Mercurial > repos > pablocarb > synbiodesign
changeset 1:b0b7deebb71e draft
planemo upload commit 9e24fae395aeaca30c5bcdef80a21b7decb04042-dirty
| author | pablocarb |
|---|---|
| date | Mon, 29 Apr 2019 10:53:09 -0400 |
| parents | ac027c9ace4d |
| children | 856bd14e6e96 |
| files | maketool.sh selenzyme.xml |
| diffstat | 2 files changed, 10 insertions(+), 4 deletions(-) [+] |
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--- a/maketool.sh Mon Apr 29 09:49:36 2019 -0400 +++ b/maketool.sh Mon Apr 29 10:53:09 2019 -0400 @@ -5,17 +5,19 @@ # --example_output out.csv \ # --example_command 'python $__tool_directory__/toolSelenzyme.py $input1 $output1 -server $server' \ +# Generate tool backbone (additional params need to be entered manually planemo tool_init --force \ --id 'selenzyme' \ --name 'Selenzyme' \ --description 'enzyme sequence selection from reaction template' \ --requirement requests@2 \ - --example_command 'python $__tool_directory__/toolSelenzyme.py $input1 $output1' \ + --example_command 'python $__tool_directory__/toolSelenzyme.py $input1 $output1 -server $server' \ --example_input 'reaction.csv' \ --example_output 'out.csv' \ --doi 10.1093/bioinformatics/bty065 \ --help_from_command 'python3 toolSelenzyme.py -h' - + +# Init shed repository planemo shed_init . --force \ --name synbiodesign \ --owner pablocarb \ @@ -23,9 +25,13 @@ --category 'Systems Biology' \ --homepage_url 'https://github.com/pablocarb/galaxysynbiodesign' +# Create repository in the toolshed planemo shed_create \ --shed_target toolshed \ --shed_key_from_env TOOLSHED +# Update repository in the toolshed planemo shed_update \ - --check_diff --shed_target toolshed + --check_diff --shed_target toolshed \ + --shed_key_from_env TOOLSHED +
--- a/selenzyme.xml Mon Apr 29 09:49:36 2019 -0400 +++ b/selenzyme.xml Mon Apr 29 10:53:09 2019 -0400 @@ -4,7 +4,7 @@ <requirement type="package" version="2">requests</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ - python $__tool_directory__/toolSelenzyme.py $input1 $output1 + python $__tool_directory__/toolSelenzyme.py $input1 $output1 -server $server ]]></command> <inputs> <param type="data" name="input1" format="csv" />