annotate test-data/test1_logs.txt @ 4:e64af72e1b8f draft default tip

planemo upload for repository https://github.com/Onnodg/Naturalis_NLOOR/tree/main/NLOOR_scripts/process_clusters_tool commit 4017d38cf327c48a6252e488ba792527dae97a70-dirty

=== CD-HIT cluster processing started ===
cluster_file: provided
annotation_file: provided
=== PARAMETERS ===
output_taxa_clusters: True
output_taxa_processed: True
simi_plot_y_min: 95.0
simi_plot_y_max: 100.0
uncertain_taxa_use_ratio: 0.5
min_to_split: 0.45
min_count_to_split: 10
min_cluster_support: 1
=== PARAMETERS END===
Loaded 810 annotated headers
Parsed 514 clusters
Similarity text summary written succesfully
Similarity mean = 99.70, std = 0.63
Similarity plot written succesfully
Count summary written succesfully
TOTAL annotated=51245, unannotated=15395, total=66640
Raw taxa per cluster written succesfully
Processed taxa (split clusters) written succesfully
=== SUMMARY ===
Clusters parsed: 514
Total reads: 66640
Annotated reads: 51245
Unannotated reads: 15395
Clusters with annotations: 63
Clusters fully unannotated: 451
Minimum cluster support for processed taxa: 1
=== TAXA SUMMARY (top 10) ===
Viridiplantae / Streptophyta / Magnoliopsida / Rosales / Cannabaceae / Humulus / Uncertain taxa: 47442 reads
Viridiplantae / Streptophyta / Magnoliopsida / Uncertain taxa / Uncertain taxa / Uncertain taxa / Uncertain taxa: 543 reads
Viridiplantae / Streptophyta / Magnoliopsida / Malvales / Malvaceae / Tilia / Uncertain taxa: 419 reads
Viridiplantae / Streptophyta / Magnoliopsida / Rosales / Rosaceae / Uncertain taxa / Uncertain taxa: 382 reads
Viridiplantae / Streptophyta / Magnoliopsida / Fagales / Betulaceae / Alnus / Uncertain taxa: 301 reads
Viridiplantae / Streptophyta / Magnoliopsida / Malpighiales / Salicaceae / Uncertain taxa / Uncertain taxa: 240 reads
Uncertain taxa / Uncertain taxa / Uncertain taxa / Uncertain taxa / Uncertain taxa / Uncertain taxa / Uncertain taxa: 227 reads
Viridiplantae / Streptophyta / Magnoliopsida / Malpighiales / Salicaceae / Populus / Uncertain taxa: 222 reads
Viridiplantae / Streptophyta / Magnoliopsida / Poales / Poaceae / Uncertain taxa / Uncertain taxa: 221 reads
Viridiplantae / Streptophyta / Magnoliopsida / Fagales / Fagaceae / Castanea / Uncertain taxa: 204 reads
Total unique taxa: 44
=== SIMILARITY SUMMARY ===
Mean similarity: 99.70
Std similarity: 0.63
=== CD-HIT cluster processing finished ===