Mercurial > repos > padge > clipkit
comparison clipkit_repo/tests/unit/test_warnings.py @ 0:49b058e85902 draft
"planemo upload for repository https://github.com/jlsteenwyk/clipkit commit cbe1e8577ecb1a46709034a40dff36052e876e7a-dirty"
| author | padge |
|---|---|
| date | Fri, 25 Mar 2022 13:04:31 +0000 |
| parents | |
| children |
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| -1:000000000000 | 0:49b058e85902 |
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| 1 import pytest | |
| 2 | |
| 3 from clipkit.warnings import check_if_all_sites_were_trimmed, check_if_entry_contains_only_gaps | |
| 4 | |
| 5 | |
| 6 class TestWarnings(object): | |
| 7 def test_all_sites_trimmed(self, mocker): | |
| 8 mocked_warning = mocker.patch('clipkit.warnings.logger.warning') | |
| 9 keepD = dict(some_id="") | |
| 10 check_if_all_sites_were_trimmed(keepD) | |
| 11 mocked_warning.assert_called_once_with('WARNING: All sites trimmed from alignment. Please use different parameters.') | |
| 12 | |
| 13 def test_gaps_only(self, mocker): | |
| 14 mocked_warning = mocker.patch('clipkit.warnings.logger.warning') | |
| 15 keepD = dict(some_id="-") | |
| 16 check_if_entry_contains_only_gaps(keepD) | |
| 17 mocked_warning.assert_called_once_with('''WARNING: header id 'some_id' contains only gaps''') |