Mercurial > repos > peterjc > seq_filter_by_id
changeset 4:1c36cf8ef133 draft
Uploaded v0.0.7 fixed dependency on Biopython 1.62
| author | peterjc |
|---|---|
| date | Wed, 30 Jul 2014 06:39:53 -0400 |
| parents | 44ab4c0f7683 |
| children | 832c1fd57852 |
| files | tools/seq_filter_by_id/README.rst tools/seq_filter_by_id/repository_dependencies.xml tools/seq_filter_by_id/tool_dependencies.xml |
| diffstat | 3 files changed, 9 insertions(+), 8 deletions(-) [+] |
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--- a/tools/seq_filter_by_id/README.rst Fri Oct 11 04:37:12 2013 -0400 +++ b/tools/seq_filter_by_id/README.rst Wed Jul 30 06:39:53 2014 -0400 @@ -71,6 +71,7 @@ - Updated citation information (Cock et al. 2013). - Development moved to GitHub, https://github.com/peterjc/pico_galaxy - Renamed folder and adopted README.rst naming. +v0.0.7 - Correct automated dependency definition. ======= ====================================================================== @@ -88,7 +89,7 @@ For making the "Galaxy Tool Shed" http://toolshed.g2.bx.psu.edu/ tarball use the following command from the Galaxy root folder:: - $ tar -czf seq_filter_by_id.tar.gz tools/seq_filter_by_id/README.rst tools/seq_filter_by_id/seq_filter_by_id.* tools/seq_filter_by_id/repository_dependencies.xml test-data/k12_ten_proteins.fasta test-data/k12_hypothetical.fasta test-data/k12_hypothetical.tabular + $ tar -czf seq_filter_by_id.tar.gz tools/seq_filter_by_id/README.rst tools/seq_filter_by_id/seq_filter_by_id.* tools/seq_filter_by_id/tool_dependencies.xml test-data/k12_ten_proteins.fasta test-data/k12_hypothetical.fasta test-data/k12_hypothetical.tabular Check this worked:: @@ -96,7 +97,7 @@ tools/seq_filter_by_id/README.rst tools/seq_filter_by_id/seq_filter_by_id.py tools/seq_filter_by_id/seq_filter_by_id.xml - tools/seq_filter_by_id/repository_dependencies.xml + tools/seq_filter_by_id/tool_dependencies.xml test-data/k12_ten_proteins.fasta test-data/k12_hypothetical.fasta test-data/k12_hypothetical.tabular
--- a/tools/seq_filter_by_id/repository_dependencies.xml Fri Oct 11 04:37:12 2013 -0400 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,6 +0,0 @@ -<?xml version="1.0"?> -<repositories description="This requires Biopython as a dependency."> -<!-- Leave out the tool shed and revision to get the current - tool shed and latest revision at the time of upload --> -<repository changeset_revision="3e82cbc44886" name="package_biopython_1_62" owner="biopython" toolshed="http://toolshed.g2.bx.psu.edu" /> -</repositories>
--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/tools/seq_filter_by_id/tool_dependencies.xml Wed Jul 30 06:39:53 2014 -0400 @@ -0,0 +1,6 @@ +<?xml version="1.0"?> +<tool_dependency> + <package name="biopython" version="1.62"> + <repository changeset_revision="3e82cbc44886" name="package_biopython_1_62" owner="biopython" toolshed="http://toolshed.g2.bx.psu.edu" /> + </package> +</tool_dependency>