Mercurial > repos > peterjc > blastxml_to_top_descr

view tools/ncbi_blast_plus/tool_dependencies.xml @ 2:44ecdccbe19d draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded v0.0.2a, fixed dependency declaration
author peterjc
date Fri, 08 Feb 2013 06:02:35 -0500
parents
children
line wrap: on
line source

<?xml version="1.0"?>
<tool_dependency>
    <package name="blast+" version="2.2.26+">
        <install version="1.0">
            <actions>
                <action type="download_by_url">ftp://ftp.ncbi.nlm.nih.gov/blast/executables/blast+/2.2.26/ncbi-blast-2.2.26+-src.tar.gz</action>
                <action type="shell_command">cd c++ &amp;&amp; ./configure --prefix=$INSTALL_DIR &amp;&amp; make &amp;&amp; make install</action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR/bin</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
These links provide information for building the NCBI Blast+ package in most environments.

System requirements
http://blast.ncbi.nlm.nih.gov/Blast.cgi?CMD=Web&amp;PAGE_TYPE=BlastDocs&amp;DOC_TYPE=Download
        </readme>
    </package>
</tool_dependency>