Mercurial > repos > p.lucas > diamond_using_binary

changeset 1:1dedbad953a3 draft

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Update xml
author p.lucas
date Tue, 28 May 2024 12:48:00 +0000
parents efb5776c8c54
children f7ebcfa91ab4
files diamond.xml
diffstat 1 files changed, 2 insertions(+), 6 deletions(-) [+]
line wrap: on
line diff
--- a/diamond.xml	Tue May 28 12:21:22 2024 +0000
+++ b/diamond.xml	Tue May 28 12:48:00 2024 +0000
@@ -3,10 +3,6 @@
     <macros>
         <import>macros.xml</import>
     </macros>
-    <xrefs>
-        <xref type="bio.tools">diamond</xref>
-    </xrefs>
-    <expand macro="requirements" />
     <expand macro="stdio" />
     <expand macro="version_command" />
     <command detect_errors="aggressive">
@@ -20,11 +16,11 @@
 
     &&
 
-    $__tool_directory__/diamond
+    /usr/bin/diamond
         $method_cond.method_select
         --quiet
         --threads "\${GALAXY_SLOTS:-12}"
-        --db /nfs/data/db/nr_blast/nr
+        --db ./database
         --query '$query'
         #if $method_cond.method_select == "blastx"
           --query-gencode '$method_cond.query_gencode'