Mercurial > repos > perssond > coreograph
annotate macros.xml @ 3:ee92746d141a draft default tip
planemo upload for repository https://github.com/ohsu-comp-bio/UNetCoreograph commit 72a33d7c3ad18e717ec61c6b845099d69b9b7abd
author | goeckslab |
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date | Tue, 20 Sep 2022 17:34:36 +0000 |
parents | 224e0cf4aaeb |
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99308601eaa6
"planemo upload for repository https://github.com/ohsu-comp-bio/UNetCoreograph commit fb90660a1805b3f68fcff80d525b5459c3f7dfd6-dirty"
perssond
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1 <?xml version="1.0"?> |
99308601eaa6
"planemo upload for repository https://github.com/ohsu-comp-bio/UNetCoreograph commit fb90660a1805b3f68fcff80d525b5459c3f7dfd6-dirty"
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2 <macros> |
99308601eaa6
"planemo upload for repository https://github.com/ohsu-comp-bio/UNetCoreograph commit fb90660a1805b3f68fcff80d525b5459c3f7dfd6-dirty"
perssond
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3 <xml name="requirements"> |
99308601eaa6
"planemo upload for repository https://github.com/ohsu-comp-bio/UNetCoreograph commit fb90660a1805b3f68fcff80d525b5459c3f7dfd6-dirty"
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4 <requirements> |
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224e0cf4aaeb
planemo upload for repository https://github.com/ohsu-comp-bio/UNetCoreograph commit cb09eb9d2fa0feae993ae994b6beae05972c644b
goeckslab
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5 <!-- |
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99308601eaa6
"planemo upload for repository https://github.com/ohsu-comp-bio/UNetCoreograph commit fb90660a1805b3f68fcff80d525b5459c3f7dfd6-dirty"
perssond
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6 <requirement type="package" version="3.6">python</requirement> |
99308601eaa6
"planemo upload for repository https://github.com/ohsu-comp-bio/UNetCoreograph commit fb90660a1805b3f68fcff80d525b5459c3f7dfd6-dirty"
perssond
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7 <requirement type="package" version="1.15.1">tensorflow-estimator</requirement> |
99308601eaa6
"planemo upload for repository https://github.com/ohsu-comp-bio/UNetCoreograph commit fb90660a1805b3f68fcff80d525b5459c3f7dfd6-dirty"
perssond
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8 <requirement type="package" version="1.15">tensorflow</requirement> |
99308601eaa6
"planemo upload for repository https://github.com/ohsu-comp-bio/UNetCoreograph commit fb90660a1805b3f68fcff80d525b5459c3f7dfd6-dirty"
perssond
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9 <requirement type="package">cython</requirement> |
99308601eaa6
"planemo upload for repository https://github.com/ohsu-comp-bio/UNetCoreograph commit fb90660a1805b3f68fcff80d525b5459c3f7dfd6-dirty"
perssond
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10 <requirement type="package" version="0.14.2">scikit-image</requirement> |
99308601eaa6
"planemo upload for repository https://github.com/ohsu-comp-bio/UNetCoreograph commit fb90660a1805b3f68fcff80d525b5459c3f7dfd6-dirty"
perssond
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11 <requirement type="package">matplotlib</requirement> |
99308601eaa6
"planemo upload for repository https://github.com/ohsu-comp-bio/UNetCoreograph commit fb90660a1805b3f68fcff80d525b5459c3f7dfd6-dirty"
perssond
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12 <requirement type="package" version="2020.2.16">tifffile</requirement> |
99308601eaa6
"planemo upload for repository https://github.com/ohsu-comp-bio/UNetCoreograph commit fb90660a1805b3f68fcff80d525b5459c3f7dfd6-dirty"
perssond
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13 <requirement type="package" version="1.1.0">scipy</requirement> |
99308601eaa6
"planemo upload for repository https://github.com/ohsu-comp-bio/UNetCoreograph commit fb90660a1805b3f68fcff80d525b5459c3f7dfd6-dirty"
perssond
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14 <requirement type="package">opencv</requirement> |
99308601eaa6
"planemo upload for repository https://github.com/ohsu-comp-bio/UNetCoreograph commit fb90660a1805b3f68fcff80d525b5459c3f7dfd6-dirty"
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15 <requirement type="package" version="0.8.1">pytiff</requirement> |
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224e0cf4aaeb
planemo upload for repository https://github.com/ohsu-comp-bio/UNetCoreograph commit cb09eb9d2fa0feae993ae994b6beae05972c644b
goeckslab
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16 --> |
224e0cf4aaeb
planemo upload for repository https://github.com/ohsu-comp-bio/UNetCoreograph commit cb09eb9d2fa0feae993ae994b6beae05972c644b
goeckslab
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17 <container type="docker">labsyspharm/unetcoreograph:@TOOL_VERSION@</container> |
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99308601eaa6
"planemo upload for repository https://github.com/ohsu-comp-bio/UNetCoreograph commit fb90660a1805b3f68fcff80d525b5459c3f7dfd6-dirty"
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18 </requirements> |
99308601eaa6
"planemo upload for repository https://github.com/ohsu-comp-bio/UNetCoreograph commit fb90660a1805b3f68fcff80d525b5459c3f7dfd6-dirty"
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19 </xml> |
99308601eaa6
"planemo upload for repository https://github.com/ohsu-comp-bio/UNetCoreograph commit fb90660a1805b3f68fcff80d525b5459c3f7dfd6-dirty"
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20 |
99308601eaa6
"planemo upload for repository https://github.com/ohsu-comp-bio/UNetCoreograph commit fb90660a1805b3f68fcff80d525b5459c3f7dfd6-dirty"
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21 <xml name="version_cmd"> |
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224e0cf4aaeb
planemo upload for repository https://github.com/ohsu-comp-bio/UNetCoreograph commit cb09eb9d2fa0feae993ae994b6beae05972c644b
goeckslab
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22 <version_command>echo @TOOL_VERSION@</version_command> |
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99308601eaa6
"planemo upload for repository https://github.com/ohsu-comp-bio/UNetCoreograph commit fb90660a1805b3f68fcff80d525b5459c3f7dfd6-dirty"
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23 </xml> |
99308601eaa6
"planemo upload for repository https://github.com/ohsu-comp-bio/UNetCoreograph commit fb90660a1805b3f68fcff80d525b5459c3f7dfd6-dirty"
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24 <xml name="citations"> |
99308601eaa6
"planemo upload for repository https://github.com/ohsu-comp-bio/UNetCoreograph commit fb90660a1805b3f68fcff80d525b5459c3f7dfd6-dirty"
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25 <citations> |
99308601eaa6
"planemo upload for repository https://github.com/ohsu-comp-bio/UNetCoreograph commit fb90660a1805b3f68fcff80d525b5459c3f7dfd6-dirty"
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26 </citations> |
99308601eaa6
"planemo upload for repository https://github.com/ohsu-comp-bio/UNetCoreograph commit fb90660a1805b3f68fcff80d525b5459c3f7dfd6-dirty"
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27 </xml> |
99308601eaa6
"planemo upload for repository https://github.com/ohsu-comp-bio/UNetCoreograph commit fb90660a1805b3f68fcff80d525b5459c3f7dfd6-dirty"
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28 |
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224e0cf4aaeb
planemo upload for repository https://github.com/ohsu-comp-bio/UNetCoreograph commit cb09eb9d2fa0feae993ae994b6beae05972c644b
goeckslab
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29 <token name="@TOOL_VERSION@">2.2.8</token> |
3
ee92746d141a
planemo upload for repository https://github.com/ohsu-comp-bio/UNetCoreograph commit 72a33d7c3ad18e717ec61c6b845099d69b9b7abd
goeckslab
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30 <token name="@VERSION_SUFFIX@">1</token> |
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watsocam
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31 <token name="@CMD_BEGIN@"><![CDATA[ |
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224e0cf4aaeb
planemo upload for repository https://github.com/ohsu-comp-bio/UNetCoreograph commit cb09eb9d2fa0feae993ae994b6beae05972c644b
goeckslab
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32 UNET_PATH="" && |
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33 if [ -f "/app/UNetCoreograph.py" ]; then |
57f1260ca94e
"planemo upload commit fec9dc76b3dd17b14b02c2f04be9d30f71eba1ae"
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34 export UNET_PATH="/app/UNetCoreograph.py"; |
57f1260ca94e
"planemo upload commit fec9dc76b3dd17b14b02c2f04be9d30f71eba1ae"
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35 else |
57f1260ca94e
"planemo upload commit fec9dc76b3dd17b14b02c2f04be9d30f71eba1ae"
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36 export UNET_PATH="${__tool_directory__}/UNetCoreograph.py"; |
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224e0cf4aaeb
planemo upload for repository https://github.com/ohsu-comp-bio/UNetCoreograph commit cb09eb9d2fa0feae993ae994b6beae05972c644b
goeckslab
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37 fi && |
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38 ]]></token> |
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"planemo upload for repository https://github.com/ohsu-comp-bio/UNetCoreograph commit fb90660a1805b3f68fcff80d525b5459c3f7dfd6-dirty"
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39 </macros> |