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+# galaxy_selenzyme
+
+Creating a tool within Galaxy to run Selenzyme.
+
+See:
+
+* Tutorial to create a Galaxy tool: https://galaxyproject.org/admin/tools/add-tool-tutorial/
+* How to install it in the Galaxy container: https://github.com/bgruening/docker-galaxy-stable
+* Example for Uniprot: https://toolshed.g2.bx.psu.edu/repository?repository_id=c8774310981b07c5
+
+Plan:
+- [x] Create a basic command line tool using Python `requests` that submits a the reaction SMILES and gets the predicted sequences.
+- [x] Create a Galaxy Tool XML file.
+- [x] Check that the Galaxy container has `requests` installed, otherwise add to the `docker-compose` file.
+- [x] Mount the folder with the tool in the container.
+- [x] Install the tool in Galaxy.
+- [ ] Create a tool using Galaxy XML that post JSON request and receives a JSON response (no local tool running in the Galaxy server).
+- [ ] Submit the purely XML tool to the [Galaxy Tool Shed](https://toolshed.g2.bx.psu.edu/).
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