view concat_cov_and_iupac_results.xml @ 1:733edda2eb48 draft default tip

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<tool id="concat_cov_iupac" name="Concatening cov and iupac" version="1.2">
  <description>
    Concatenate coverage stats (get_coverage_stats) and iupac percentage results (get_iupac_percentage)
  </description>
  <stdio>
    <exit_code range="1:" />
  </stdio>
  <command><![CDATA[
    python '$__tool_directory__/concat_cov_and_iupac_results.py' 
      -c "$covfile" 
      -i "$iupacfile" 
      -o "$output"
  ]]></command>
  <inputs>
    <param name="covfile" type="data" format="txt" label="Coverage statistics file" help="Output file from get_coverage_stats"/>
    <param name="iupacfile" type="data" format="txt" label="IUPAC percentage file" help="Output file from get_iupac_percentage"/>
  </inputs>
  <outputs>
    <data format="txt" name="output" label="${tool.name} on ${on_string}"/>
  </outputs>
  <help>
  <![CDATA[

Homemade script concatenate coverage statistics file and iupac percentage file.

  ]]>
  </help>
</tool>