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view test-data/ecoli.mira4_de_novo.fasta @ 3:a4f602cc3aa9 draft

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v0.0.9, was missing mirabait. Adds tests for miraconvert
author peterjc
date Fri, 02 Oct 2015 06:12:23 -0400
parents 6a88b42ce6b9
children
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>MIRA_c1
gccagggctattttaccggcgcagtatcgccgccaggattgcattgcgcacgggcgacat
ctggcaggcttcattcacgcctgctattcccgtcagcctgagcttgccgcgaagctgatg
aaagatgttatcgctgaaccctaccgtgaacggttactgccaggcttccggcaggcgcgg
caggcggtcgcggaaatcggcgcggtagcgagcggtatctccggctccggcccgaccttg
ttcgctctgtgtgacaagccggaaaccgcccagcgcgttgccgactggttgggtaagaac
tacctgcaaaatcaggaaggttttgttcatatttgccggctggatacggcgggcgcacga
gtactggaaaactaaatgaaactctacaatctgaaagatcacaacgagcaggtcagcttt
gcgcaagccgtaacccaggggttgggcaaaaatcaggggctgttttttccgcacgacctg
ccggaattcagcctgactgaaattgatgagatgctgaagctggattttgtcacccgcagt
gcgaagatcctctcggcgtttattggtgatgaaatcccacaggaaatcctggaagagcgc
gtgcgcgcggcgtttgccttcccggctccggtcgccaatgttgaaagcgatgtcggttgt
ctggaattgttccacgggccaacgctggcatttaaagatttcggcggtcgctttatggca
caaatgctgacccatattgcgggtgataagccagtgaccattctgaccgcgacctccggt
gataccggagcggcagtggctcatgctttctacggtttaccgaatgtgaaagtggttatc
ctctatccacgaggcaaaatcagtccactgcaagaaaaactgttctgtacattgggcggc
aatatcgaaactgttgccatcgacggcgatttcgatgcctgtcaggcgctggtgaagcag
gcgtttgatgatgaagaactgaaagtggcgctagggttaaactcggctaactcgattaac
atcagccgtttgctggcgcagatttgctactactttgaagctgttgcgcagctgccgcag
gagacgcgcaaccagctggttgtctcggtgccaagcggaaacttcggcgatttgacggcg
ggtctgctggcgaagtcactcggtctgccggtgaaacgttttattgctgcgaccaacgtg
aacgataccgtgccacgtttcctgcacgacggtcagtggtcacccaaagcgactcaggcg
acgttatccaacgcgatggacgtgagtcagccgaacaactggccgcgtgtggaagagttg
ttccgccgcaaaatctggcaactgaaagagctgggttatgcagccgtggatgatgaaacc
acgcaacagacaatgcgtgagttaaaagaactgggctacacttcggagccgcacgctgcc
gtagcttatcgtgcgctgcgtgatcagttgaatccaggcgaatatggcttgttcctcggc
accgcgcatccggcgaaatttaaagagagcgtggaagcgattctcggtgaaacgttggat
ctgccaaaagagctggcagaacgtgctgatttacccttgctttcacataatctgcccgcc
gattttgctgcgttgcgtaaattgatgatgaatcatcagtaaaatctattcattatctca
atagcttttcattctgactgcaacgggcaatatgtctctgtgtggattaaaaaaagagtg
tctgatagcagcttctgaactggttacctgccgtgagtaaattaaaattttattgactta
ggtcactaaatactttaaccaatataggcatagcgcacagacagataaaaattacagagt
acacaacatccatgaaacgcattagcaccaccattaccaccaccatcaccattaccacaa
cggtgcgggctgacgcgtacaggaaacacagaaaaaagcccgcacctgacagtgcgggct
ttttttttcgaccaaaggtaacgaggtaacaaccatgcgagagttgaagttcggcggtac
atcagtggcaaatgcagaacgttttctgcgtgttgccgatattctggaaagcaatgccag
gcaggggcaggtggccaccgtcctctctgcccccgccaaaacaccaaccacctggtggcg
atgattgaaaaaaccattagcggccaggatgctttacccaatatcagcgatgccgaacgt
atttttgccgaacttttgacgggactcgccgccgcccagccggggttcccgctggcgacg
tcaattgaaaactttcgtcgatcaggaatttgcccaaataaaacatgtcctgcatggcat
tagtttgttggggcagtgcccggatagcatcaacgctgcgctgatttgccgtggcgagaa
aatgtcgatcgccgttatggccggcgtattagaagcgcgcggtcacaacgttactgttat
cgatccggtcgaaaaactgctggcagtggggcattacctcgaatctaccgtcgatattgc
tgagtccacccgccgtattgcggcaagccgcattccggctgatcacatggtgctgatggc
aggtttcaccgccggtaatgaaaaaggcgaactggtggtgcttggacgcaacggttccga
ctactctgctgcggtgctggctgcctgtttacgcgccgattgttgcgagatttggacgga
cgttgacggggtctatacctgcgacccgcgtcaggtgcccgatgcgaggttgttgaagtc
gatgtcctaccaggaagcgatggagctttcctacttcggcgctaaagttcttcacccccg
caccattacccccatcgcccagttccagatcccttgcctgattaaaaataccggaaatcc
tcaagcaccaggtacgctcattggtgccagccgtgatgaagacgaattaccggtcaaggg
catttccaatctgaataacatggcaatgttcagcgtttctggtccggggatgaaagggat
ggtcggcatggcggcgcgcgtctttgcagcgatgtcacgcgcccgtatttccgtggtgct
gattacgcaatcatcttccgaatacagcatcagtttctgcgttccacaaagcgactgtgt
gcgagctgaacgggcaatgcaggaagagttctacctggaactgaaagaaggcttactgga
gccgctggcagtgacggaacggctggccattatctcggtggtaggtgatggtatgcgcac
cttgcgtgggatctcggcgaaattctttgccgcactggcccgcgccaatatcaacattgt
cgccattgctcagggatcttctgaacgctcaatctctgtcgtggtaaataacgatgatgc
gaccactggcgtgcgcgttactcatcagatgctgttcaataccgatcaggttatcgaagt
gtttgtgattggcgtcggtggcgttggcggtgcgctgctggagcaactgaagcgtcagca
aagctggctgaagaataaacatatcgacttacgtgtctgcggtgttgccaactcgaaggc
tctgctcaccaatgtacatggccttaatctggaaaactggcaggaagaactggcgcaagc
caaagagccgtttaatctcgggcgcttaattcgcctcgtgaaagaatatcatctgctgaa
cccggtcattgttgactgcacttccagccaggcagtggcggatcaatatgccgacttcct
gcgcgaaggtttccacgttgtcacgccgaacaaaaaggccaacacctcgtcgatggatta
ctaccatcagttgcgttatgcggcggaaaaatcgcggcgtaaattcctctatgacaccaa
cgttggggctggattaccggttattgagaacctgcaaaatctgctcaatgcaggtgatga
attgatgaagttctccggcattctttctggttcgctttcttatatcttcggcaagttaga
cgaaggcatgagtttctccgaggcgaccacgctggcgcgggaaatgggttataccgaacc
ggacccgcgagatgatctttctggtatggatgtggcgcgtaaactattgattctcgctcg
tgaaacgggacgtgaactggagctggcggatattgaaattgaacctgtgctgcccgcaga
gtttaacgccgagggtgatgttgccgcttttatggcgaatctgtcacaactcgacgatct
ctttgccgcgcgcgtggcgaaggcccgtgatgaaggaaaagttttgcgctatgttggcaa
tattgatgaagatggcgtctgccgcgtgaagattgccgaagtggatggtaatgatccgct
gttcaaagtgaaaaatggcgaaaacgccctggccttctatagccactattatcagccgct
gccgttggtactgcgcggatatggtgcgggcaatgacgttacagctgccggtgtctttgc
tgatctgctacgtaccctctcatggaagttaggagtctgacatggttaaagtttatgccc
cggcttccagtgccaatatgagcgtcgggtttgatgtgctcggggcggcggtgacacctg
ttgatggtgcattgctcggagatgtagtcacggttgaggcggcagagacattcagtctca
acaacctcggacgctttgccgataagctgccgtcagaaccacgggaaaatatcgtttatc
agtgctgggagcgtttttgccaggaactgggtaagcaaattccagtggcgatgaccctgg
aaaagaatatgccgatcggttcgggcttaggctccagtgcctgttcggtggtcgcggcgc
tgatggcgatgaatgaacactgcggcaagccgcttaatgacactcgtttgctggctttga
tgggcgagctggaaggccgtatctccggcagcattcattacgacaacgtggcaccgtgtt
ttctcggtggtatgcagttgatgatcgaagaaaacgacatcatcagccagcaagtgccag
ggtttgatgagtggctgtgggtgctggcgtatccggggattaaagtctcgacggcagaag
ccagggctattttaccggcgcagtatcgccgcca