Mercurial > repos > p.lucas > concat_cov_and_iupac

changeset 0:4fdf1283e153 draft

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Uploaded
author p.lucas
date Thu, 13 Jun 2024 14:50:44 +0000
parents
children 733edda2eb48
files concat_cov_and_iupac_results.xml
diffstat 1 files changed, 28 insertions(+), 0 deletions(-) [+]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/concat_cov_and_iupac_results.xml	Thu Jun 13 14:50:44 2024 +0000
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+<tool id="concat_cov_iupac" name="Concatening cov and iupac" version="1.2">
+  <description>
+    Concatenate coverage stats (get_coverage_stats) and iupac percentage results (get_iupac_percentage)
+  </description>
+  <stdio>
+    <exit_code range="1:" />
+  </stdio>
+  <command><![CDATA[
+    python '$__tool_directory__/concat_cov_and_iupac_results.py' 
+      -c "$covfile" 
+      -i "$iupacfile" 
+      -o "$output"
+  ]]></command>
+  <inputs>
+    <param name="covfile" type="data" format="txt" label="Coverage statistics file" help="Output file from get_coverage_stats"/>
+    <param name="iupacfile" type="data" format="txt" label="IUPAC percentage file" help="Output file from get_iupac_percentage"/>
+  </inputs>
+  <outputs>
+    <data format="txt" name="output" label="${tool.name} on ${on_string}"/>
+  </outputs>
+  <help>
+  <![CDATA[
+
+Homemade script concatenate coverage statistics file and iupac percentage file.
+
+  ]]>
+  </help>
+</tool>