Mercurial > repos > peterjc > clinod
annotate tools/clinod/tool_dependencies.xml @ 4:4d9a4a43861b draft
Uploaded v0.0.7, uses $GALAXY_SLOTS and embeds citation in tool XML.
author | peterjc |
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date | Thu, 20 Nov 2014 06:15:49 -0500 |
parents | d1aebb0acee7 |
children | 9485cdfca57e |
rev | line source |
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2 | 1 <?xml version="1.0"?> |
2 <tool_dependency> | |
3 <package name="clinod" version="1.3"> | |
4 <install version="1.0"> | |
5 <actions> | |
6 <!-- Set environment variable $CLINOD so wrapper knows where to look --> | |
7 <action type="set_environment"> | |
8 <environment_variable name="CLINOD" action="set_to">$INSTALL_DIR</environment_variable> | |
9 </action> | |
10 <!-- clinod requires the SNNS Batch Interpreter v1.0 executable --> | |
11 <action type="shell_command">wget http://www.ra.cs.uni-tuebingen.de/downloads/SNNS/SNNSv4.3.tar.gz</action> | |
4
4d9a4a43861b
Uploaded v0.0.7, uses $GALAXY_SLOTS and embeds citation in tool XML.
peterjc
parents:
2
diff
changeset
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12 <action type="shell_command">tar -zxvf SNNSv4.3.tar.gz</action> |
2 | 13 <action type="move_file"><source>SNNSv4.3/tools/bin/x86_64-pc-unknown-linux-gnuoldld/batchman</source><destination>$INSTALL_DIR/</destination></action> |
14 <!-- clinod itself is just a JAR file --> | |
15 <action type="shell_command">wget http://www.compbio.dundee.ac.uk/nod/downloads/clinod-1.3.jar</action> | |
16 <!-- Don't need to move it, $INSTALL_DIR is the current directory | |
17 <action type="move_file"><source>clinod-1.3.jar</source><destination>$INSTALL_DIR</destination></action> | |
18 --> | |
19 </actions> | |
20 </install> | |
21 <readme> | |
22 Downloads and installs the command line NoD (clinod) JAR file and the binary | |
23 dependency batchman, and sets $CLINOD to the folder used. | |
24 | |
25 We could download, compiles and install the SNNS Batch Interpreter v1.0 executable | |
26 (batchman) from Stuttgart Neural Network Simulator (SNNS) v4.2. However, we simplify | |
27 this by downloading SNNS v4.3 which includes the precompiled copy of batch man. | |
28 | |
29 For more details, see: | |
30 http://www.compbio.dundee.ac.uk/www-nod/downloads.jsp | |
31 </readme> | |
32 </package> | |
33 </tool_dependency> | |
34 |