Mercurial > repos > peterjc > package_mira_3_4_1_1
changeset 0:1c03c304fe69 draft default tip
planemo upload for repository https://github.com/peterjc/pico_galaxy/tree/master/packages/package_mira_3_4_1_1 commit ea24615d4adfe1625a505d71da82eebfe5f6abfc
| author | peterjc |
|---|---|
| date | Wed, 05 Aug 2015 11:22:46 -0400 |
| parents | |
| children | |
| files | tool_dependencies.xml |
| diffstat | 1 files changed, 50 insertions(+), 0 deletions(-) [+] |
line wrap: on
line diff
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tool_dependencies.xml Wed Aug 05 11:22:46 2015 -0400 @@ -0,0 +1,50 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="MIRA" version="3.4.1.1"> + <install version="1.0"> + <actions_group> + <!-- Download the binaries for MIRA compatible with 64-bit Linux. --> + <actions architecture="x86_64" os="linux"> + <action type="download_by_url">http://downloads.sourceforge.net/project/mira-assembler/MIRA/Older%20releases/V3.4.0/mira_3.4.1.1_prod_linux-gnu_x86_64_static.tar.bz2</action> + <action type="move_directory_files"> + <source_directory>bin</source_directory> + <destination_directory>$INSTALL_DIR</destination_directory> + </action> + <action type="set_environment"> + <environment_variable name="PATH" action="prepend_to">$INSTALL_DIR</environment_variable> + </action> + </actions> + <!-- This actions tag is only processed if none of the above tags resulted in a successful installation. --> + <actions> + <action type="shell_command">echo "ERROR: Automated installation on your operating system and CPU architecture combination is not yet supported."</action> + <action type="shell_command">echo "Your machine details (the output from 'uname' and 'arch'):"</action> + <action type="shell_command">uname</action> + <action type="shell_command">arch</action> + <action type="shell_command">echo "If pre-compiled MIRA binaries are now available for this, please report this"</action> + <action type="shell_command">echo "via https://github.com/peterjc/pico_galaxy/issues - thank you!"</action> + <action type="shell_command">false</action> + <!-- The 'false' command will return an error, so Galaxy should treat this as a failed install --> + </actions> + <!-- The $PATH environment variable is only set if one of the above <actions> tags resulted in a successful installation. --> + <action type="set_environment"> + <environment_variable action="prepend_to" name="PATH">$INSTALL_DIR</environment_variable> + </action> + <action type="set_environment"> + <environment_variable action="set_to" name="MIRA3">$INSTALL_DIR</environment_variable> + </action> + </actions_group> + </install> + <readme> +Downloads MIRA v3.4.1.1 from Sourceforge, requesting Bastien's precompiled binaries +for 64bit Linux (x86_64). He also has binaries for 32bit Linux (686 only), which we +could use once the Galaxy installation framework allow that kind of flexibility. + +http://chevreux.org/projects_mira.html +http://sourceforge.net/projects/mira-assembler/ + +The environment variable ``$MIRA3`` will point to the folder containing the binaries, +which is also pre-pended to the ``$PATH`` variable. + </readme> + </package> +</tool_dependency> +