Mercurial > repos > p.lucas > fasta_to_fastq
changeset 0:3c99ff6e67ca draft
Uploaded
| author | p.lucas |
|---|---|
| date | Tue, 23 Jul 2024 14:28:39 +0000 |
| parents | |
| children | 60e768cf5101 |
| files | fasta_to_fastq.xml |
| diffstat | 1 files changed, 24 insertions(+), 0 deletions(-) [+] |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/fasta_to_fastq.xml Tue Jul 23 14:28:39 2024 +0000 @@ -0,0 +1,24 @@ +<tool id="fasta_to_fastq" name="FASTA to FASTQ" version="1.0"> + <description>Convert a FASTA file to a FASTQ file</description> + <requirements> + <requirement type="package" version="1.79">biopython</requirement> + </requirements> + <command><![CDATA[ + python '$__tool_directory__/fasta2fastq.py' + -i "$inputfile" + -s "$score" + -o "$output" + ]]> + </command> + <inputs> + <param type="data" name="inputfile" format="fasta" label="Input fasta file"/> + <param type="integer" name="score" label="Quality score" value="40" help="Quality score you wanted for each base in all reads. (default: 40)"/> + </inputs> + <outputs> + <data name="output" format="fastq" label="${tool.name} on ${on_string}"/> + </outputs> + <help> <![CDATA[ + Takes a FASTA file and converts it to a FASTQ file by adding a static quality score. The default quality score for each base in all reads is 40. + ]]> + </help> +</tool> \ No newline at end of file