Mercurial > repos > perssond > quantification

diff quantification.xml @ 5:3a916c4e9f5f draft

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planemo upload for repository https://github.com/goeckslab/tools-mti commit 0762a583dd9d7333f9b039bc06003caaff0f2103
author goeckslab
date Wed, 28 Dec 2022 21:19:44 +0000
parents 261464223fa3
children e11d5fafd0cc
line wrap: on
line diff
--- a/quantification.xml	Tue Sep 06 23:18:12 2022 +0000
+++ b/quantification.xml	Wed Dec 28 21:19:44 2022 +0000
@@ -6,7 +6,7 @@
     <expand macro="requirements"/>
     <expand macro="version_cmd"/>
 
-    <command detect_errors="exit_code"><![CDATA[
+    <command detect_errors="aggressive"><![CDATA[
     ln -s '$image' 'input.ome.tiff' &&
     ln -s '$primary_mask' 'primary_mask.tiff' &&
     #if $supp_mask
@@ -64,12 +64,12 @@
             <param name="channel_names" value="channels.csv" />
             <output name="cellmask" ftype="csv">
                 <assert_contents>
-                    <has_n_columns n="11" sep="," delta="1" />
+                    <has_n_lines n="264" delta="1" />
                 </assert_contents>
             </output>
             <output name="suppmask" ftype="csv">
                 <assert_contents>
-                    <has_n_columns n="11" sep="," delta="1" />
+                    <has_n_lines n="264" delta="1" />
                 </assert_contents>
             </output>
         </test>