Mercurial > repos > peterjc > blastxml_to_top_descr

diff tools/ncbi_blast_plus/tool_dependencies.xml @ 2:44ecdccbe19d draft

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Uploaded v0.0.2a, fixed dependency declaration
author peterjc
date Fri, 08 Feb 2013 06:02:35 -0500
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/tools/ncbi_blast_plus/tool_dependencies.xml	Fri Feb 08 06:02:35 2013 -0500
@@ -0,0 +1,21 @@
+<?xml version="1.0"?>
+<tool_dependency>
+    <package name="blast+" version="2.2.26+">
+        <install version="1.0">
+            <actions>
+                <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.26/ncbi-blast-2.2.26+-src.tar.gz</action>
+                <action type="shell_command">cd c++ &amp;&amp; ./configure --prefix=$INSTALL_DIR &amp;&amp; make &amp;&amp; make install</action>
+                <action type="set_environment">
+                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
+                </action>
+            </actions>
+        </install>
+        <readme>
+These links provide information for building the NCBI Blast+ package in most environments.
+
+System requirements
+http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&amp;PAGE_TYPE=BlastDocs&amp;DOC_TYPE=Download
+        </readme>
+    </package>
+</tool_dependency>
+