comparison tools/filters/seq_select_by_id.xml @ 2:28d52478ace9 draft

Uploaded v0.0.4 which adds a unit test.

1:50a8a6917a9c

<tool id="seq_select_by_id" name="Select sequences by ID" version="0.0.3">
	<description>from a tabular file</description>
	<command interpreter="python">
seq_select_by_id.py $input_tabular $column $input_file $input_file.ext $output_file
	</command>
	<inputs>
		<param name="input_file" type="data" format="fasta,qual,fastq,sff" label="Sequence file to select from" help="FASTA, QUAL, FASTQ, or SFF format." />

				<when input_dataset="input_file" attribute="extension" value="fastqcssanger" format="fastqcssanger" />
			</change_format>
		</data>
	</outputs>
	<tests>
	</tests>
	<requirements>
		<requirement type="python-module">Bio</requirement>
	</requirements>
	<help>

2:28d52478ace9

<tool id="seq_select_by_id" name="Select sequences by ID" version="0.0.4">
	<description>from a tabular file</description>
	<version_command interpreter="python">seq_select_by_id.py --version</version_command>
	<command interpreter="python">
seq_select_by_id.py $input_tabular $column $input_file $input_file.ext $output_file
	</command>
	<inputs>
		<param name="input_file" type="data" format="fasta,qual,fastq,sff" label="Sequence file to select from" help="FASTA, QUAL, FASTQ, or SFF format." />

				<when input_dataset="input_file" attribute="extension" value="fastqcssanger" format="fastqcssanger" />
			</change_format>
		</data>
	</outputs>
	<tests>
		<test>
			<param name="input_file" value="k12_ten_proteins.fasta" ftype="fasta" />
			<param name="input_tabular" value="k12_hypothetical.tabular" ftype="tabular" />
			<param name="column" value="1" />
			<output name="output_file" file="k12_hypothetical.fasta" ftype="fasta" />
		</test>
	</tests>
	<requirements>
		<requirement type="python-module">Bio</requirement>
	</requirements>
	<help>