Mercurial > repos > pavlo-lutsik > rnbeads

changeset 4:24ac7f1e60f6 draft

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Uploaded dependencies
author pavlo-lutsik
date Wed, 17 Apr 2013 08:08:07 -0400
parents c21f50b45559
children 609d1a687bff
files rnbeads_galaxy_wrapper.sh tool_dependencies.xml
diffstat 2 files changed, 3 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/rnbeads_galaxy_wrapper.sh	Wed Apr 17 07:56:00 2013 -0400
+++ b/rnbeads_galaxy_wrapper.sh	Wed Apr 17 08:08:07 2013 -0400
@@ -1,4 +1,4 @@
 #!/bin/bash
 
-#Rscript  --slave $(dirname $(readlink -f $0))/RnBeadsGalaxy.R $*
-Rscript  --slave \$R_SCRIPTS_PATH/RnBeadsGalaxy.R $*
\ No newline at end of file
+Rscript --slave $(dirname $(readlink -f $0))/RnBeadsGalaxy.R $*
+#Rscript --slave \$R_SCRIPTS_PATH/RnBeadsGalaxy.R $*
\ No newline at end of file
--- a/tool_dependencies.xml	Wed Apr 17 07:56:00 2013 -0400
+++ b/tool_dependencies.xml	Wed Apr 17 08:08:07 2013 -0400
@@ -12,7 +12,7 @@
                 <action type="set_environment">
                     <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                 </action>
-                <action type="shell_command">R --no-save &lt;&lt;&lt; "source('http://rnbeads.mpi-inf.mpg.de')"</action>
+                <action type="shell_command">R --no-save &lt;&lt;&lt; "install.packages("getopt"); source('http://rnbeads.mpi-inf.mpg.de')"</action>
             </actions>
         </install>
         <readme>