view clipkit_repo/tests/unit/test_warnings.py @ 0:49b058e85902 draft

"planemo upload for repository https://github.com/jlsteenwyk/clipkit commit cbe1e8577ecb1a46709034a40dff36052e876e7a-dirty"

import pytest

from clipkit.warnings import check_if_all_sites_were_trimmed, check_if_entry_contains_only_gaps


class TestWarnings(object):
    def test_all_sites_trimmed(self, mocker):
        mocked_warning = mocker.patch('clipkit.warnings.logger.warning')
        keepD = dict(some_id="")
        check_if_all_sites_were_trimmed(keepD)
        mocked_warning.assert_called_once_with('WARNING: All sites trimmed from alignment. Please use different parameters.')

    def test_gaps_only(self, mocker):
        mocked_warning = mocker.patch('clipkit.warnings.logger.warning')
        keepD = dict(some_id="-")
        check_if_entry_contains_only_gaps(keepD)
        mocked_warning.assert_called_once_with('''WARNING: header id 'some_id' contains only gaps''')