Mercurial > repos > peterjc > mira4_assembler

annotate test-data/ecoli.mira4_de_novo.fasta @ 3:a4f602cc3aa9 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
v0.0.9, was missing mirabait. Adds tests for miraconvert
author peterjc
date Fri, 02 Oct 2015 06:12:23 -0400
parents 6a88b42ce6b9
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
0
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
1 >MIRA_c1
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
2 gccagggctattttaccggcgcagtatcgccgccaggattgcattgcgcacgggcgacat
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
3 ctggcaggcttcattcacgcctgctattcccgtcagcctgagcttgccgcgaagctgatg
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
4 aaagatgttatcgctgaaccctaccgtgaacggttactgccaggcttccggcaggcgcgg
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
5 caggcggtcgcggaaatcggcgcggtagcgagcggtatctccggctccggcccgaccttg
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
6 ttcgctctgtgtgacaagccggaaaccgcccagcgcgttgccgactggttgggtaagaac
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
7 tacctgcaaaatcaggaaggttttgttcatatttgccggctggatacggcgggcgcacga
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
8 gtactggaaaactaaatgaaactctacaatctgaaagatcacaacgagcaggtcagcttt
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
9 gcgcaagccgtaacccaggggttgggcaaaaatcaggggctgttttttccgcacgacctg
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
10 ccggaattcagcctgactgaaattgatgagatgctgaagctggattttgtcacccgcagt
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
11 gcgaagatcctctcggcgtttattggtgatgaaatcccacaggaaatcctggaagagcgc
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
12 gtgcgcgcggcgtttgccttcccggctccggtcgccaatgttgaaagcgatgtcggttgt
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
13 ctggaattgttccacgggccaacgctggcatttaaagatttcggcggtcgctttatggca
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
14 caaatgctgacccatattgcgggtgataagccagtgaccattctgaccgcgacctccggt
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
15 gataccggagcggcagtggctcatgctttctacggtttaccgaatgtgaaagtggttatc
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
16 ctctatccacgaggcaaaatcagtccactgcaagaaaaactgttctgtacattgggcggc
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
17 aatatcgaaactgttgccatcgacggcgatttcgatgcctgtcaggcgctggtgaagcag
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
18 gcgtttgatgatgaagaactgaaagtggcgctagggttaaactcggctaactcgattaac
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
19 atcagccgtttgctggcgcagatttgctactactttgaagctgttgcgcagctgccgcag
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
20 gagacgcgcaaccagctggttgtctcggtgccaagcggaaacttcggcgatttgacggcg
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
21 ggtctgctggcgaagtcactcggtctgccggtgaaacgttttattgctgcgaccaacgtg
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
22 aacgataccgtgccacgtttcctgcacgacggtcagtggtcacccaaagcgactcaggcg
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
23 acgttatccaacgcgatggacgtgagtcagccgaacaactggccgcgtgtggaagagttg
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
24 ttccgccgcaaaatctggcaactgaaagagctgggttatgcagccgtggatgatgaaacc
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
25 acgcaacagacaatgcgtgagttaaaagaactgggctacacttcggagccgcacgctgcc
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
26 gtagcttatcgtgcgctgcgtgatcagttgaatccaggcgaatatggcttgttcctcggc
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
27 accgcgcatccggcgaaatttaaagagagcgtggaagcgattctcggtgaaacgttggat
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
28 ctgccaaaagagctggcagaacgtgctgatttacccttgctttcacataatctgcccgcc
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
29 gattttgctgcgttgcgtaaattgatgatgaatcatcagtaaaatctattcattatctca
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
30 atagcttttcattctgactgcaacgggcaatatgtctctgtgtggattaaaaaaagagtg
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
31 tctgatagcagcttctgaactggttacctgccgtgagtaaattaaaattttattgactta
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
32 ggtcactaaatactttaaccaatataggcatagcgcacagacagataaaaattacagagt
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
33 acacaacatccatgaaacgcattagcaccaccattaccaccaccatcaccattaccacaa
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
34 cggtgcgggctgacgcgtacaggaaacacagaaaaaagcccgcacctgacagtgcgggct
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
35 ttttttttcgaccaaaggtaacgaggtaacaaccatgcgagagttgaagttcggcggtac
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
36 atcagtggcaaatgcagaacgttttctgcgtgttgccgatattctggaaagcaatgccag
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
37 gcaggggcaggtggccaccgtcctctctgcccccgccaaaacaccaaccacctggtggcg
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
38 atgattgaaaaaaccattagcggccaggatgctttacccaatatcagcgatgccgaacgt
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
39 atttttgccgaacttttgacgggactcgccgccgcccagccggggttcccgctggcgacg
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
40 tcaattgaaaactttcgtcgatcaggaatttgcccaaataaaacatgtcctgcatggcat
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
41 tagtttgttggggcagtgcccggatagcatcaacgctgcgctgatttgccgtggcgagaa
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
42 aatgtcgatcgccgttatggccggcgtattagaagcgcgcggtcacaacgttactgttat
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
43 cgatccggtcgaaaaactgctggcagtggggcattacctcgaatctaccgtcgatattgc
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
44 tgagtccacccgccgtattgcggcaagccgcattccggctgatcacatggtgctgatggc
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
45 aggtttcaccgccggtaatgaaaaaggcgaactggtggtgcttggacgcaacggttccga
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
46 ctactctgctgcggtgctggctgcctgtttacgcgccgattgttgcgagatttggacgga
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
47 cgttgacggggtctatacctgcgacccgcgtcaggtgcccgatgcgaggttgttgaagtc
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
48 gatgtcctaccaggaagcgatggagctttcctacttcggcgctaaagttcttcacccccg
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
49 caccattacccccatcgcccagttccagatcccttgcctgattaaaaataccggaaatcc
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
50 tcaagcaccaggtacgctcattggtgccagccgtgatgaagacgaattaccggtcaaggg
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
51 catttccaatctgaataacatggcaatgttcagcgtttctggtccggggatgaaagggat
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
52 ggtcggcatggcggcgcgcgtctttgcagcgatgtcacgcgcccgtatttccgtggtgct
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
53 gattacgcaatcatcttccgaatacagcatcagtttctgcgttccacaaagcgactgtgt
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
54 gcgagctgaacgggcaatgcaggaagagttctacctggaactgaaagaaggcttactgga
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
55 gccgctggcagtgacggaacggctggccattatctcggtggtaggtgatggtatgcgcac
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
56 cttgcgtgggatctcggcgaaattctttgccgcactggcccgcgccaatatcaacattgt
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
57 cgccattgctcagggatcttctgaacgctcaatctctgtcgtggtaaataacgatgatgc
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
58 gaccactggcgtgcgcgttactcatcagatgctgttcaataccgatcaggttatcgaagt
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
59 gtttgtgattggcgtcggtggcgttggcggtgcgctgctggagcaactgaagcgtcagca
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
60 aagctggctgaagaataaacatatcgacttacgtgtctgcggtgttgccaactcgaaggc
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
61 tctgctcaccaatgtacatggccttaatctggaaaactggcaggaagaactggcgcaagc
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
62 caaagagccgtttaatctcgggcgcttaattcgcctcgtgaaagaatatcatctgctgaa
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
63 cccggtcattgttgactgcacttccagccaggcagtggcggatcaatatgccgacttcct
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
64 gcgcgaaggtttccacgttgtcacgccgaacaaaaaggccaacacctcgtcgatggatta
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
65 ctaccatcagttgcgttatgcggcggaaaaatcgcggcgtaaattcctctatgacaccaa
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
66 cgttggggctggattaccggttattgagaacctgcaaaatctgctcaatgcaggtgatga
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
67 attgatgaagttctccggcattctttctggttcgctttcttatatcttcggcaagttaga
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
68 cgaaggcatgagtttctccgaggcgaccacgctggcgcgggaaatgggttataccgaacc
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
69 ggacccgcgagatgatctttctggtatggatgtggcgcgtaaactattgattctcgctcg
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
70 tgaaacgggacgtgaactggagctggcggatattgaaattgaacctgtgctgcccgcaga
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
71 gtttaacgccgagggtgatgttgccgcttttatggcgaatctgtcacaactcgacgatct
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
72 ctttgccgcgcgcgtggcgaaggcccgtgatgaaggaaaagttttgcgctatgttggcaa
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
73 tattgatgaagatggcgtctgccgcgtgaagattgccgaagtggatggtaatgatccgct
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
74 gttcaaagtgaaaaatggcgaaaacgccctggccttctatagccactattatcagccgct
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
75 gccgttggtactgcgcggatatggtgcgggcaatgacgttacagctgccggtgtctttgc
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
76 tgatctgctacgtaccctctcatggaagttaggagtctgacatggttaaagtttatgccc
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
77 cggcttccagtgccaatatgagcgtcgggtttgatgtgctcggggcggcggtgacacctg
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
78 ttgatggtgcattgctcggagatgtagtcacggttgaggcggcagagacattcagtctca
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
79 acaacctcggacgctttgccgataagctgccgtcagaaccacgggaaaatatcgtttatc
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
80 agtgctgggagcgtttttgccaggaactgggtaagcaaattccagtggcgatgaccctgg
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
81 aaaagaatatgccgatcggttcgggcttaggctccagtgcctgttcggtggtcgcggcgc
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
82 tgatggcgatgaatgaacactgcggcaagccgcttaatgacactcgtttgctggctttga
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
83 tgggcgagctggaaggccgtatctccggcagcattcattacgacaacgtggcaccgtgtt
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
84 ttctcggtggtatgcagttgatgatcgaagaaaacgacatcatcagccagcaagtgccag
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
85 ggtttgatgagtggctgtgggtgctggcgtatccggggattaaagtctcgacggcagaag
6a88b42ce6b9 Uploaded v0.0.4, previously only on the TestToolShed
peterjc
parents:
diff changeset
86 ccagggctattttaccggcgcagtatcgccgcca