Mercurial > repos > onnodg > blast_annotations_processor

comparison test-data/obiclean_output2.txt @ 2:9ca209477dfd draft default tip

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planemo upload for repository https://github.com/Onnodg/Naturalis_NLOOR/tree/main/NLOOR_scripts/process_annotations_tool commit 4017d38cf327c48a6252e488ba792527dae97a70-dirty
author onnodg
date Mon, 15 Dec 2025 16:43:36 +0000
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1:2acf82433aa4 2:9ca209477dfd
1 Uncertain count per taxonomic level{'K': 0, 'P': 0, 'C': 0, 'O': 13, 'F': 7, 'G': 575, 'S': 1227}
2 percentage_rooted number_rooted total_num taxon_level indentificatie
3 100.00 3156 3156 K Viridiplantae
4 100.00 3156 3156 P Streptophyta
5 100.00 3156 3156 C Magnoliopsida
6 1.74 55 3156 O Apiales
7 1.74 55 3156 F Apiaceae
8 1.14 36 3156 G Aegopodium
9 1.14 36 3156 S Aegopodium podagraria
10 0.16 5 3156 G Apium
11 0.16 5 3156 S Apium graveolens
12 0.44 14 3156 G Uncertain taxa
13 4.78 151 3156 O Asterales
14 4.78 151 3156 F Asteraceae
15 0.06 2 3156 G Achillea
16 0.06 2 3156 S Achillea millefolium
17 0.16 5 3156 G Artemisia
18 0.16 5 3156 S Uncertain taxa
19 0.54 17 3156 G Cirsium
20 0.48 15 3156 S Cirsium arvense
21 0.06 2 3156 S Cirsium vulgare
22 0.06 2 3156 G Erigeron
23 0.06 2 3156 S Uncertain taxa
24 0.03 1 3156 G Galinsoga
25 0.03 1 3156 S Uncertain taxa
26 0.03 1 3156 G Gnaphalium
27 0.03 1 3156 S Gnaphalium uliginosum
28 0.03 1 3156 G Inula
29 0.03 1 3156 S Inula salicina
30 0.03 1 3156 G Lactuca
31 0.03 1 3156 S Lactuca sativa
32 0.06 2 3156 G Matricaria
33 0.06 2 3156 S Matricaria chamomilla
34 0.13 4 3156 G Tussilago
35 0.13 4 3156 S Tussilago farfara
36 3.58 113 3156 G Uncertain taxa
37 0.06 2 3156 G Xanthium
38 0.06 2 3156 S Xanthium strumarium
39 0.10 3 3156 O Brassicales
40 0.10 3 3156 F Brassicaceae
41 0.10 3 3156 G Cardamine
42 0.10 3 3156 S Uncertain taxa
43 3.26 103 3156 O Caryophyllales
44 3.26 103 3156 F Polygonaceae
45 0.92 29 3156 G Polygonum
46 0.92 29 3156 S Polygonum aviculare
47 2.28 72 3156 G Rumex
48 2.28 72 3156 S Uncertain taxa
49 0.06 2 3156 G Uncertain taxa
50 0.03 1 3156 O Cornales
51 0.03 1 3156 F Cornaceae
52 0.03 1 3156 G Cornus
53 0.03 1 3156 S Cornus mas
54 0.13 4 3156 O Dipsacales
55 0.13 4 3156 F Adoxaceae
56 0.13 4 3156 G Sambucus
57 0.13 4 3156 S Uncertain taxa
58 0.19 6 3156 O Ericales
59 0.03 1 3156 F Ericaceae
60 0.03 1 3156 G Calluna
61 0.03 1 3156 S Calluna vulgaris
62 0.16 5 3156 F Primulaceae
63 0.16 5 3156 G Lysimachia
64 0.03 1 3156 S Lysimachia thyrsiflora
65 0.13 4 3156 S Lysimachia vulgaris
66 4.15 131 3156 O Fabales
67 4.15 131 3156 F Fabaceae
68 0.48 15 3156 G Lathyrus
69 0.48 15 3156 S Lathyrus pratensis
70 0.03 1 3156 G Pisum
71 0.03 1 3156 S Pisum sativum
72 3.36 106 3156 G Trifolium
73 0.10 3 3156 S Trifolium arvense
74 2.76 87 3156 S Trifolium medium
75 0.32 10 3156 S Trifolium repens
76 0.19 6 3156 S Uncertain taxa
77 0.03 1 3156 G Uncertain taxa
78 0.25 8 3156 G Vicia
79 0.25 8 3156 S Vicia faba
80 11.44 361 3156 O Fagales
81 9.19 290 3156 F Betulaceae
82 5.77 182 3156 G Alnus
83 5.77 182 3156 S Alnus incana
84 0.51 16 3156 G Betula
85 0.51 16 3156 S Betula pendula
86 2.72 86 3156 G Carpinus
87 2.72 86 3156 S Carpinus betulus
88 0.19 6 3156 G Uncertain taxa
89 2.15 68 3156 F Fagaceae
90 0.35 11 3156 G Fagus
91 0.35 11 3156 S Fagus sylvatica
92 1.81 57 3156 G Quercus
93 1.81 57 3156 S Quercus rubra
94 0.10 3 3156 F Juglandaceae
95 0.10 3 3156 G Juglans
96 0.10 3 3156 S Juglans regia
97 0.06 2 3156 O Gentianales
98 0.06 2 3156 F Apocynaceae
99 0.06 2 3156 G Vinca
100 0.06 2 3156 S Vinca minor
101 6.81 215 3156 O Lamiales
102 2.25 71 3156 F Lamiaceae
103 0.25 8 3156 G Glechoma
104 0.25 8 3156 S Glechoma hederacea
105 0.25 8 3156 G Mentha
106 0.25 8 3156 S Uncertain taxa
107 1.74 55 3156 G Uncertain taxa
108 0.03 1 3156 F Orobanchaceae
109 0.03 1 3156 G Orobanche
110 0.03 1 3156 S Uncertain taxa
111 4.53 143 3156 F Plantaginaceae
112 4.15 131 3156 G Plantago
113 0.70 22 3156 S Plantago lanceolata
114 3.45 109 3156 S Plantago major
115 0.38 12 3156 G Veronica
116 0.38 12 3156 S Veronica chamaedrys
117 11.63 367 3156 O Malpighiales
118 0.32 10 3156 F Linaceae
119 0.32 10 3156 G Linum
120 0.32 10 3156 S Linum usitatissimum
121 11.31 357 3156 F Salicaceae
122 11.31 357 3156 G Populus
123 11.12 351 3156 S Populus tremula
124 0.19 6 3156 S Uncertain taxa
125 0.10 3 3156 O Malvales
126 0.10 3 3156 F Thymelaeaceae
127 0.10 3 3156 G Daphne
128 0.10 3 3156 S Daphne mezereum
129 0.13 4 3156 O Myrtales
130 0.13 4 3156 F Onagraceae
131 0.13 4 3156 G Uncertain taxa
132 9.73 307 3156 O Poales
133 9.73 307 3156 F Poaceae
134 0.86 27 3156 G Festuca
135 0.86 27 3156 S Festuca rubra
136 3.01 95 3156 G Poa
137 0.10 3 3156 S Poa compressa
138 0.03 1 3156 S Poa pratensis
139 0.03 1 3156 S Poa trivialis
140 2.85 90 3156 S Uncertain taxa
141 5.86 185 3156 G Uncertain taxa
142 4.75 150 3156 O Ranunculales
143 4.75 150 3156 F Ranunculaceae
144 4.75 150 3156 G Ranunculus
145 0.25 8 3156 S Ranunculus muricatus
146 4.47 141 3156 S Ranunculus repens
147 0.03 1 3156 S Uncertain taxa
148 35.30 1114 3156 O Rosales
149 0.22 7 3156 F Cannabaceae
150 0.22 7 3156 G Humulus
151 0.22 7 3156 S Humulus lupulus
152 2.41 76 3156 F Rosaceae
153 0.48 15 3156 G Filipendula
154 0.48 15 3156 S Filipendula ulmaria
155 0.41 13 3156 G Pyrus
156 0.41 13 3156 S Pyrus communis
157 0.03 1 3156 G Rubus
158 0.03 1 3156 S Rubus idaeus
159 1.49 47 3156 G Uncertain taxa
160 32.57 1028 3156 F Ulmaceae
161 32.57 1028 3156 G Ulmus
162 32.57 1028 3156 S Uncertain taxa
163 0.10 3 3156 F Uncertain taxa
164 5.26 166 3156 O Solanales
165 0.38 12 3156 F Convolvulaceae
166 0.38 12 3156 G Convolvulus
167 0.38 12 3156 S Convolvulus arvensis
168 4.75 150 3156 F Solanaceae
169 0.03 1 3156 G Capsicum
170 0.03 1 3156 S Capsicum annuum
171 0.03 1 3156 G Nicandra
172 0.03 1 3156 S Nicandra physalodes
173 4.69 148 3156 G Uncertain taxa
174 0.13 4 3156 F Uncertain taxa
175 0.41 13 3156 O Uncertain taxa