comparison trimal_repo/dataset/example.088.AA.strNOG.ENOG411BSXF.fasta @ 0:b15a3147e604 draft

"planemo upload for repository https://github.com/inab/trimal commit cbe1e8577ecb1a46709034a40dff36052e876e7a-dirty"
author padge
date Fri, 25 Mar 2022 17:10:43 +0000 (2022-03-25)
parents
children
comparison
equal deleted inserted replaced
-1:000000000000 0:b15a3147e604
1 >88036.EFJ36971
2 --------------------------------------------------
3 --------------------------------------------------
4 --------------------------------------------------
5 ----MTVKRRNGGRNKHGRGHVDPIRCSNCGRCVPKDKAVKRFLVRNIVE
6 QAAVRDVQDACVYESYTLPKLYGKMQYCVSCAIHSHVVRVRSREKRRDRN
7 PPVRPFQRRKDFVP------R-PGGPG---AA---G---GPGGPG-----
8 A---------PRPPPPR---
9 >88036.EFJ33618
10 --------------------------------------------------
11 --------------------------------------------------
12 --------------------------------------------------
13 ----MTVKRRNGGRNKHGRGHVDPIRCSNCGRCVPKDKAVKRFLVRNIVE
14 QAAVRDVQDACVYESYTLPKLYGKMQYCVSCAIHSHVVRVRSREKRRDRN
15 PPVRPFQRRKDFVP------R-PGGPG---AA---G---GPGGPG-----
16 A---------PRPPPPR---
17 >3218.PP1S169_19V6.1
18 --------------------------------------------------
19 --------------------------------------------------
20 --------------------------------------------------
21 ----MTVKRRSGGRNKHGRGHVNPIRCSNCGRCVPKDKAVKRFLVRNIVE
22 QAAVRDVQEACVYDGYVLPKLYAKMQYCISCAIHSHVVRVRSREARRIRE
23 PPQR-FR-RKEDGP-----PRVQGAPG---A--------K----------
24 -----------------A--
25 >3218.PP1S375_10V6.1
26 --------------------------------------------------
27 --------------------------------------------------
28 --------------------------------------------------
29 ----MTVKRRSGGRNKHGRGHVNPIRCSNCGRCVPKDKAVKRFLVRNIVE
30 QAAVRDVQEACVYDGYVLPKLYAKMQYCISCAIHSHVVRVRSREARRVRE
31 PPQR-FR-RKEDGP-----PRAPGAPG---A--------RPGA-------
32 -------------PGAKP--
33 >3218.PP1S270_77V6.1
34 --------------------------------------------------
35 --------------------------------------------------
36 --------------------------------------------------
37 ----MTVKRRSGGRNKHGRGHVNPIRCSNCGRCVPKDKAVKRFLVRNIVE
38 QAAVRDVQEACVYDGYVLPKLYAKMQYCISCAIHSHVVRVRSREARRIRE
39 PPQR-FR-RKEDGP-----PRAPGAPG---A--------RPGA-------
40 -------------AVAKS--
41 >4577.GRMZM5G827266_P02
42 --------------------------------------------------
43 --------------------------------------------------
44 --------------------------------------------------
45 ----MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVE
46 QAAIRDVQEACVYDGYVLPKLYAKVHHCVSCAIHAHIVRVRSREKRRDRK
47 PPER-FR-RREDRPA------G-GQ-----GGPRPG-PGAAAT------A
48 P--------APAPVAARP--
49 >4558.Sb09g023400.1
50 --------------------------------------------------
51 --------------------------------------------------
52 --------------------------------------------------
53 ----MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVE
54 QAAIRDVQEACVHDGYVLPKLYAKVHHCVSCAIHAHIVRVRSREKRRDRK
55 PPER-FR-RREDRPA------G-GQ-----GGPRPG-PGPAGA------A
56 P--------APAPVAARP--
57 >4577.GRMZM2G129015_P01
58 --------------------------------------------------
59 --------------------------------------------------
60 --------------------------------------------------
61 ----MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFLVRNIVE
62 QAAVRDVQEACVHDGYVLPKLYAKVHHCVSCAIHAHIVRVRSRENRRNRE
63 PPQR-FR-RRDDGP-----R-P-GQ-----GP---P---RPGAAA-TAAP
64 P-----------AAAPRA--
65 >4555.Si037993m
66 --------------------------------------------------
67 --------------------------------------------------
68 --------------------------------------------------
69 ----MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFLVRNIVE
70 QAAVRDVQEACVHDGYVLPKLYAKVHHCVSCAIHAHIVRVRSRENRRNRE
71 PPQR-FR-RRDDGP-----R-P-GQ-----GA---P---RPGGGAPPAAA
72 P-----------AAAPRT--
73 >4558.Sb01g003630.1
74 --------------------------------------------------
75 --------------------------------------------------
76 --------------------------------------------------
77 ----MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFLVRNIVE
78 QAAVRDVQEACVHDGYVLPKLYAKVHHCVSCAIHAHIVRVRSRENRRNRE
79 PPQR-FR-RRDDGP-----R-P-GQ-----GP---P---RPGGAA-PAAA
80 P-----------AAAPRT--
81 >4577.GRMZM5G899149_P01
82 --------------------------------------------------
83 --------------------------------------------------
84 --------------------------------------------------
85 ----MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFLVRNIVE
86 QAAVRDVQEACVHDGYVLPKLYAKVHHCVSCAIHAHIVRVRSRENRRNRE
87 PPQR-FR-RRDDGP-----R-P-GQ-----GP---P---RPGGAA-PAAA
88 A-----------AAAPRT--
89 >15368.BRADI1G04070.1
90 --------------------------------------------------
91 --------------------------------------------------
92 --------------------------------------------------
93 ----MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFLVRNIVE
94 QAAVRDVQEACVHDGYILPKLYAKVHHCVSCAIHAHIVRVRSRENRRNRE
95 PPQR-FR-RREDGP-----R-P-GQG----GP---P---RAGGPGGPGGA
96 PPVPG---A--GAPAPRV--
97 >4513.MLOC_69944.1
98 --------------------------------------------------
99 --------------------------------------------------
100 --------------------------------------------------
101 ----MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFLVRNIVE
102 QAAVRDVQEACVHDGYVLPKLYAKVHHCVSCAIHAHIVRVRSRENRRNRE
103 PPQR-FR-RRDDGP-----R-P-GQG----GP---P---RAGGPGGPGGA
104 PAGAG---AVPGAPAPRALI
105 >4533.OB05G27750.1
106 --------------------------------------------------
107 --------------------------------------------------
108 --------------------------------------------------
109 ----MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVE
110 QAAIRDVQEACVHDGYVLPKLYAKVHHCVSCAIHAHIVRVRSRENRRDRR
111 PPER-FR-RREDRPS--GPR-P-GGPG---GP---G---APAA------G
112 P--------GGAPNVARP--
113 >15368.BRADI2G53590.1
114 --------------------------------------------------
115 --------------------------------------------------
116 --------------------------------------------------
117 ----MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVE
118 QAAIRDLQEACVYDGYVLPKLYAKVHHCVSCAIHAHIVRVRSRTNRRNRA
119 PPER-FR-RREDRPGGQGPR-P-GAAG---GA---PGAGAPGG------A
120 P--GGFIPGAPAPNVAST--
121 >39947.LOC_Os01g60790.1
122 --------------------------------------------------
123 --------------------------------------------------
124 --------------------------------------------------
125 ----MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVE
126 QAAIRDVQEACVHDGYVLPKLYAKVHHCVSCAIHAHIVRVRSRENRRDRR
127 PPER-FR-RREDRPQ--GPR-P-G--G---GA---P---APGG------A
128 A--------APAPNVART--
129 >39946.BGIOSGA004709-PA
130 --------------------------------------------------
131 --------------------------------------------------
132 --------------------------------------------------
133 ----MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVE
134 QAAIRDVQEACVHDGYVLPKLYAKVHHCVSCAIHAHIVRVRSRENRRDRR
135 PPER-FR-RREDRPQ--GPR-P-G--G---GA---P---APGG------A
136 A--------APAPNVART--
137 >4538.ORGLA01G0293400.1
138 --------------------------------------------------
139 --------------------------------------------------
140 --------------------------------------------------
141 ----MTFKRRNGGRNKHGRGHVKYIRCSNCAKCCPKDKAIKRFQVRNIVE
142 QAAIRDVQEACVHDGYVLPKLYAKVHHCVSCAIHAHIVRVRSRENRRDRR
143 PPER-FR-RREDRPQ--GPR-P-G--G---GA---P---APGG------A
144 A--------APAPNVART--
145 >4533.OB01G44280.1
146 --------------------------------------------------
147 --------------------------------------------------
148 ------------------------------------------------VL
149 SASAQTFKRRNTGRNKHGRGHVNYIRCSNCAKCCPKDKAIKRFQVRNIVE
150 QAAIRDVQEACVHDGYVLPKLYAKVHHCVSCAIHAHIVRVRSRENRRDRR
151 PPER-FR-RREDRPQ--GPR-P-GG-----GA---P---APG--------
152 A--------APAPNVART--
153 >3711.Bra003237.1-P
154 MEQAPPPANVVESITSFQLHRNLNLPPGYGFHASDAQLLQLFLGPFVDER
155 ELKTCPIHNITGDVYSSSPDVLTGAYEHDGEDKWFFFCTNKYDDDVTSRA
156 GRVIVGGGGEWVKMGPSKKLFANNTLLGFKRTQDFYVQGMDLSYWRMEEL
157 SLRAKTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVE
158 QAAIRDVQEASVYDGYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRT
159 PPPR-FVRRKEDAPK------P-GQPG---QA---P---RPAGG-A----
160 -P-A----------AARA--
161 >3711.Bra000193.1-P
162 --------------------------------------------------
163 --------------------------------------------------
164 --------------------------------------------------
165 ----MTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVE
166 QAAIRDVQEASVYDGYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRT
167 PPPR-FVRRKEDAPK------P-GQPG---QA---P---RPAGA-A----
168 ---A----------APRA--
169 >3711.Bra007238.1-P
170 --------------------------------------------------
171 --------------------------------------------------
172 --------------------------------------------------
173 MASLPTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFLVRNIVE
174 QAAIRDVQEASVYDGYTLPKLYAKMQYCVSCAIHSHVVRVRSRTNRRVRT
175 PPPR-FARRKEDTPK------P-GQPG---QA---P---RPAGG-A-P--
176 ---A----------APRA--
177 >3702.AT2G40590.1
178 --------------------------------------------------
179 --------------------------------------------------
180 --------------------------------------------------
181 ----MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVE
182 QAAIRDVQEASVYEGYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRT
183 PPPR-FTRRKEDTPK------P-GQPG---QA---P---RPAGP-GAAA-
184 --------------APRV--
185 >3702.AT2G40510.1
186 --------------------------------------------------
187 --------------------------------------------------
188 --------------------------------------------------
189 ----MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVE
190 QAAIRDVQEASVYEGYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRT
191 PPPR-FARRKEDTPK------P-GQPG---QA---P---RPAGP-GAAA-
192 -A-A----------APRV--
193 >3702.AT3G56340.1
194 --------------------------------------------------
195 --------------------------------------------------
196 --------------------------------------------------
197 ----MTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVE
198 QAAIRDVQEASVYEGYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRT
199 PPPR-FARRKEDTPK------P-AQPG---QA---P---RPAGG-A----
200 -P-A----------APRA--
201 >59689.fgenesh2_kg.5__2066__AT3G56340.1
202 --------------------------------------------------
203 --------------------------------------------------
204 --------------------------------------------------
205 ----MTFKRRNGGRNKHNRGHVNPIRCSNCGKCCPKDKAIKRFIVRNIVE
206 QAAIRDVQEASVYEAYTLPKLYAKMQYCVSCAIHSHVVRVRSRTNRRVRT
207 PPPR-FARRKEDTPK------P-GQPG---QA---P---RPAGG-A-P--
208 ---A----------APRA--
209 >59689.Al_scaffold_0004_2658
210 --------------------------------------------------
211 --------------------------------------------------
212 --------------------------------------------------
213 ----MTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVE
214 QAAIRDVQEASVYEAYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRT
215 PPPR-FARRKEDTPK------P-GQPG---QA---P---RPAGP-GP---
216 -A-A----------APRV--
217 >59689.fgenesh2_kg.4__2176__AT2G40590.1
218 --------------------------------------------------
219 --------------------------------------------------
220 --------------------------------------------------
221 ----MTFKRRNGGRNKHNRGHVKPIRCSNCGKCCPKDKAIKRFIVRNIVE
222 QAAIRDVQEASVYEAYTLPKLYAKTQYCVSCAIHSHVVRVRSRTNRRVRT
223 PPPR-FARRKEDTPK------P-GQPG---QA---P---RPAGP-GA---
224 -A-A----------APRA--
225 >4641.GSMUA_Achr10P13150_001
226 --------------------------------------------------
227 --------------------------------------------------
228 ----------------------MWESDG-----------SDQKNRLVGSS
229 DAPKMTFKRRNGGRNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVE
230 QAAVRDVQEACAYDGYMLPKLYIKMQYCVSCAIHSKVVRVRSRTDRRNRE
231 PPQR-YR-RRDDLAR------P----G---QG---P---RPVGA-AT---
232 ---N----------PPRP--
233 >4113.PGSC0003DMT400065105
234 --------------------------------------------------
235 --------------------------------------------------
236 --------------------------------------------------
237 ----MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVE
238 QAAVRDVQEACAFELYTLPKLYLKMQYCVSCAIHSKVVRVRSRTDRRVRE
239 PPQR-FRRPRDDLPK------A----G---QA---P---RPAGG-AP---
240 -P-A----------AART--
241 >4081.Solyc04g008810.2.1
242 --------------------------------------------------
243 --------------------------------------------------
244 --------------------------------------------------
245 ----MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVE
246 QAAVRDVQEACAFELYTLPKLYLKMQYCVSCAIHSKVVRVRSRTDRRVRE
247 PPQR-FRRPRDDLPK------A----G---QA---P---RPAGG-AP---
248 -P-A----------AART--
249 >4113.PGSC0003DMT400053000
250 --------------------------------------------------
251 --------------------------------------------------
252 --------------------------------------------------
253 ----MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVE
254 QAAVRDVQEACAFELYTLPKLYLKMQYCVSCAIHSKVVRVRSRTDRRVRE
255 PPQR-FRRPRDDLPK------T----G---QA---P---RPAGG-P----
256 -P-A----------APRT--
257 >4081.Solyc06g007470.2.1
258 --------------------------------------------------
259 --------------------------------------------------
260 --------------------------------------------------
261 ----MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVE
262 QAAVRDVQEACAFELYTLPKLYLKMQYCVSCAIHSKVVRVRSRTDRRVRE
263 PPQR-FRRPRDDLPK------T----G---QA---P---RPAGG-P----
264 -P-A----------APRT--
265 >4641.GSMUA_Achr3P17860_001
266 --------------------------------------------------
267 --------------------------------------------------
268 -------------------------------------------MCQRSGY
269 ITAKMTFKRRNGGRNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVE
270 QAAVRDVQEACAYDGYTLPKLYIKMQYCVSCAIHSKVVRVRSRTDRRNRE
271 PPPR-FR-RRDDLAR------P----G---QG---P---RPAGV-GN---
272 ---P----------PPRP--
273 >4641.GSMUA_Achr6P23430_001
274 --------------------------------------------------
275 --------------------------------------------------
276 ----------------------MSTRQHYIFSPPCDVARLAFSQTLTRSE
277 WAATMTFKRRNGGRNKHGRGHVNFIRCSNCGKCCPKDKAIKRFLVRNIVE
278 QAAVRDVQEACAYDGYTLPKLYIKMQYCVSCAIHSKVVRVRSRTDRRNRE
279 PPQR-FR-RRDDLPR------P----G---QG---P---RPAGA-GN---
280 ---P----------P-RP--
281 >3694.POPTR_0019s08500.1
282 --------------------------------------------------
283 --------------------------------------------------
284 --------------------------------------------------
285 ----MTFKRRNGGRNKHGRGHTKFIRCSNCGKCCPKDKAIKRFLVRNIVE
286 QAAVRDVQESCVYDGYVLPKLYVKMQYCVSCAIHSRVVRVRSRSERRNRE
287 PPQR-FIRRRDDMPK------P-GQPGQPGQA---P---RPAGG-A----
288 ---------P----AART--
289 >3694.POPTR_0013s09160.1
290 --------------------------------------------------
291 --------------------------------------------------
292 --------------------------------------------------
293 ----MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVE
294 QAAVRDVQESCVYDGYVLPKLYVKMQYCVSCAIHSRVVRVRSSSERRKRE
295 PPQR-FIRRRDDMPK------P-GQPGQPGQA---P---RPTGA-A----
296 ---------P----A-RV--
297 >3847.GLYMA06G14950.1
298 --------------------------------------------------
299 --------------------------------------------------
300 --------------------------------------------------
301 ----MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVE
302 QAAVRDVQEACVYEQYTLPKLYVKMQYCVSCAIHSHVVRVRSRTDRRKRE
303 PPQR-FIRRRDDAPR------P-GQPG---QA---P---RPAGV-GA---
304 ---------P----A-RT--
305 >3847.GLYMA04G39940.1
306 --------------------------------------------------
307 --------------------------------------------------
308 --------------------------------------------------
309 ----MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVE
310 QAAVRDVQEACVYEQYTLPKLYVKMQYCVSCAIHSHVVRVRSRTDRRKRE
311 PPQR-FIRRRDDAPR------P-GQPG---QA---P---RPAGV-GA---
312 ---------P----A-RA--
313 >3847.GLYMA17G18200.1
314 --------------------------------------------------
315 --------------------------------------------------
316 --------------------------------------------------
317 ----MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVE
318 QAAVRDVQEACVYEQYTLPKLYVKMQYCVSCAIHSHVVRVRSRTDRRKRD
319 PPQR-FIRRRDDAQR------P-GQPG---QA---P---RPAGT-AA---
320 ---------P----V-RT--
321 >3847.GLYMA05G21370.1
322 --------------------------------------------------
323 --------------------------------------------------
324 --------------------------------------------------
325 ----MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVE
326 QAAVRDVQEACVYEQYTLPKLYVKMQYCVSCAIHSHVVRVRSRTDRRKRE
327 PPQR-FIRRRDDAQR------P-GQPG---QA---P---RPAGT-GA---
328 ---------P----V-RT--
329 >3847.GLYMA14G38950.2
330 --------------------------------------------------
331 --------------------------------------------------
332 --------------------------------------------------
333 ----MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVE
334 QAAVRDVQEACVYEQYTLPKLYVKMQYCVSCAIHSHVVRVRSRTDRRKRE
335 PPQR-FIRRRDDAPR------P-GQPG---QG---P---RPAGT-AA---
336 ---A-----P----V-RT--
337 >3847.GLYMA02G40660.1
338 --------------------------------------------------
339 --------------------------------------------------
340 --------------------------------------------------
341 ----MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVE
342 QAAVRDVQEACVYEQYTLPKLYVKMQYCVSCAIHSHVVRVRSRTDRRKRE
343 PPQR-FIRRRDDAPR------P-GQPGG--QG---P---RPAGT-AA---
344 ---------P----V-RT--
345 >29760.VIT_06s0004g07940.t01
346 --------------------------------------------------
347 --------------------------------------------------
348 --------------------------------------------------
349 ----MTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVE
350 QAAVRDVQEACVYDTYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRD
351 PPLR-FR-RRDDMPK------P----G---QA---P---RPAGA-A----
352 ---------A----A-RP--
353 >29760.VIT_13s0067g02700.t01
354 --------------------------------------------------
355 --------------------------------------------------
356 ----------------------MGGRTGLISNPSP------AQFAAPRTR
357 SLTVMTFKRRNGGRNKHGRGHVKFIRCSNCGKCCPKDKAIKRFLVRNIVE
358 QAAVRDVQEACVYDTYTLPKLYAKMQYCVSCAIHSHVVRVRSRTDRRKRD
359 PPQR-FR-RRDDMPK------P----G---QA---P---RPAGG-A----
360 ---------P----V-RT--