Mercurial > repos > peterjc > seq_select_by_id
comparison tools/filters/seq_select_by_id.xml @ 2:28d52478ace9 draft
Uploaded v0.0.4 which adds a unit test.
author | peterjc |
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date | Mon, 15 Apr 2013 12:28:51 -0400 |
parents | 50a8a6917a9c |
children | 19e26966ed3e |
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1:50a8a6917a9c | 2:28d52478ace9 |
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1 <tool id="seq_select_by_id" name="Select sequences by ID" version="0.0.3"> | 1 <tool id="seq_select_by_id" name="Select sequences by ID" version="0.0.4"> |
2 <description>from a tabular file</description> | 2 <description>from a tabular file</description> |
3 <version_command interpreter="python">seq_select_by_id.py --version</version_command> | |
3 <command interpreter="python"> | 4 <command interpreter="python"> |
4 seq_select_by_id.py $input_tabular $column $input_file $input_file.ext $output_file | 5 seq_select_by_id.py $input_tabular $column $input_file $input_file.ext $output_file |
5 </command> | 6 </command> |
6 <inputs> | 7 <inputs> |
7 <param name="input_file" type="data" format="fasta,qual,fastq,sff" label="Sequence file to select from" help="FASTA, QUAL, FASTQ, or SFF format." /> | 8 <param name="input_file" type="data" format="fasta,qual,fastq,sff" label="Sequence file to select from" help="FASTA, QUAL, FASTQ, or SFF format." /> |
20 <when input_dataset="input_file" attribute="extension" value="fastqcssanger" format="fastqcssanger" /> | 21 <when input_dataset="input_file" attribute="extension" value="fastqcssanger" format="fastqcssanger" /> |
21 </change_format> | 22 </change_format> |
22 </data> | 23 </data> |
23 </outputs> | 24 </outputs> |
24 <tests> | 25 <tests> |
26 <test> | |
27 <param name="input_file" value="k12_ten_proteins.fasta" ftype="fasta" /> | |
28 <param name="input_tabular" value="k12_hypothetical.tabular" ftype="tabular" /> | |
29 <param name="column" value="1" /> | |
30 <output name="output_file" file="k12_hypothetical.fasta" ftype="fasta" /> | |
31 </test> | |
25 </tests> | 32 </tests> |
26 <requirements> | 33 <requirements> |
27 <requirement type="python-module">Bio</requirement> | 34 <requirement type="python-module">Bio</requirement> |
28 </requirements> | 35 </requirements> |
29 <help> | 36 <help> |