annotate tools/mira_3_4/tool_dependencies.xml @ 9:5573d802e431 draft

Uploaded v0.0.8, MIT licence, RST for README, citation information, development moved to GitHub.

<?xml version="1.0"?>
<tool_dependency>
    <package name="MIRA" version="3.4.1.1">
        <install version="1.0">
            <actions>
                <!-- Sourceforge doesn't offer nice clean download URLs which is a shame -->      
                <action type="download_by_url">http://downloads.sourceforge.net/project/mira-assembler/MIRA/stable/mira_3.4.1.1_prod_linux-gnu_x86_64_static.tar.bz2?r=http%3A%2F%2Fsourceforge.net%2Fprojects%2Fmira-assembler%2Ffiles%2FMIRA%2Fstable%2F&amp;ts=1366819213&amp;use_mirror=kent</action>
                <!-- Currently we only need the main binary itself, mira -->
                <action type="move_file"><source>mira_3.4.1.1_prod_linux-gnu_x86_64_static/bin/mira</source><destination>$INSTALL_DIR/</destination></action>
                <action type="set_environment">
                    <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable>
                </action>
            </actions>
        </install>
        <readme>
Downloads MIRA v3.4 from Sourceforge, requesting Bastien's precompiled binaries
for 64bit Linux (x86_64). He also has binaries for 32bit Linux, which we could
use if/when the Galaxy installation framework allow that kind of flexibility.

http://chevreux.org/projects_mira.html
http://sourceforge.net/projects/mira-assembler/
        </readme>
    </package>
</tool_dependency>