annotate test-data/obiclean_output2.txt @ 2:9ca209477dfd draft default tip

planemo upload for repository https://github.com/Onnodg/Naturalis_NLOOR/tree/main/NLOOR_scripts/process_annotations_tool commit 4017d38cf327c48a6252e488ba792527dae97a70-dirty

Uncertain count per taxonomic level{'K': 0, 'P': 0, 'C': 0, 'O': 13, 'F': 7, 'G': 575, 'S': 1227}
percentage_rooted	number_rooted	total_num	taxon_level	indentificatie
100.00	3156	3156	K	Viridiplantae
100.00	3156	3156	P	  Streptophyta
100.00	3156	3156	C	    Magnoliopsida
1.74	55	3156	O	      Apiales
1.74	55	3156	F	        Apiaceae
1.14	36	3156	G	          Aegopodium
1.14	36	3156	S	            Aegopodium podagraria
0.16	5	3156	G	          Apium
0.16	5	3156	S	            Apium graveolens
0.44	14	3156	G	          Uncertain taxa
4.78	151	3156	O	      Asterales
4.78	151	3156	F	        Asteraceae
0.06	2	3156	G	          Achillea
0.06	2	3156	S	            Achillea millefolium
0.16	5	3156	G	          Artemisia
0.16	5	3156	S	            Uncertain taxa
0.54	17	3156	G	          Cirsium
0.48	15	3156	S	            Cirsium arvense
0.06	2	3156	S	            Cirsium vulgare
0.06	2	3156	G	          Erigeron
0.06	2	3156	S	            Uncertain taxa
0.03	1	3156	G	          Galinsoga
0.03	1	3156	S	            Uncertain taxa
0.03	1	3156	G	          Gnaphalium
0.03	1	3156	S	            Gnaphalium uliginosum
0.03	1	3156	G	          Inula
0.03	1	3156	S	            Inula salicina
0.03	1	3156	G	          Lactuca
0.03	1	3156	S	            Lactuca sativa
0.06	2	3156	G	          Matricaria
0.06	2	3156	S	            Matricaria chamomilla
0.13	4	3156	G	          Tussilago
0.13	4	3156	S	            Tussilago farfara
3.58	113	3156	G	          Uncertain taxa
0.06	2	3156	G	          Xanthium
0.06	2	3156	S	            Xanthium strumarium
0.10	3	3156	O	      Brassicales
0.10	3	3156	F	        Brassicaceae
0.10	3	3156	G	          Cardamine
0.10	3	3156	S	            Uncertain taxa
3.26	103	3156	O	      Caryophyllales
3.26	103	3156	F	        Polygonaceae
0.92	29	3156	G	          Polygonum
0.92	29	3156	S	            Polygonum aviculare
2.28	72	3156	G	          Rumex
2.28	72	3156	S	            Uncertain taxa
0.06	2	3156	G	          Uncertain taxa
0.03	1	3156	O	      Cornales
0.03	1	3156	F	        Cornaceae
0.03	1	3156	G	          Cornus
0.03	1	3156	S	            Cornus mas
0.13	4	3156	O	      Dipsacales
0.13	4	3156	F	        Adoxaceae
0.13	4	3156	G	          Sambucus
0.13	4	3156	S	            Uncertain taxa
0.19	6	3156	O	      Ericales
0.03	1	3156	F	        Ericaceae
0.03	1	3156	G	          Calluna
0.03	1	3156	S	            Calluna vulgaris
0.16	5	3156	F	        Primulaceae
0.16	5	3156	G	          Lysimachia
0.03	1	3156	S	            Lysimachia thyrsiflora
0.13	4	3156	S	            Lysimachia vulgaris
4.15	131	3156	O	      Fabales
4.15	131	3156	F	        Fabaceae
0.48	15	3156	G	          Lathyrus
0.48	15	3156	S	            Lathyrus pratensis
0.03	1	3156	G	          Pisum
0.03	1	3156	S	            Pisum sativum
3.36	106	3156	G	          Trifolium
0.10	3	3156	S	            Trifolium arvense
2.76	87	3156	S	            Trifolium medium
0.32	10	3156	S	            Trifolium repens
0.19	6	3156	S	            Uncertain taxa
0.03	1	3156	G	          Uncertain taxa
0.25	8	3156	G	          Vicia
0.25	8	3156	S	            Vicia faba
11.44	361	3156	O	      Fagales
9.19	290	3156	F	        Betulaceae
5.77	182	3156	G	          Alnus
5.77	182	3156	S	            Alnus incana
0.51	16	3156	G	          Betula
0.51	16	3156	S	            Betula pendula
2.72	86	3156	G	          Carpinus
2.72	86	3156	S	            Carpinus betulus
0.19	6	3156	G	          Uncertain taxa
2.15	68	3156	F	        Fagaceae
0.35	11	3156	G	          Fagus
0.35	11	3156	S	            Fagus sylvatica
1.81	57	3156	G	          Quercus
1.81	57	3156	S	            Quercus rubra
0.10	3	3156	F	        Juglandaceae
0.10	3	3156	G	          Juglans
0.10	3	3156	S	            Juglans regia
0.06	2	3156	O	      Gentianales
0.06	2	3156	F	        Apocynaceae
0.06	2	3156	G	          Vinca
0.06	2	3156	S	            Vinca minor
6.81	215	3156	O	      Lamiales
2.25	71	3156	F	        Lamiaceae
0.25	8	3156	G	          Glechoma
0.25	8	3156	S	            Glechoma hederacea
0.25	8	3156	G	          Mentha
0.25	8	3156	S	            Uncertain taxa
1.74	55	3156	G	          Uncertain taxa
0.03	1	3156	F	        Orobanchaceae
0.03	1	3156	G	          Orobanche
0.03	1	3156	S	            Uncertain taxa
4.53	143	3156	F	        Plantaginaceae
4.15	131	3156	G	          Plantago
0.70	22	3156	S	            Plantago lanceolata
3.45	109	3156	S	            Plantago major
0.38	12	3156	G	          Veronica
0.38	12	3156	S	            Veronica chamaedrys
11.63	367	3156	O	      Malpighiales
0.32	10	3156	F	        Linaceae
0.32	10	3156	G	          Linum
0.32	10	3156	S	            Linum usitatissimum
11.31	357	3156	F	        Salicaceae
11.31	357	3156	G	          Populus
11.12	351	3156	S	            Populus tremula
0.19	6	3156	S	            Uncertain taxa
0.10	3	3156	O	      Malvales
0.10	3	3156	F	        Thymelaeaceae
0.10	3	3156	G	          Daphne
0.10	3	3156	S	            Daphne mezereum
0.13	4	3156	O	      Myrtales
0.13	4	3156	F	        Onagraceae
0.13	4	3156	G	          Uncertain taxa
9.73	307	3156	O	      Poales
9.73	307	3156	F	        Poaceae
0.86	27	3156	G	          Festuca
0.86	27	3156	S	            Festuca rubra
3.01	95	3156	G	          Poa
0.10	3	3156	S	            Poa compressa
0.03	1	3156	S	            Poa pratensis
0.03	1	3156	S	            Poa trivialis
2.85	90	3156	S	            Uncertain taxa
5.86	185	3156	G	          Uncertain taxa
4.75	150	3156	O	      Ranunculales
4.75	150	3156	F	        Ranunculaceae
4.75	150	3156	G	          Ranunculus
0.25	8	3156	S	            Ranunculus muricatus
4.47	141	3156	S	            Ranunculus repens
0.03	1	3156	S	            Uncertain taxa
35.30	1114	3156	O	      Rosales
0.22	7	3156	F	        Cannabaceae
0.22	7	3156	G	          Humulus
0.22	7	3156	S	            Humulus lupulus
2.41	76	3156	F	        Rosaceae
0.48	15	3156	G	          Filipendula
0.48	15	3156	S	            Filipendula ulmaria
0.41	13	3156	G	          Pyrus
0.41	13	3156	S	            Pyrus communis
0.03	1	3156	G	          Rubus
0.03	1	3156	S	            Rubus idaeus
1.49	47	3156	G	          Uncertain taxa
32.57	1028	3156	F	        Ulmaceae
32.57	1028	3156	G	          Ulmus
32.57	1028	3156	S	            Uncertain taxa
0.10	3	3156	F	        Uncertain taxa
5.26	166	3156	O	      Solanales
0.38	12	3156	F	        Convolvulaceae
0.38	12	3156	G	          Convolvulus
0.38	12	3156	S	            Convolvulus arvensis
4.75	150	3156	F	        Solanaceae
0.03	1	3156	G	          Capsicum
0.03	1	3156	S	            Capsicum annuum
0.03	1	3156	G	          Nicandra
0.03	1	3156	S	            Nicandra physalodes
4.69	148	3156	G	          Uncertain taxa
0.13	4	3156	F	        Uncertain taxa
0.41	13	3156	O	      Uncertain taxa