Mercurial > repos > onnodg > cdhit_analysis
changeset 3:c6981ea453ae draft default tip
planemo upload for repository https://github.com/Onnodg/Naturalis_NLOOR/tree/main/NLOOR_scripts/process_clusters_tool commit ef31054ae26e19eff2f1b1f6c7979e39c47c0d5b-dirty
| author | onnodg |
|---|---|
| date | Fri, 24 Oct 2025 09:38:24 +0000 |
| parents | 706b7acdb230 |
| children | |
| files | cdhit_analysis.py cdhit_analysis.xml test-data/~$header_anno_excel.xlsx test-data/~$test_2processed.xlsx test-data/~$test_2taxa_out.xlsx |
| diffstat | 5 files changed, 1 insertions(+), 4 deletions(-) [+] |
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--- a/cdhit_analysis.py Tue Oct 21 07:54:21 2025 +0000 +++ b/cdhit_analysis.py Fri Oct 24 09:38:24 2025 +0000 @@ -10,9 +10,6 @@ 2. Process each cluster to extract similarity, taxa, and e-value information. 3. Aggregate results across clusters. 4. Generate requested outputs: text summaries, plots, and Excel reports. - - -Note: Uses a non-interactive matplotlib backend (Agg) for compatibility with Galaxy. """ import argparse
--- a/cdhit_analysis.xml Tue Oct 21 07:54:21 2025 +0000 +++ b/cdhit_analysis.xml Fri Oct 24 09:38:24 2025 +0000 @@ -1,4 +1,4 @@ -<tool id="cdhit_cluster_analysis" name="CD-HIT Cluster Analysis" version="1.0.1"> +<tool id="cdhit_cluster_analysis" name="CD-HIT Cluster Analysis" version="1.0.2"> <description>Analyze CD-HIT clustering results with taxonomic annotation</description> <requirements>