Mercurial > repos > peterjc > nlstradamus
changeset 5:e8f15b0136cd draft default tip
v0.0.11 dependency packaging update
| author | peterjc |
|---|---|
| date | Wed, 01 Feb 2017 09:16:28 -0500 |
| parents | 1458e60f3fd0 |
| children | |
| files | tools/nlstradamus/README.rst tools/nlstradamus/tool_dependencies.xml |
| diffstat | 2 files changed, 6 insertions(+), 4 deletions(-) [+] |
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--- a/tools/nlstradamus/README.rst Wed Aug 05 12:23:05 2015 -0400 +++ b/tools/nlstradamus/README.rst Wed Feb 01 09:16:28 2017 -0500 @@ -1,7 +1,7 @@ Galaxy wrapper for NLStradamus v1.7 or v1.8 (C++ version) ========================================================= -This wrapper is copyright 2011-2015 by Peter Cock, The James Hutton Institute +This wrapper is copyright 2011-2017 by Peter Cock, The James Hutton Institute (formerly SCRI, Scottish Crop Research Institute), UK. All rights reserved. See the licence text below (MIT licence). @@ -79,6 +79,7 @@ v0.0.9 - Tool definition now embeds citation information. v0.0.10 - Reorder XML elements (internal change only). - Planemo for Tool Shed upload (``.shed.yml``, internal change only). +v0.0.11 - Update tool dependency definition to use cached URL ======= ====================================================================== @@ -96,12 +97,12 @@ Planemo commands (which requires you have set your Tool Shed access details in ``~/.planemo.yml`` and that you have access rights on the Tool Shed):: - $ planemo shed_update --shed_target testtoolshed --check_diff ~/repositories/pico_galaxy/tools/nlstradamus/ + $ planemo shed_update -t testtoolshed --check_diff ~/repositories/pico_galaxy/tools/nlstradamus/ ... or:: - $ planemo shed_update --shed_target toolshed --check_diff ~/repositories/pico_galaxy/tools/nlstradamus/ + $ planemo shed_update -t toolshed --check_diff ~/repositories/pico_galaxy/tools/nlstradamus/ ... To just build and check the tar ball, use::
--- a/tools/nlstradamus/tool_dependencies.xml Wed Aug 05 12:23:05 2015 -0400 +++ b/tools/nlstradamus/tool_dependencies.xml Wed Feb 01 09:16:28 2017 -0500 @@ -3,7 +3,8 @@ <package name="NLStradamus" version="1.8"> <install version="1.0"> <actions> - <action type="download_by_url">http://www.moseslab.csb.utoronto.ca/NLStradamus/NLStradamus/NLStradamus.1.8.tar.gz</action> + <!-- Original URL http://www.moseslab.csb.utoronto.ca/NLStradamus/NLStradamus/NLStradamus.1.8.tar.gz --> + <action type="download_by_url" sha256sum="73ef3a77c6c1132f213d44bc2a48a8182e652b01b8cd83d06b30832a682ec0d0" target_filename="NLStradamus.1.8.tar.gz">https://depot.galaxyproject.org/software/NLStradamus/NLStradamus_1.8_src_all.tar.gz</action> <!-- Although v1.7 used a subfolder in the tar-ball, v1.8 did not --> <action type="shell_command">g++ NLStradamus.cpp -o NLStradamus -O3</action> <action type="move_file"><source>NLStradamus</source><destination>$INSTALL_DIR/</destination></action>