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1 <tool id="concat_cov_iupac" name="Concatening cov and iupac" version="1.2">
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2 <description>
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3 Concatenate coverage stats (get_coverage_stats) and iupac percentage results (get_iupac_percentage)
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4 </description>
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5 <stdio>
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6 <exit_code range="1:" />
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7 </stdio>
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8 <command><![CDATA[
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9 python '$__tool_directory__/concat_cov_and_iupac_results.py'
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10 -c "$covfile"
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11 -i "$iupacfile"
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12 -o "$output"
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13 ]]></command>
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14 <inputs>
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15 <param name="covfile" type="data" format="txt" label="Coverage statistics file" help="Output file from get_coverage_stats"/>
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16 <param name="iupacfile" type="data" format="txt" label="IUPAC percentage file" help="Output file from get_iupac_percentage"/>
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17 </inputs>
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18 <outputs>
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19 <data format="txt" name="output" label="${tool.name} on ${on_string}"/>
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20 </outputs>
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21 <help>
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22 <![CDATA[
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23
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24 Homemade script concatenate coverage statistics file and iupac percentage file.
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25
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26 ]]>
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27 </help>
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28 </tool>
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