Mercurial > repos > peterjc > fastq_paired_unpaired
changeset 5:b38bbcbd458d draft
v0.1.2 belatedly declare Biopython dependency
| author | peterjc |
|---|---|
| date | Wed, 05 Aug 2015 11:17:49 -0400 |
| parents | 09f9f0e29e47 |
| children | f396701fbf32 |
| files | tools/fastq_paired_unpaired/README.rst tools/fastq_paired_unpaired/fastq_paired_unpaired.xml tools/fastq_paired_unpaired/tool_dependencies.xml |
| diffstat | 3 files changed, 11 insertions(+), 3 deletions(-) [+] |
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--- a/tools/fastq_paired_unpaired/README.rst Wed Aug 05 11:06:38 2015 -0400 +++ b/tools/fastq_paired_unpaired/README.rst Wed Aug 05 11:17:49 2015 -0400 @@ -20,7 +20,8 @@ ====================== This should be straightforward, Galaxy should automatically download and install -the tool from the Galaxy Tool Shed, and run the unit tests +the tool from the Galaxy Tool Shed, and Biopython, and allow you to run the unit +tests. Manual Installation @@ -69,6 +70,7 @@ v0.1.1 - Reorder XML elements (internal change only). - Use ``format_source=...`` tag. - Planemo for Tool Shed upload (``.shed.yml``, internal change only). +v0.1.2 - Belatedly declare Biopython dependency via Tool Shed. ======= ======================================================================
--- a/tools/fastq_paired_unpaired/fastq_paired_unpaired.xml Wed Aug 05 11:06:38 2015 -0400 +++ b/tools/fastq_paired_unpaired/fastq_paired_unpaired.xml Wed Aug 05 11:17:49 2015 -0400 @@ -1,7 +1,7 @@ -<tool id="fastq_paired_unpaired" name="Divide FASTQ file into paired and unpaired reads" version="0.1.1"> +<tool id="fastq_paired_unpaired" name="Divide FASTQ file into paired and unpaired reads" version="0.1.2"> <description>using the read name suffices</description> <requirements> - <requirement type="package" version="1.64">biopython</requirement> + <requirement type="package" version="1.65">biopython</requirement> <requirement type="python-module">Bio</requirement> </requirements> <stdio>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tools/fastq_paired_unpaired/tool_dependencies.xml Wed Aug 05 11:17:49 2015 -0400 @@ -0,0 +1,6 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="biopython" version="1.65"> + <repository changeset_revision="dc595937617c" name="package_biopython_1_65" owner="biopython" toolshed="https://toolshed.g2.bx.psu.edu" /> + </package> +</tool_dependency>