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annotate README.md @ 0:ac027c9ace4d draft

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author pablocarb
date Mon, 29 Apr 2019 09:49:36 -0400
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1 # galaxy_selenzyme
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3 Creating a tool within Galaxy to run Selenzyme.
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5 See:
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7 * Tutorial to create a Galaxy tool: https://galaxyproject.org/admin/tools/add-tool-tutorial/
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8 * How to install it in the Galaxy container: https://github.com/bgruening/docker-galaxy-stable
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9 * Example for Uniprot: https://toolshed.g2.bx.psu.edu/repository?repository_id=c8774310981b07c5
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11 Plan:
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12 - [x] Create a basic command line tool using Python `requests` that submits a the reaction SMILES and gets the predicted sequences.
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13 - [x] Create a Galaxy Tool XML file.
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14 - [x] Check that the Galaxy container has `requests` installed, otherwise add to the `docker-compose` file.
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15 - [x] Mount the folder with the tool in the container.
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16 - [x] Install the tool in Galaxy.
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17 - [ ] Create a tool using Galaxy XML that post JSON request and receives a JSON response (no local tool running in the Galaxy server).
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18 - [ ] Submit the purely XML tool to the [Galaxy Tool Shed](https://toolshed.g2.bx.psu.edu/).