7 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 8 0.14592 3.35028 2.78241 3.24912 8 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 9 3.39853 0.13441 3.44944 2.80375 9 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 10 0.14592 3.35028 2.78241 3.24912 10 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 11 0.14592 3.35028 2.78241 3.24912 11 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 12 2.92650 3.55724 0.12055 3.45877 12 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 13 2.92650 3.55724 0.12055 3.45877 13 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 14 3.05845 2.57594 3.10775 0.18362 14 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 15 3.05845 2.57594 3.10775 0.18362 15 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 16 3.05845 2.57594 3.10775 0.18362 16 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 17 3.39853 0.13441 3.44944 2.80375 17 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 18 3.39853 0.13441 3.44944 2.80375 18 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 19 2.92650 3.55724 0.12055 3.45877 19 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 20 3.05845 2.57594 3.10775 0.18362 20 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 21 0.14592 3.35028 2.78241 3.24912 21 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 22 2.92650 3.55724 0.12055 3.45877 22 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 23 2.92650 3.55724 0.12055 3.45877 23 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 24 3.05845 2.57594 3.10775 0.18362 24 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 25 2.92650 3.55724 0.12055 3.45877 25 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 26 0.14592 3.35028 2.78241 3.24912 26 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 27 0.14592 3.35028 2.78241 3.24912 27 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 28 3.39853 0.13441 3.44944 2.80375 28 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 29 3.39853 0.13441 3.44944 2.80375 29 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 30 3.05845 2.57594 3.10775 0.18362 30 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 31 2.92650 3.55724 0.12055 3.45877 31 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 32 3.39853 0.13441 3.44944 2.80375 32 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 33 2.92650 3.55724 0.12055 3.45877 33 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 34 2.92650 3.55724 0.12055 3.45877 34 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 35 0.14592 3.35028 2.78241 3.24912 35 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 36 0.14592 3.35028 2.78241 3.24912 36 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 37 2.92650 3.55724 0.12055 3.45877 37 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 38 2.92650 3.55724 0.12055 3.45877 38 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 39 0.14592 3.35028 2.78241 3.24912 39 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 40 3.05845 2.57594 3.10775 0.18362 40 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 41 3.39853 0.13441 3.44944 2.80375 41 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 42 0.14592 3.35028 2.78241 3.24912 42 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 43 3.05845 2.57594 3.10775 0.18362 43 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 44 3.05845 2.57594 3.10775 0.18362 44 - - 1.38629 1.38629 1.38629 1.38629 0.03752 3.99461 3.99461 1.46634 0.26236 1.09861 0.40547 45 0.14592 3.35028 2.78241 3.24912 45 - - 1.38629 1.38629 1.38629 1.38629 0.01894 3.97602 * 1.46634 0.26236 0.00000 * // HMMER3/b [3.0 | March 2010] NAME 1_SSU_Chlorophyta_1_SSU_end_two_long LENG 45 ALPH DNA RF no CS no MAP yes DATE Wed Jan 25 23:24:49 2012 NSEQ 14 EFFN 3.216309 CKSUM 4158192941 STATS LOCAL MSV -7.9726 0.71932 STATS LOCAL VITERBI -7.6791 0.71932 STATS LOCAL FORWARD -4.0862 0.71932 HMM A C G T m->m m->i m->d i->m i->i d->m d->d COMPO 1.33300 1.62698 1.18954 1.44633 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 0.00000 * 1 0.14656 3.34560 2.77935 3.24400 1 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 2 2.92319 3.55246 0.12110 3.45350 2 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 3 3.05375 2.57294 3.10323 0.18440 3 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 4 3.39312 0.13508 3.44425 2.79979 4 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 5 2.92319 3.55246 0.12110 3.45350 5 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 6 3.05375 2.57294 3.10323 0.18440 6 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 7 0.14656 3.34560 2.77935 3.24400 7 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 8 0.14656 3.34560 2.77935 3.24400 8 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 9 3.39312 0.13508 3.44425 2.79979 9 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 10 0.14656 3.34560 2.77935 3.24400 10 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 11 0.14656 3.34560 2.77935 3.24400 11 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 12 2.92319 3.55246 0.12110 3.45350 12 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 13 2.92319 3.55246 0.12110 3.45350 13 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 14 3.05375 2.57294 3.10323 0.18440 14 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 15 3.05375 2.57294 3.10323 0.18440 15 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 16 3.05375 2.57294 3.10323 0.18440 16 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 17 3.39312 0.13508 3.44425 2.79979 17 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 18 3.39312 0.13508 3.44425 2.79979 18 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 19 2.92319 3.55246 0.12110 3.45350 19 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 20 3.05375 2.57294 3.10323 0.18440 20 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 21 0.14656 3.34560 2.77935 3.24400 21 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 22 2.92319 3.55246 0.12110 3.45350 22 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 23 2.92319 3.55246 0.12110 3.45350 23 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 24 3.05375 2.57294 3.10323 0.18440 24 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 25 2.92319 3.55246 0.12110 3.45350 25 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 26 0.14656 3.34560 2.77935 3.24400 26 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 27 0.14656 3.34560 2.77935 3.24400 27 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 28 3.39312 0.13508 3.44425 2.79979 28 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 29 3.39312 0.13508 3.44425 2.79979 29 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 30 3.05375 2.57294 3.10323 0.18440 30 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 31 2.92319 3.55246 0.12110 3.45350 31 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 32 3.39312 0.13508 3.44425 2.79979 32 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 33 2.92319 3.55246 0.12110 3.45350 33 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 34 2.92319 3.55246 0.12110 3.45350 34 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 35 0.14656 3.34560 2.77935 3.24400 35 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 36 0.14656 3.34560 2.77935 3.24400 36 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 37 2.92319 3.55246 0.12110 3.45350 37 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 38 2.92319 3.55246 0.12110 3.45350 38 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 39 0.14656 3.34560 2.77935 3.24400 39 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 40 3.05375 2.57294 3.10323 0.18440 40 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 41 3.39312 0.13508 3.44425 2.79979 41 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 42 0.14656 3.34560 2.77935 3.24400 42 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 43 3.05375 2.57294 3.10323 0.18440 43 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 44 3.05375 2.57294 3.10323 0.18440 44 - - 1.38629 1.38629 1.38629 1.38629 0.03762 3.99200 3.99200 1.46634 0.26236 1.09861 0.40547 45 2.92319 3.55246 0.12110 3.45350 45 - - 1.38629 1.38629 1.38629 1.38629 0.01899 3.97336 * 1.46634 0.26236 0.00000 * //